Wall clock time and date at job start Tue Mar 31 2020 20:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47227 * 120.00200 * 2 1 3 5 5 C 1.39986 * 119.99998 * 275.00003 * 4 2 1 6 6 C 1.40426 * 125.97564 * 0.02562 * 5 4 2 7 7 C 1.35248 * 107.86223 * 179.97438 * 6 5 4 8 8 N 1.34965 * 107.86209 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.97151 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47012 * 125.00573 * 9 8 7 11 11 O 1.21287 * 120.00082 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00205 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99860 * 179.97438 * 12 10 9 14 14 C 1.46497 * 119.99551 * 359.97438 * 12 10 9 15 15 N 1.31228 * 125.97300 * 179.68692 * 5 4 2 16 16 C 1.50706 * 109.46913 * 240.00627 * 2 1 3 17 17 O 1.21281 * 119.99660 * 239.99632 * 16 2 1 18 18 N 1.34771 * 120.00094 * 59.99917 * 16 2 1 19 19 C 1.46501 * 120.00308 * 359.97438 * 18 16 2 20 20 C 1.46506 * 119.99594 * 179.97438 * 18 16 2 21 21 C 1.50699 * 109.46928 * 90.00049 * 20 18 16 22 22 H 1.08003 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00518 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47000 * 60.00482 * 25 23 21 27 27 H 1.48506 * 109.47330 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47185 * 300.00291 * 25 23 21 29 29 H 1.08992 * 109.47310 * 299.99576 * 1 2 3 30 30 H 1.09003 * 109.47197 * 60.00227 * 1 2 3 31 31 H 1.09000 * 109.46579 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99902 * 95.00338 * 4 2 1 33 33 H 1.07995 * 126.07066 * 359.97438 * 6 5 4 34 34 H 1.08003 * 126.07028 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47501 * 245.00709 * 9 8 7 36 36 H 1.09007 * 109.47155 * 5.01067 * 9 8 7 37 37 H 1.09000 * 109.46786 * 90.00237 * 13 12 10 38 38 H 1.09001 * 109.46855 * 209.99526 * 13 12 10 39 39 H 1.08997 * 109.47487 * 330.00081 * 13 12 10 40 40 H 1.08994 * 109.47509 * 0.02562 * 14 12 10 41 41 H 1.09008 * 109.46819 * 120.00810 * 14 12 10 42 42 H 1.08999 * 109.46673 * 239.99608 * 14 12 10 43 43 H 1.08999 * 109.46532 * 269.99942 * 19 18 16 44 44 H 1.09000 * 109.46877 * 29.99967 * 19 18 16 45 45 H 1.09000 * 109.47251 * 150.00072 * 19 18 16 46 46 H 1.09004 * 109.47073 * 209.99877 * 20 18 16 47 47 H 1.09000 * 109.47212 * 329.99960 * 20 18 16 48 48 H 0.96992 * 120.00316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1521 0.0077 2.4020 6 6 1.8556 1.3650 2.6065 7 6 2.1167 1.6561 3.9012 8 7 2.5609 0.5297 4.4974 9 6 2.9584 0.3984 5.9013 10 6 2.1724 -0.7154 6.5438 11 8 1.3599 -1.3379 5.8931 12 7 2.3716 -1.0191 7.8417 13 6 1.6071 -2.1015 8.4664 14 6 3.3526 -0.2668 8.6277 15 7 2.5705 -0.4932 3.5405 16 6 2.0323 -0.7103 -1.2306 17 8 2.7296 -1.6964 -1.1194 18 7 1.7067 -0.2498 -2.4546 19 6 0.8640 0.9411 -2.5890 20 6 2.1956 -0.9400 -3.6508 21 6 1.2034 -1.9974 -4.0613 22 1 0.2989 -2.1407 -3.4886 23 6 1.4497 -2.7813 -5.1684 24 7 2.5508 -2.6066 -5.8661 25 14 0.2202 -4.0925 -5.6768 26 1 -1.0886 -3.4560 -5.9720 27 1 0.7156 -4.7922 -6.8894 28 1 0.0565 -5.0722 -4.5728 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1525 33 1 1.4850 2.0540 1.8621 34 1 1.9912 2.6188 4.3743 35 1 4.0230 0.1714 5.9579 36 1 2.7578 1.3334 6.4246 37 1 2.1478 -3.0410 8.3522 38 1 1.4725 -1.8863 9.5265 39 1 0.6324 -2.1825 7.9854 40 1 3.8175 0.4921 7.9985 41 1 2.8525 0.2149 9.4681 42 1 4.1173 -0.9475 9.0018 43 1 -0.1838 0.6426 -2.6225 44 1 1.0272 1.5997 -1.7359 45 1 1.1217 1.4667 -3.5084 46 1 2.3165 -0.2211 -4.4612 47 1 3.1559 -1.4076 -3.4336 48 1 2.7243 -3.1583 -6.6447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359073394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:15 Heat of formation + Delta-G solvation = 14.805168 kcal Electronic energy + Delta-G solvation = -28960.000481 eV Core-core repulsion = 24859.170020 eV Total energy + Delta-G solvation = -4100.830461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07852 -40.99981 -40.58783 -37.07510 -36.64923 -36.56886 -34.82439 -33.85270 -31.73284 -30.54866 -29.57102 -29.16542 -27.90162 -27.56846 -26.13035 -25.61787 -23.89290 -22.30172 -21.31770 -20.32005 -20.01421 -18.69358 -18.55038 -18.17128 -17.86562 -17.40563 -17.02230 -16.73232 -16.58150 -16.22214 -15.94730 -15.61884 -15.35721 -14.91319 -14.62656 -14.51696 -14.24216 -14.10255 -14.04454 -13.73875 -13.47741 -13.44790 -13.42045 -13.37395 -13.22167 -13.13648 -12.98187 -12.88653 -12.76095 -12.59308 -12.31759 -12.15551 -11.70624 -11.50307 -11.24984 -10.86114 -10.64288 -10.59014 -9.73816 -9.56232 -9.45167 -8.58513 -8.22742 -6.36922 1.10160 1.35149 1.39930 1.42147 1.46970 1.50500 1.72562 2.00768 2.17100 2.28682 2.40077 2.74052 3.06741 3.42544 3.57894 3.80704 4.01938 4.05950 4.15418 4.18948 4.29313 4.39200 4.42223 4.48197 4.61162 4.64586 4.75935 4.76799 4.81791 4.87229 4.88599 4.93990 4.96259 4.98755 5.08046 5.21101 5.28929 5.41580 5.47070 5.55642 5.81931 6.05563 6.09108 6.19619 6.39000 6.67245 6.69263 6.74563 7.10171 7.17813 7.25873 7.41275 8.84103 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.002080 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.653320 B =13458.936906 C =14128.397310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.167 3.833 3 H 0.129 0.871 4 N -0.717 5.717 5 C 0.321 3.679 6 C -0.322 4.322 7 C 0.094 3.906 8 N -0.374 5.374 9 C 0.122 3.878 10 C 0.485 3.515 11 O -0.570 6.570 12 N -0.622 5.622 13 C 0.083 3.917 14 C 0.065 3.935 15 N -0.385 5.385 16 C 0.491 3.509 17 O -0.594 6.594 18 N -0.601 5.601 19 C 0.071 3.929 20 C 0.259 3.741 21 C -0.542 4.542 22 H 0.053 0.947 23 C 0.007 3.993 24 N -0.927 5.927 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.278 1.278 28 H -0.282 1.282 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.394 0.606 33 H 0.167 0.833 34 H 0.229 0.771 35 H 0.129 0.871 36 H 0.178 0.822 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.031 0.969 47 H -0.005 1.005 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 17.648 31.742 36.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.146 0.854 4 N -0.357 5.357 5 C 0.063 3.937 6 C -0.353 4.353 7 C -0.052 4.052 8 N -0.157 5.157 9 C -0.002 4.002 10 C 0.272 3.728 11 O -0.448 6.448 12 N -0.357 5.357 13 C -0.059 4.059 14 C -0.076 4.076 15 N -0.216 5.216 16 C 0.279 3.721 17 O -0.475 6.475 18 N -0.332 5.332 19 C -0.070 4.070 20 C 0.137 3.863 21 C -0.580 4.580 22 H 0.071 0.929 23 C -0.192 4.192 24 N -0.567 5.567 25 Si 0.790 3.210 26 H -0.182 1.182 27 H -0.203 1.203 28 H -0.208 1.208 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.055 0.945 32 H 0.228 0.772 33 H 0.184 0.816 34 H 0.245 0.755 35 H 0.147 0.853 36 H 0.195 0.805 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.049 0.951 47 H 0.014 0.986 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.050 15.908 31.939 35.697 hybrid contribution -0.438 -1.327 -1.195 1.839 sum -1.488 14.581 30.744 34.059 Atomic orbital electron populations 1.22447 0.92218 1.02570 1.05116 1.20567 0.95818 0.96814 0.81023 0.85413 1.43522 1.75162 1.12121 1.04941 1.19541 0.95699 0.92068 0.86385 1.21417 1.20449 0.94357 0.99112 1.23144 0.95965 0.93254 0.92848 1.47776 1.53367 1.06512 1.08072 1.21860 1.00602 1.01070 0.76665 1.21409 0.83416 0.85661 0.82315 1.90807 1.37251 1.53587 1.63144 1.47930 1.41721 1.36204 1.09799 1.21664 0.95700 0.89394 0.99177 1.22240 0.91501 0.96829 0.97038 1.77498 1.33641 1.12825 0.97681 1.21301 0.80268 0.84650 0.85879 1.90637 1.40991 1.28963 1.86929 1.48058 1.50126 1.29358 1.05616 1.22222 0.94690 0.85871 1.04249 1.18818 0.93793 0.91794 0.81862 1.21664 1.06139 1.18898 1.11314 0.92884 1.25846 0.97552 0.99492 0.96335 1.70035 1.26512 1.41328 1.18838 0.85500 0.79428 0.78713 0.77353 1.18197 1.20266 1.20792 0.89463 0.88019 0.94511 0.77164 0.81551 0.75501 0.85337 0.80458 0.93229 0.87690 0.93255 0.88106 0.89462 0.90817 0.91431 0.87795 0.90561 0.95108 0.98640 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 9.14 71.98 0.66 -3.79 16 2 C 0.17 5.35 2.18 44.25 0.10 5.45 16 3 H 0.13 3.22 6.40 -2.39 -0.02 3.20 16 4 N -0.72 -26.25 5.16 -326.97 -1.69 -27.94 16 5 C 0.32 10.65 8.14 133.39 1.09 11.74 16 6 C -0.32 -7.47 9.92 22.11 0.22 -7.25 16 7 C 0.09 1.59 11.44 83.52 0.96 2.54 16 8 N -0.37 -8.55 3.40 -351.83 -1.20 -9.74 16 9 C 0.12 1.53 5.30 85.63 0.45 1.98 16 10 C 0.48 9.96 7.70 87.66 0.68 10.64 16 11 O -0.57 -19.49 15.27 -3.05 -0.05 -19.54 16 12 N -0.62 -7.87 3.27 -871.88 -2.85 -10.73 16 13 C 0.08 1.09 10.48 127.77 1.34 2.43 16 14 C 0.07 0.10 10.60 127.77 1.35 1.45 16 15 N -0.38 -13.45 11.64 -54.55 -0.63 -14.09 16 16 C 0.49 21.63 7.14 87.66 0.63 22.25 16 17 O -0.59 -32.93 15.42 -3.03 -0.05 -32.98 16 18 N -0.60 -25.81 2.86 -851.11 -2.43 -28.25 16 19 C 0.07 2.04 8.85 127.77 1.13 3.17 16 20 C 0.26 14.24 5.20 85.63 0.45 14.68 16 21 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 22 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 23 C 0.01 0.40 5.46 84.65 0.46 0.86 16 24 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 25 Si 0.97 46.28 29.54 68.60 2.03 48.30 16 26 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 28 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 2.29 4.53 -2.39 -0.01 2.28 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.39 16.90 7.92 -92.71 -0.73 16.16 16 33 H 0.17 2.91 7.45 -2.91 -0.02 2.89 16 34 H 0.23 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.13 1.12 7.79 -2.39 -0.02 1.10 16 36 H 0.18 0.08 7.71 -2.38 -0.02 0.06 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.59 8.07 -2.39 -0.02 0.57 16 39 H 0.05 0.93 7.42 -2.39 -0.02 0.91 16 40 H 0.10 -0.31 5.77 -2.39 -0.01 -0.33 16 41 H 0.09 -0.18 8.14 -2.38 -0.02 -0.20 16 42 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.07 1.81 6.95 -2.39 -0.02 1.79 16 44 H 0.10 2.04 6.01 -2.39 -0.01 2.02 16 45 H 0.08 2.09 7.89 -2.39 -0.02 2.07 16 46 H 0.03 1.69 7.89 -2.38 -0.02 1.67 16 47 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 48 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -100.25 396.21 3.40 -96.85 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.25 Total: 20.60 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 9.74 Total: 34.45 kcal Atomic # 7 Polarization: -139.17 SS G_CDS: -8.52 Total: -147.69 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.09 Total: -52.52 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -100.25 3.40 -96.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359073394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.655 kcal (2) G-P(sol) polarization free energy of solvation -100.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds