Wall clock time and date at job start Tue Mar 31 2020 20:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 N 1.46498 * 109.47211 * 240.00653 * 2 1 3 5 5 C 1.39988 * 120.00040 * 84.99637 * 4 2 1 6 6 C 1.40434 * 125.97760 * 0.02562 * 5 4 2 7 7 C 1.35249 * 107.86074 * 179.74183 * 6 5 4 8 8 N 1.34958 * 107.86089 * 0.42516 * 7 6 5 9 9 C 1.46500 * 125.96716 * 179.84076 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.71714 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.46499 * 120.00036 * 359.72107 * 12 10 9 15 15 N 1.31230 * 125.97541 * 180.02562 * 5 4 2 16 16 C 1.50698 * 109.47335 * 120.00470 * 2 1 3 17 17 O 1.21276 * 120.00051 * 119.99993 * 16 2 1 18 18 N 1.34777 * 119.99880 * 299.99639 * 16 2 1 19 19 C 1.46501 * 120.00245 * 0.02562 * 18 16 2 20 20 C 1.46500 * 119.99744 * 180.02562 * 18 16 2 21 21 C 1.50699 * 109.47431 * 90.00408 * 20 18 16 22 22 H 1.08003 * 119.99463 * 359.97438 * 21 20 18 23 23 C 1.37873 * 120.00246 * 179.97438 * 21 20 18 24 24 N 1.31513 * 120.00067 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00002 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47127 * 89.99844 * 25 23 21 27 27 H 1.48504 * 109.46961 * 209.99853 * 25 23 21 28 28 H 1.48495 * 109.47014 * 329.99696 * 25 23 21 29 29 H 1.09004 * 109.47084 * 299.99625 * 1 2 3 30 30 H 1.08999 * 109.47705 * 59.99488 * 1 2 3 31 31 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00032 * 265.00008 * 4 2 1 33 33 H 1.08000 * 126.06384 * 0.02562 * 6 5 4 34 34 H 1.08003 * 126.06263 * 180.27125 * 7 6 5 35 35 H 1.09004 * 109.47418 * 4.71865 * 9 8 7 36 36 H 1.08998 * 109.47468 * 244.71792 * 9 8 7 37 37 H 1.08995 * 109.47304 * 179.72347 * 13 12 10 38 38 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 39 39 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 40 40 H 1.09003 * 109.47269 * 270.27384 * 14 12 10 41 41 H 1.08994 * 109.47173 * 30.28203 * 14 12 10 42 42 H 1.09005 * 109.47077 * 150.28374 * 14 12 10 43 43 H 1.08993 * 109.47208 * 89.99197 * 19 18 16 44 44 H 1.09003 * 109.46909 * 209.99789 * 19 18 16 45 45 H 1.09004 * 109.46754 * 329.99656 * 19 18 16 46 46 H 1.08998 * 109.47020 * 210.00568 * 20 18 16 47 47 H 1.09000 * 109.47176 * 329.99958 * 20 18 16 48 48 H 0.96999 * 120.00024 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1520 0.0080 -2.4020 6 6 1.8564 1.3656 -2.6062 7 6 2.1231 1.6583 -3.8994 8 7 2.5614 0.5305 -4.4971 9 6 2.9593 0.3996 -5.9010 10 6 4.3594 -0.1528 -5.9769 11 8 4.9654 -0.4112 -4.9586 12 7 4.9385 -0.3587 -7.1763 13 6 6.2994 -0.8963 -7.2501 14 6 4.2047 -0.0513 -8.4065 15 7 2.5754 -0.4914 -3.5393 16 6 2.0324 -0.7105 1.2304 17 8 2.7296 -1.6965 1.1190 18 7 1.7069 -0.2501 2.4545 19 6 0.8642 0.9408 2.5891 20 6 2.1957 -0.9405 3.6506 21 6 3.5231 -0.3564 4.0605 22 1 3.9591 0.4483 3.4871 23 6 4.1808 -0.8493 5.1675 24 7 5.3394 -0.3400 5.5249 25 14 3.4269 -2.2416 6.1588 26 1 3.8878 -3.5437 5.6134 27 1 3.8472 -2.1228 7.5781 28 1 1.9464 -2.1652 6.0729 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6316 -1.1528 33 1 1.4866 2.0548 -1.8614 34 1 2.0038 2.6228 -4.3706 35 1 2.9284 1.3781 -6.3802 36 1 2.2737 -0.2768 -6.4114 37 1 6.5938 -0.9978 -8.2946 38 1 6.9858 -0.2180 -6.7434 39 1 6.3310 -1.8729 -6.7671 40 1 3.6450 -0.9307 -8.7251 41 1 3.5143 0.7716 -8.2216 42 1 4.9090 0.2338 -9.1880 43 1 -0.1836 0.6425 2.6225 44 1 1.1220 1.4662 3.5086 45 1 1.0274 1.5995 1.7361 46 1 1.4778 -0.8154 4.4612 47 1 2.3172 -2.0017 3.4334 48 1 5.8023 -0.6870 6.3035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359073395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:18 Heat of formation + Delta-G solvation = 50.390316 kcal Electronic energy + Delta-G solvation = -29039.258223 eV Core-core repulsion = 24939.970850 eV Total energy + Delta-G solvation = -4099.287373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14326 -39.88547 -39.36729 -35.96687 -35.72014 -34.99239 -33.12160 -32.42590 -30.70639 -29.50042 -28.78796 -28.01470 -27.29117 -26.22968 -25.41184 -23.90420 -22.01767 -21.36217 -20.21058 -19.56367 -18.54437 -17.62912 -17.33008 -16.91979 -16.77474 -16.38092 -15.97322 -15.74757 -15.02764 -14.90251 -14.70111 -14.50786 -13.94525 -13.74080 -13.58990 -13.37772 -13.32512 -13.15103 -13.12569 -13.00014 -12.77115 -12.44931 -12.39844 -12.36856 -12.23626 -12.02220 -11.68849 -11.51774 -11.18530 -10.89418 -10.51272 -10.48393 -10.24207 -10.12100 -9.93289 -9.51266 -9.10767 -8.99584 -8.59707 -8.55570 -7.72154 -7.46807 -6.04986 -4.03949 1.91753 2.26645 2.29501 2.68238 3.20556 3.31715 3.33817 3.37743 3.39932 3.52300 3.97915 4.03448 4.28809 4.42711 4.53172 4.69359 4.72439 4.79523 4.87223 4.90827 5.08549 5.20594 5.22205 5.28168 5.34902 5.46848 5.50187 5.50826 5.68126 5.77574 5.81231 5.84492 5.93704 5.98924 6.13723 6.30228 6.41901 6.69766 6.82042 6.95009 7.07718 7.28145 7.33726 7.63614 7.83163 7.90826 8.17956 8.35446 8.49586 8.90945 8.99702 9.54738 11.08424 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.002267 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.222248 B =12349.041078 C =13415.178421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.149 3.851 3 H 0.098 0.902 4 N -0.700 5.700 5 C 0.347 3.653 6 C -0.298 4.298 7 C 0.072 3.928 8 N -0.373 5.373 9 C 0.130 3.870 10 C 0.493 3.507 11 O -0.493 6.493 12 N -0.628 5.628 13 C 0.091 3.909 14 C 0.075 3.925 15 N -0.327 5.327 16 C 0.504 3.496 17 O -0.532 6.532 18 N -0.593 5.593 19 C 0.079 3.921 20 C 0.216 3.784 21 C -0.529 4.529 22 H 0.075 0.925 23 C 0.071 3.929 24 N -0.897 5.897 25 Si 0.877 3.123 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.266 1.266 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.037 0.963 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 6.931 -29.151 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.039 3.961 3 H 0.116 0.884 4 N -0.342 5.342 5 C 0.087 3.913 6 C -0.331 4.331 7 C -0.074 4.074 8 N -0.156 5.156 9 C 0.004 3.996 10 C 0.278 3.722 11 O -0.365 6.365 12 N -0.365 5.365 13 C -0.051 4.051 14 C -0.068 4.068 15 N -0.158 5.158 16 C 0.290 3.710 17 O -0.409 6.409 18 N -0.325 5.325 19 C -0.065 4.065 20 C 0.095 3.905 21 C -0.568 4.568 22 H 0.093 0.907 23 C -0.131 4.131 24 N -0.535 5.535 25 Si 0.704 3.296 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.190 1.190 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.250 0.750 33 H 0.163 0.837 34 H 0.188 0.812 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.450 5.364 -29.106 31.069 hybrid contribution -0.302 -0.119 0.861 0.920 sum -9.752 5.245 -28.245 30.338 Atomic orbital electron populations 1.22491 0.94152 1.03299 1.03296 1.20571 0.94549 0.97050 0.83960 0.88383 1.43374 1.74411 1.12717 1.03714 1.19207 0.94186 0.90684 0.87243 1.21083 1.19252 0.95708 0.97035 1.22285 0.99495 0.91919 0.93656 1.47454 1.53346 1.07100 1.07656 1.21320 0.94384 1.03976 0.79930 1.20760 0.88529 0.79549 0.83385 1.90864 1.63637 1.48247 1.33710 1.47779 1.16519 1.66254 1.05978 1.21620 0.81915 0.99572 1.02025 1.21889 0.97304 1.01034 0.86563 1.77626 1.31071 1.10346 0.96777 1.20309 0.80956 0.85299 0.84471 1.90678 1.37411 1.26858 1.85937 1.47745 1.49871 1.28424 1.06459 1.21874 0.93600 0.87890 1.03138 1.19688 0.95381 0.93736 0.81661 1.21326 1.03109 1.20358 1.11961 0.90734 1.24867 0.94647 0.96474 0.97096 1.69900 1.14747 1.42324 1.26554 0.86839 0.79990 0.83306 0.79467 1.19924 1.21087 1.19049 0.90113 0.91521 0.92010 0.75025 0.83671 0.81206 0.86199 0.87363 0.90626 0.92034 0.91932 0.92220 0.91047 0.90604 0.93050 0.90439 0.91843 0.95038 0.94511 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.14 37.16 0.34 -1.78 16 2 C 0.15 2.38 2.18 -69.08 -0.15 2.23 16 3 H 0.10 1.46 6.40 -51.93 -0.33 1.13 16 4 N -0.70 -12.20 5.16 -54.70 -0.28 -12.48 16 5 C 0.35 5.78 8.14 -154.54 -1.26 4.52 16 6 C -0.30 -3.95 9.92 -39.82 -0.40 -4.35 16 7 C 0.07 0.78 11.43 -17.24 -0.20 0.58 16 8 N -0.37 -4.76 3.40 -62.56 -0.21 -4.97 16 9 C 0.13 1.06 5.54 -5.19 -0.03 1.03 16 10 C 0.49 5.61 7.70 -10.98 -0.08 5.52 16 11 O -0.49 -8.65 15.70 5.56 0.09 -8.56 16 12 N -0.63 -4.81 3.27 -189.51 -0.62 -5.43 16 13 C 0.09 0.67 10.16 59.85 0.61 1.28 16 14 C 0.08 0.21 10.21 59.85 0.61 0.82 16 15 N -0.33 -5.67 11.65 31.41 0.37 -5.30 16 16 C 0.50 10.59 7.14 -10.99 -0.08 10.51 16 17 O -0.53 -13.61 15.42 5.56 0.09 -13.52 16 18 N -0.59 -12.25 2.86 -182.96 -0.52 -12.77 16 19 C 0.08 1.17 8.80 59.85 0.53 1.69 16 20 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 21 C -0.53 -15.52 9.94 -34.44 -0.34 -15.86 16 22 H 0.07 2.41 8.06 -52.48 -0.42 1.98 16 23 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 24 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 25 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 26 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 29 H 0.08 0.85 4.53 -51.93 -0.24 0.62 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 7.88 7.92 -40.82 -0.32 7.55 16 33 H 0.15 1.62 7.45 -52.49 -0.39 1.23 16 34 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 0.43 7.34 -51.93 -0.38 0.05 16 36 H 0.11 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.07 0.30 7.79 -51.93 -0.40 -0.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.07 0.06 6.45 -51.93 -0.33 -0.27 16 42 H 0.08 0.10 7.92 -51.93 -0.41 -0.31 16 43 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 44 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 46 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 47 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -42.68 393.69 -6.81 -49.49 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.18 Total: 4.24 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -0.57 Total: 13.55 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -0.50 Total: -68.45 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.17 Total: -22.08 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -42.68 -6.81 -49.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359073395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.882 kcal (2) G-P(sol) polarization free energy of solvation -42.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds