Wall clock time and date at job start Tue Mar 31 2020 20:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 N 1.46498 * 109.47211 * 240.00653 * 2 1 3 5 5 C 1.39988 * 120.00040 * 84.99637 * 4 2 1 6 6 C 1.40434 * 125.97760 * 0.02562 * 5 4 2 7 7 C 1.35249 * 107.86074 * 179.74183 * 6 5 4 8 8 N 1.34958 * 107.86089 * 0.42516 * 7 6 5 9 9 C 1.46500 * 125.96716 * 179.84076 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.71714 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.46499 * 120.00036 * 359.72107 * 12 10 9 15 15 N 1.31230 * 125.97541 * 180.02562 * 5 4 2 16 16 C 1.50698 * 109.47335 * 120.00470 * 2 1 3 17 17 O 1.21276 * 120.00051 * 119.99993 * 16 2 1 18 18 N 1.34777 * 119.99880 * 299.99639 * 16 2 1 19 19 C 1.46501 * 120.00245 * 0.02562 * 18 16 2 20 20 C 1.46500 * 119.99744 * 180.02562 * 18 16 2 21 21 C 1.50699 * 109.47431 * 90.00408 * 20 18 16 22 22 H 1.08003 * 119.99463 * 359.97438 * 21 20 18 23 23 C 1.37873 * 120.00246 * 179.97438 * 21 20 18 24 24 N 1.31513 * 120.00067 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00002 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47127 * 89.99844 * 25 23 21 27 27 H 1.48504 * 109.46961 * 209.99853 * 25 23 21 28 28 H 1.48495 * 109.47014 * 329.99696 * 25 23 21 29 29 H 1.09004 * 109.47084 * 299.99625 * 1 2 3 30 30 H 1.08999 * 109.47705 * 59.99488 * 1 2 3 31 31 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00032 * 265.00008 * 4 2 1 33 33 H 1.08000 * 126.06384 * 0.02562 * 6 5 4 34 34 H 1.08003 * 126.06263 * 180.27125 * 7 6 5 35 35 H 1.09004 * 109.47418 * 4.71865 * 9 8 7 36 36 H 1.08998 * 109.47468 * 244.71792 * 9 8 7 37 37 H 1.08995 * 109.47304 * 179.72347 * 13 12 10 38 38 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 39 39 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 40 40 H 1.09003 * 109.47269 * 270.27384 * 14 12 10 41 41 H 1.08994 * 109.47173 * 30.28203 * 14 12 10 42 42 H 1.09005 * 109.47077 * 150.28374 * 14 12 10 43 43 H 1.08993 * 109.47208 * 89.99197 * 19 18 16 44 44 H 1.09003 * 109.46909 * 209.99789 * 19 18 16 45 45 H 1.09004 * 109.46754 * 329.99656 * 19 18 16 46 46 H 1.08998 * 109.47020 * 210.00568 * 20 18 16 47 47 H 1.09000 * 109.47176 * 329.99958 * 20 18 16 48 48 H 0.96999 * 120.00024 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1520 0.0080 -2.4020 6 6 1.8564 1.3656 -2.6062 7 6 2.1231 1.6583 -3.8994 8 7 2.5614 0.5305 -4.4971 9 6 2.9593 0.3996 -5.9010 10 6 4.3594 -0.1528 -5.9769 11 8 4.9654 -0.4112 -4.9586 12 7 4.9385 -0.3587 -7.1763 13 6 6.2994 -0.8963 -7.2501 14 6 4.2047 -0.0513 -8.4065 15 7 2.5754 -0.4914 -3.5393 16 6 2.0324 -0.7105 1.2304 17 8 2.7296 -1.6965 1.1190 18 7 1.7069 -0.2501 2.4545 19 6 0.8642 0.9408 2.5891 20 6 2.1957 -0.9405 3.6506 21 6 3.5231 -0.3564 4.0605 22 1 3.9591 0.4483 3.4871 23 6 4.1808 -0.8493 5.1675 24 7 5.3394 -0.3400 5.5249 25 14 3.4269 -2.2416 6.1588 26 1 3.8878 -3.5437 5.6134 27 1 3.8472 -2.1228 7.5781 28 1 1.9464 -2.1652 6.0729 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6316 -1.1528 33 1 1.4866 2.0548 -1.8614 34 1 2.0038 2.6228 -4.3706 35 1 2.9284 1.3781 -6.3802 36 1 2.2737 -0.2768 -6.4114 37 1 6.5938 -0.9978 -8.2946 38 1 6.9858 -0.2180 -6.7434 39 1 6.3310 -1.8729 -6.7671 40 1 3.6450 -0.9307 -8.7251 41 1 3.5143 0.7716 -8.2216 42 1 4.9090 0.2338 -9.1880 43 1 -0.1836 0.6425 2.6225 44 1 1.1220 1.4662 3.5086 45 1 1.0274 1.5995 1.7361 46 1 1.4778 -0.8154 4.4612 47 1 2.3172 -2.0017 3.4334 48 1 5.8023 -0.6870 6.3035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359073395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:18 Heat of formation + Delta-G solvation = 15.994179 kcal Electronic energy + Delta-G solvation = -29040.749752 eV Core-core repulsion = 24939.970850 eV Total energy + Delta-G solvation = -4100.778902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09167 -41.04782 -40.59948 -37.11453 -36.69598 -36.59838 -34.80204 -33.88090 -31.84150 -30.72944 -29.81915 -29.26634 -27.93353 -27.61112 -26.13682 -25.46702 -23.65569 -22.31329 -21.31085 -20.35663 -20.03393 -19.15796 -18.55974 -18.13980 -17.88235 -17.45895 -17.06072 -16.79011 -16.51019 -16.33102 -15.91861 -15.65757 -15.26496 -14.86434 -14.69721 -14.57551 -14.33063 -14.24493 -14.04407 -13.76748 -13.66512 -13.61166 -13.53389 -13.44293 -13.42434 -13.10006 -12.91589 -12.80208 -12.69377 -12.52258 -12.27431 -11.99848 -11.75726 -11.52029 -11.27061 -10.88406 -10.84828 -10.65306 -9.75204 -9.57948 -9.43461 -8.59692 -8.35285 -6.40791 1.06484 1.31010 1.36473 1.43185 1.44821 1.50147 1.68346 1.96880 2.16575 2.26340 2.30023 2.71749 2.99096 3.43130 3.53794 3.78296 4.01960 4.04813 4.16931 4.20739 4.30408 4.37332 4.39962 4.43716 4.60206 4.62888 4.68516 4.76212 4.81195 4.84909 4.86367 4.88128 4.92265 4.96291 4.97329 5.06917 5.30908 5.41266 5.44526 5.46074 5.58129 6.07274 6.18064 6.22163 6.38070 6.60504 6.62902 6.67759 7.10114 7.15656 7.18763 7.33135 8.81913 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.002267 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.222248 B =12349.041078 C =13415.178421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.112 0.888 4 N -0.716 5.716 5 C 0.321 3.679 6 C -0.323 4.323 7 C 0.093 3.907 8 N -0.374 5.374 9 C 0.125 3.875 10 C 0.482 3.518 11 O -0.574 6.574 12 N -0.621 5.621 13 C 0.087 3.913 14 C 0.065 3.935 15 N -0.383 5.383 16 C 0.492 3.508 17 O -0.593 6.593 18 N -0.598 5.598 19 C 0.068 3.932 20 C 0.223 3.777 21 C -0.537 4.537 22 H 0.025 0.975 23 C 0.007 3.993 24 N -0.947 5.947 25 Si 0.951 3.049 26 H -0.281 1.281 27 H -0.273 1.273 28 H -0.232 1.232 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.395 0.605 33 H 0.164 0.836 34 H 0.228 0.772 35 H 0.177 0.823 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.017 0.983 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.226 8.974 -31.582 35.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 H 0.129 0.871 4 N -0.357 5.357 5 C 0.062 3.938 6 C -0.355 4.355 7 C -0.053 4.053 8 N -0.157 5.157 9 C 0.001 3.999 10 C 0.269 3.731 11 O -0.452 6.452 12 N -0.356 5.356 13 C -0.055 4.055 14 C -0.076 4.076 15 N -0.214 5.214 16 C 0.280 3.720 17 O -0.473 6.473 18 N -0.329 5.329 19 C -0.073 4.073 20 C 0.100 3.900 21 C -0.576 4.576 22 H 0.044 0.956 23 C -0.191 4.191 24 N -0.587 5.587 25 Si 0.773 3.227 26 H -0.207 1.207 27 H -0.198 1.198 28 H -0.155 1.155 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.230 0.770 33 H 0.182 0.818 34 H 0.245 0.755 35 H 0.195 0.805 36 H 0.151 0.849 37 H 0.133 0.867 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.077 0.923 47 H 0.035 0.965 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.037 7.478 -31.625 35.015 hybrid contribution 0.918 -0.675 1.376 1.787 sum -12.119 6.803 -30.249 33.289 Atomic orbital electron populations 1.22434 0.90641 1.03350 1.05435 1.20602 0.96879 0.96195 0.80962 0.87087 1.43493 1.75330 1.12127 1.04742 1.19545 0.95142 0.92268 0.86799 1.21410 1.20817 0.94383 0.98898 1.23130 0.96286 0.93011 0.92826 1.47775 1.52663 1.06729 1.08542 1.21854 0.92332 1.07522 0.78203 1.21484 0.89592 0.78746 0.83290 1.90836 1.65740 1.52046 1.36534 1.47961 1.16524 1.64388 1.06730 1.21673 0.82085 0.97815 1.03975 1.22281 0.98038 1.02591 0.84701 1.77480 1.32189 1.13556 0.98220 1.21346 0.79912 0.84797 0.85985 1.90638 1.40095 1.29684 1.86931 1.47842 1.50101 1.29741 1.05219 1.22285 0.94680 0.86177 1.04187 1.19382 0.93778 0.92726 0.84075 1.21569 1.05252 1.19257 1.11481 0.95612 1.25917 0.95075 0.99522 0.98552 1.70061 1.16650 1.44386 1.27579 0.85672 0.80947 0.78388 0.77650 1.20660 1.19841 1.15501 0.87805 0.89306 0.93040 0.76993 0.81836 0.75548 0.80539 0.84927 0.86661 0.93671 0.94447 0.91205 0.88244 0.88577 0.88932 0.91162 0.88949 0.92310 0.96530 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.14 71.98 0.66 -2.89 16 2 C 0.16 5.18 2.18 44.25 0.10 5.27 16 3 H 0.11 3.20 6.40 -2.39 -0.02 3.18 16 4 N -0.72 -26.11 5.16 -326.96 -1.69 -27.79 16 5 C 0.32 10.88 8.14 133.39 1.09 11.97 16 6 C -0.32 -7.98 9.92 22.12 0.22 -7.76 16 7 C 0.09 1.70 11.43 83.52 0.96 2.66 16 8 N -0.37 -8.89 3.40 -351.83 -1.20 -10.08 16 9 C 0.12 1.65 5.54 85.64 0.47 2.13 16 10 C 0.48 10.73 7.70 87.66 0.68 11.41 16 11 O -0.57 -21.38 15.70 -3.03 -0.05 -21.43 16 12 N -0.62 -8.64 3.27 -871.88 -2.85 -11.50 16 13 C 0.09 1.29 10.16 127.77 1.30 2.59 16 14 C 0.06 0.11 10.21 127.77 1.30 1.42 16 15 N -0.38 -13.62 11.65 -54.54 -0.64 -14.26 16 16 C 0.49 21.26 7.14 87.66 0.63 21.89 16 17 O -0.59 -32.25 15.42 -3.02 -0.05 -32.30 16 18 N -0.60 -24.66 2.86 -851.14 -2.43 -27.09 16 19 C 0.07 1.85 8.80 127.77 1.12 2.98 16 20 C 0.22 11.11 4.23 85.63 0.36 11.48 16 21 C -0.54 -32.72 9.94 25.60 0.25 -32.46 16 22 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 23 C 0.01 0.43 5.47 84.65 0.46 0.89 16 24 N -0.95 -61.91 13.96 21.45 0.30 -61.61 16 25 Si 0.95 45.82 27.47 68.60 1.88 47.70 16 26 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 28 H -0.23 -9.85 6.54 99.48 0.65 -9.20 16 29 H 0.10 1.78 4.53 -2.39 -0.01 1.77 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.40 16.50 7.92 -92.71 -0.73 15.76 16 33 H 0.16 3.19 7.45 -2.91 -0.02 3.17 16 34 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.18 0.23 7.34 -2.39 -0.02 0.21 16 36 H 0.13 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.11 0.71 7.79 -2.39 -0.02 0.69 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.10 -0.36 6.45 -2.39 -0.02 -0.37 16 42 H 0.10 -0.16 7.92 -2.38 -0.02 -0.17 16 43 H 0.09 1.81 6.95 -2.39 -0.02 1.79 16 44 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 45 H 0.09 1.98 6.01 -2.38 -0.01 1.96 16 46 H 0.06 2.62 7.13 -2.39 -0.02 2.60 16 47 H 0.02 0.90 6.85 -2.39 -0.02 0.88 16 48 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -106.50 393.69 3.08 -103.42 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.19 Total: 23.36 kcal Atomic # 6 Polarization: 21.99 SS G_CDS: 9.60 Total: 31.58 kcal Atomic # 7 Polarization: -143.83 SS G_CDS: -8.51 Total: -152.33 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.09 Total: -53.73 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -106.50 3.08 -103.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359073395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.415 kcal (2) G-P(sol) polarization free energy of solvation -106.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds