Wall clock time and date at job start Tue Mar 31 2020 19:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46546 * 2 1 4 4 C 1.50699 * 109.46993 * 119.99904 * 2 1 3 5 5 H 1.08000 * 119.99985 * 120.00336 * 4 2 1 6 6 C 1.37880 * 120.00267 * 300.00049 * 4 2 1 7 7 N 1.31516 * 119.99775 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46830 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47058 * 119.99977 * 8 6 4 11 11 H 1.48494 * 109.47073 * 240.00279 * 8 6 4 12 12 N 1.46500 * 109.47142 * 239.99966 * 2 1 3 13 13 C 1.34777 * 119.99669 * 85.00197 * 12 2 1 14 14 O 1.21595 * 120.00333 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99659 * 179.97438 * 13 12 2 16 16 C 1.40203 * 119.99965 * 179.97438 * 15 13 12 17 17 C 1.40397 * 125.96892 * 359.97438 * 16 15 13 18 18 C 1.35248 * 107.86499 * 179.97438 * 17 16 15 19 19 N 1.34965 * 107.85603 * 0.02562 * 18 17 16 20 20 C 1.46504 * 125.97389 * 179.97438 * 19 18 17 21 21 C 1.53006 * 109.46883 * 124.99890 * 20 19 18 22 22 N 1.46898 * 109.47006 * 180.02562 * 21 20 19 23 23 C 1.47015 * 110.99629 * 293.63553 * 22 21 20 24 24 C 1.53099 * 109.25444 * 177.60965 * 23 22 21 25 25 O 1.43020 * 109.25921 * 56.85026 * 24 23 22 26 26 C 1.43018 * 113.73692 * 301.32545 * 25 24 23 27 27 C 1.47012 * 110.99820 * 170.00535 * 22 21 20 28 28 N 1.31212 * 125.97199 * 180.32803 * 16 15 13 29 29 H 1.09001 * 109.46575 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47335 * 299.99613 * 1 2 3 31 31 H 1.08997 * 109.47166 * 60.00132 * 1 2 3 32 32 H 0.96995 * 120.00172 * 179.97438 * 7 6 4 33 33 H 0.96999 * 120.00164 * 264.99954 * 12 2 1 34 34 H 0.96999 * 120.00174 * 359.97438 * 15 13 12 35 35 H 1.07997 * 126.06976 * 359.97438 * 17 16 15 36 36 H 1.08001 * 126.07103 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.46891 * 5.00325 * 20 19 18 38 38 H 1.08993 * 109.47378 * 244.99697 * 20 19 18 39 39 H 1.09001 * 109.46801 * 300.00349 * 21 20 19 40 40 H 1.09001 * 109.46998 * 59.99945 * 21 20 19 41 41 H 1.09004 * 109.50787 * 297.53890 * 23 22 21 42 42 H 1.08995 * 109.50754 * 57.68018 * 23 22 21 43 43 H 1.09001 * 109.50741 * 296.91648 * 24 23 22 44 44 H 1.09003 * 109.54691 * 176.80502 * 24 23 22 45 45 H 1.08992 * 109.51039 * 298.73989 * 26 25 24 46 46 H 1.08999 * 109.54416 * 178.62484 * 26 25 24 47 47 H 1.09004 * 109.50451 * 302.32320 * 27 22 21 48 48 H 1.08994 * 109.50994 * 62.40703 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1465 -0.1874 4.8165 11 1 1.1660 -1.5867 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8575 1.1615 -2.4118 15 7 2.5969 -0.6534 -3.4574 16 6 2.7303 0.0459 -4.6652 17 6 2.4329 1.4027 -4.8697 18 6 2.6948 1.6943 -6.1642 19 7 3.1405 0.5683 -6.7601 20 6 3.5393 0.4375 -8.1637 21 6 4.9618 -0.1209 -8.2398 22 7 5.3619 -0.2515 -9.6472 23 6 4.5553 -1.2726 -10.3315 24 6 4.9634 -1.3337 -11.8058 25 8 6.3655 -1.6009 -11.8965 26 6 7.1810 -0.6257 -11.2412 27 6 6.7953 -0.5575 -9.7611 28 7 3.1488 -0.4549 -5.8036 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7081 1.1608 3.4844 33 1 2.2491 -1.6318 -1.1526 34 1 2.8282 -1.5944 -3.4137 35 1 2.0610 2.0913 -4.1255 36 1 2.5688 2.6570 -6.6372 37 1 3.5068 1.4158 -8.6433 38 1 2.8552 -0.2404 -8.6741 39 1 5.6459 0.5570 -7.7293 40 1 4.9942 -1.0991 -7.7601 41 1 4.7260 -2.2434 -9.8661 42 1 3.4995 -1.0127 -10.2567 43 1 4.7431 -0.3795 -12.2844 44 1 4.4086 -2.1281 -12.3052 45 1 7.0251 0.3490 -11.7032 46 1 8.2300 -0.9076 -11.3313 47 1 7.3745 0.2244 -9.2698 48 1 7.0018 -1.5163 -9.2858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360029909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:40 Heat of formation + Delta-G solvation = 25.434714 kcal Electronic energy + Delta-G solvation = -28383.559360 eV Core-core repulsion = 24283.189830 eV Total energy + Delta-G solvation = -4100.369529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18467 -40.02855 -39.24486 -36.71787 -35.25373 -34.30698 -32.88931 -32.18893 -31.65223 -30.00910 -29.19182 -28.46468 -26.21180 -25.25285 -24.54788 -23.06448 -22.12210 -21.11020 -20.87483 -20.06408 -19.72900 -17.97169 -17.49171 -16.91867 -16.66429 -16.18138 -15.94451 -15.64466 -15.56873 -15.39981 -14.91245 -14.90137 -14.45752 -14.34140 -14.04698 -13.63027 -13.39740 -13.08771 -12.87553 -12.75708 -12.52497 -12.39654 -11.99348 -11.86042 -11.81086 -11.49498 -11.11256 -11.08001 -10.99468 -10.78911 -10.53263 -10.47052 -10.27464 -10.23873 -10.15277 -9.35261 -9.04592 -8.97202 -8.67044 -8.57600 -8.16501 -7.75359 -6.13304 -4.22166 1.95575 2.20581 2.99872 3.08909 3.23741 3.31608 3.34109 3.38175 3.51004 3.99703 4.27542 4.32148 4.38376 4.43619 4.46631 4.66354 4.77877 4.79750 4.82987 4.91244 5.01108 5.05730 5.15093 5.18705 5.19671 5.29171 5.34788 5.44539 5.47554 5.63224 5.88141 6.02263 6.33586 6.36437 6.52728 6.64609 6.77573 6.97986 7.02767 7.11859 7.18218 7.22729 7.46118 7.60413 7.71678 7.90738 8.08894 8.15766 8.72493 8.84059 9.22376 9.46031 10.92829 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.001697 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.210280 B =16494.480942 C =17020.183569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.716 5.716 13 C 0.702 3.298 14 O -0.575 6.575 15 N -0.657 5.657 16 C 0.332 3.668 17 C -0.259 4.259 18 C 0.057 3.943 19 N -0.379 5.379 20 C 0.149 3.851 21 C 0.044 3.956 22 N -0.536 5.536 23 C 0.011 3.989 24 C 0.064 3.936 25 O -0.386 6.386 26 C 0.064 3.936 27 C 0.018 3.982 28 N -0.340 5.340 29 H 0.026 0.974 30 H 0.091 0.909 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.406 0.594 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -2.253 -27.498 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.367 5.367 13 C 0.401 3.599 14 O -0.451 6.451 15 N -0.309 5.309 16 C 0.075 3.925 17 C -0.290 4.290 18 C -0.087 4.087 19 N -0.164 5.164 20 C 0.026 3.974 21 C -0.085 4.085 22 N -0.262 5.262 23 C -0.117 4.117 24 C -0.013 4.013 25 O -0.305 6.305 26 C -0.013 4.013 27 C -0.110 4.110 28 N -0.170 5.170 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.241 0.759 35 H 0.193 0.807 36 H 0.191 0.809 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.286 -1.768 -28.312 29.553 hybrid contribution 0.240 -1.230 1.911 2.285 sum 8.525 -2.998 -26.402 27.906 Atomic orbital electron populations 1.22111 0.98446 0.99166 1.01010 1.18724 0.90914 0.93814 0.78679 0.93098 1.21242 1.32442 1.13275 0.90191 0.91979 1.24879 0.94829 0.94979 0.99036 1.69911 1.35822 1.22443 1.23818 0.86373 0.78575 0.79498 0.82516 1.19768 1.20885 1.20880 1.45844 1.68581 1.13414 1.08907 1.15963 0.78637 0.85306 0.79967 1.90797 1.56494 1.14132 1.83726 1.41980 1.69246 1.13459 1.06179 1.18929 0.96349 0.91436 0.85795 1.21997 1.14027 0.96127 0.96806 1.22574 1.00072 0.92296 0.93805 1.47944 1.53465 1.06530 1.08438 1.21470 0.95518 1.03431 0.76936 1.22358 0.96157 1.01728 0.88234 1.62161 1.03945 1.46279 1.13768 1.22913 0.98919 0.94201 0.95706 1.22677 0.82003 1.01948 0.94674 1.88002 1.16963 1.49551 1.75961 1.22671 0.95185 0.92824 0.90587 1.22793 0.88802 1.01164 0.98242 1.77251 1.31410 1.11518 0.96870 0.95486 0.89051 0.96474 0.92594 0.78039 0.75946 0.80693 0.80914 0.87919 0.90317 0.89915 0.92792 0.93456 0.89266 0.92123 0.88315 0.92110 0.88303 0.89352 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.28 7.06 2.56 -69.08 -0.18 6.89 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.72 -14.85 5.07 -59.81 -0.30 -15.15 16 13 C 0.70 14.41 8.50 -86.92 -0.74 13.67 16 14 O -0.58 -13.65 13.13 5.28 0.07 -13.58 16 15 N -0.66 -11.05 5.46 -15.50 -0.08 -11.14 16 16 C 0.33 5.64 8.11 -154.35 -1.25 4.39 16 17 C -0.26 -4.28 9.61 -39.83 -0.38 -4.66 16 18 C 0.06 0.71 11.44 -17.24 -0.20 0.51 16 19 N -0.38 -4.64 3.67 -61.37 -0.23 -4.86 16 20 C 0.15 1.23 6.44 -4.04 -0.03 1.20 16 21 C 0.04 0.37 5.14 -3.82 -0.02 0.35 16 22 N -0.54 -3.87 4.73 -234.30 -1.11 -4.98 16 23 C 0.01 0.07 5.44 -3.71 -0.02 0.05 16 24 C 0.06 0.40 7.01 37.21 0.26 0.66 16 25 O -0.39 -3.18 10.83 -35.23 -0.38 -3.56 16 26 C 0.06 0.40 7.01 37.21 0.26 0.66 16 27 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 28 N -0.34 -5.19 12.44 31.44 0.39 -4.79 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 6.87 8.55 -40.82 -0.35 6.52 16 34 H 0.41 5.59 8.84 -40.82 -0.36 5.23 16 35 H 0.18 3.28 5.91 -52.49 -0.31 2.97 16 36 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 38 H 0.08 0.61 6.52 -51.93 -0.34 0.27 16 39 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 40 H 0.05 0.56 8.12 -51.93 -0.42 0.13 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.49 6.38 -51.93 -0.33 0.16 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -32.67 389.09 -9.96 -42.63 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.42 Total: 10.18 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.36 Total: 7.90 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.70 Total: -64.90 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.31 Total: -17.14 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.67 -9.96 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360029909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.060 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds