Wall clock time and date at job start Tue Mar 31 2020 19:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46546 * 2 1 4 4 C 1.50699 * 109.46993 * 119.99904 * 2 1 3 5 5 H 1.08000 * 119.99985 * 120.00336 * 4 2 1 6 6 C 1.37880 * 120.00267 * 300.00049 * 4 2 1 7 7 N 1.31516 * 119.99775 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46830 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47058 * 119.99977 * 8 6 4 11 11 H 1.48494 * 109.47073 * 240.00279 * 8 6 4 12 12 N 1.46500 * 109.47142 * 239.99966 * 2 1 3 13 13 C 1.34777 * 119.99669 * 85.00197 * 12 2 1 14 14 O 1.21595 * 120.00333 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99659 * 179.97438 * 13 12 2 16 16 C 1.40203 * 119.99965 * 179.97438 * 15 13 12 17 17 C 1.40397 * 125.96892 * 359.97438 * 16 15 13 18 18 C 1.35248 * 107.86499 * 179.97438 * 17 16 15 19 19 N 1.34965 * 107.85603 * 0.02562 * 18 17 16 20 20 C 1.46504 * 125.97389 * 179.97438 * 19 18 17 21 21 C 1.53006 * 109.46883 * 124.99890 * 20 19 18 22 22 N 1.46898 * 109.47006 * 180.02562 * 21 20 19 23 23 C 1.47015 * 110.99629 * 293.63553 * 22 21 20 24 24 C 1.53099 * 109.25444 * 177.60965 * 23 22 21 25 25 O 1.43020 * 109.25921 * 56.85026 * 24 23 22 26 26 C 1.43018 * 113.73692 * 301.32545 * 25 24 23 27 27 C 1.47012 * 110.99820 * 170.00535 * 22 21 20 28 28 N 1.31212 * 125.97199 * 180.32803 * 16 15 13 29 29 H 1.09001 * 109.46575 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47335 * 299.99613 * 1 2 3 31 31 H 1.08997 * 109.47166 * 60.00132 * 1 2 3 32 32 H 0.96995 * 120.00172 * 179.97438 * 7 6 4 33 33 H 0.96999 * 120.00164 * 264.99954 * 12 2 1 34 34 H 0.96999 * 120.00174 * 359.97438 * 15 13 12 35 35 H 1.07997 * 126.06976 * 359.97438 * 17 16 15 36 36 H 1.08001 * 126.07103 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.46891 * 5.00325 * 20 19 18 38 38 H 1.08993 * 109.47378 * 244.99697 * 20 19 18 39 39 H 1.09001 * 109.46801 * 300.00349 * 21 20 19 40 40 H 1.09001 * 109.46998 * 59.99945 * 21 20 19 41 41 H 1.09004 * 109.50787 * 297.53890 * 23 22 21 42 42 H 1.08995 * 109.50754 * 57.68018 * 23 22 21 43 43 H 1.09001 * 109.50741 * 296.91648 * 24 23 22 44 44 H 1.09003 * 109.54691 * 176.80502 * 24 23 22 45 45 H 1.08992 * 109.51039 * 298.73989 * 26 25 24 46 46 H 1.08999 * 109.54416 * 178.62484 * 26 25 24 47 47 H 1.09004 * 109.50451 * 302.32320 * 27 22 21 48 48 H 1.08994 * 109.50994 * 62.40703 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1465 -0.1874 4.8165 11 1 1.1660 -1.5867 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8575 1.1615 -2.4118 15 7 2.5969 -0.6534 -3.4574 16 6 2.7303 0.0459 -4.6652 17 6 2.4329 1.4027 -4.8697 18 6 2.6948 1.6943 -6.1642 19 7 3.1405 0.5683 -6.7601 20 6 3.5393 0.4375 -8.1637 21 6 4.9618 -0.1209 -8.2398 22 7 5.3619 -0.2515 -9.6472 23 6 4.5553 -1.2726 -10.3315 24 6 4.9634 -1.3337 -11.8058 25 8 6.3655 -1.6009 -11.8965 26 6 7.1810 -0.6257 -11.2412 27 6 6.7953 -0.5575 -9.7611 28 7 3.1488 -0.4549 -5.8036 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7081 1.1608 3.4844 33 1 2.2491 -1.6318 -1.1526 34 1 2.8282 -1.5944 -3.4137 35 1 2.0610 2.0913 -4.1255 36 1 2.5688 2.6570 -6.6372 37 1 3.5068 1.4158 -8.6433 38 1 2.8552 -0.2404 -8.6741 39 1 5.6459 0.5570 -7.7293 40 1 4.9942 -1.0991 -7.7601 41 1 4.7260 -2.2434 -9.8661 42 1 3.4995 -1.0127 -10.2567 43 1 4.7431 -0.3795 -12.2844 44 1 4.4086 -2.1281 -12.3052 45 1 7.0251 0.3490 -11.7032 46 1 8.2300 -0.9076 -11.3313 47 1 7.3745 0.2244 -9.2698 48 1 7.0018 -1.5163 -9.2858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360029909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:39 Heat of formation + Delta-G solvation = 1.064128 kcal Electronic energy + Delta-G solvation = -28384.616148 eV Core-core repulsion = 24283.189830 eV Total energy + Delta-G solvation = -4101.426317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34784 -40.88549 -40.51220 -37.43859 -36.91273 -35.81196 -34.43150 -33.53172 -32.17086 -31.21667 -30.64566 -29.64395 -27.32819 -26.96076 -25.05804 -24.28172 -23.27930 -22.42137 -21.57551 -21.43623 -21.16662 -19.58328 -18.50346 -18.02609 -17.58666 -17.26923 -17.05840 -16.72118 -16.62873 -16.32078 -16.06280 -15.91926 -15.83956 -15.26171 -15.21492 -14.98706 -14.45614 -14.34974 -14.15389 -13.83711 -13.77382 -13.51097 -13.13956 -12.97894 -12.89739 -12.71494 -12.62804 -12.37414 -12.27916 -12.20550 -12.09297 -11.75022 -11.70323 -11.45837 -11.07405 -11.04614 -10.70946 -10.59646 -9.95070 -9.76425 -9.58023 -9.08913 -8.16211 -6.32855 0.85190 1.09253 1.46076 1.47415 1.59066 1.68405 1.95030 2.41822 2.45714 2.72080 2.95217 3.14583 3.38696 3.61670 3.72341 3.90323 3.93812 4.03792 4.17472 4.20770 4.27129 4.32218 4.36884 4.54230 4.62437 4.69731 4.75362 4.78203 4.79769 4.81712 4.88934 4.90162 4.96256 4.99995 5.11499 5.21344 5.38683 5.60266 5.66657 5.72601 5.78806 5.81646 5.88279 6.09000 6.13151 6.16832 6.19493 6.71033 6.76818 7.22128 7.35163 7.64121 8.90530 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.001697 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.210280 B =16494.480942 C =17020.183569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.288 3.712 3 H 0.005 0.995 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.711 5.711 13 C 0.704 3.296 14 O -0.610 6.610 15 N -0.643 5.643 16 C 0.306 3.694 17 C -0.304 4.304 18 C 0.089 3.911 19 N -0.367 5.367 20 C 0.143 3.857 21 C 0.052 3.948 22 N -0.531 5.531 23 C 0.010 3.990 24 C 0.062 3.938 25 O -0.409 6.409 26 C 0.064 3.936 27 C 0.017 3.983 28 N -0.348 5.348 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.013 0.987 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.420 0.580 35 H 0.147 0.853 36 H 0.221 0.779 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.009 -2.913 -29.446 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.022 0.978 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.364 5.364 13 C 0.403 3.597 14 O -0.489 6.489 15 N -0.295 5.295 16 C 0.050 3.950 17 C -0.335 4.335 18 C -0.057 4.057 19 N -0.151 5.151 20 C 0.023 3.977 21 C -0.076 4.076 22 N -0.256 5.256 23 C -0.118 4.118 24 C -0.014 4.014 25 O -0.328 6.328 26 C -0.013 4.013 27 C -0.111 4.111 28 N -0.179 5.179 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.239 0.761 34 H 0.257 0.743 35 H 0.164 0.836 36 H 0.238 0.762 37 H 0.154 0.846 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.116 0.884 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.089 -2.499 -30.324 31.755 hybrid contribution 0.044 -0.978 2.312 2.511 sum 9.134 -3.476 -28.011 29.667 Atomic orbital electron populations 1.21928 0.98227 0.99494 0.99717 1.18319 0.91016 0.91859 0.80297 0.97756 1.21545 1.32586 1.13598 0.90612 0.90839 1.25771 0.94915 0.95617 1.02204 1.70052 1.36880 1.23857 1.24588 0.85277 0.78040 0.78457 0.78412 1.18522 1.21017 1.20438 1.45437 1.68835 1.14026 1.08068 1.15971 0.78399 0.84838 0.80511 1.90792 1.57861 1.15835 1.84435 1.41572 1.68482 1.13974 1.05512 1.19109 0.97966 0.91918 0.86049 1.21882 1.17216 0.95937 0.98449 1.23079 0.96780 0.93613 0.92273 1.48314 1.51728 1.05805 1.09258 1.21855 0.95420 1.05717 0.74691 1.22199 0.96265 1.00333 0.88831 1.62213 1.04296 1.46371 1.12730 1.22969 0.99629 0.93277 0.95891 1.22805 0.81290 1.02962 0.94362 1.87974 1.18048 1.50507 1.76280 1.22779 0.95685 0.92910 0.89886 1.22848 0.88695 1.00789 0.98809 1.77200 1.31165 1.12803 0.96740 0.94156 0.91245 0.96783 0.92500 0.76123 0.74279 0.83576 0.76244 0.84577 0.89139 0.90320 0.95156 0.95041 0.87842 0.91209 0.87082 0.91329 0.87059 0.88374 0.94980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.29 14.95 2.56 44.25 0.11 15.06 16 3 H 0.00 0.28 7.58 -2.39 -0.02 0.26 16 4 C -0.55 -28.66 8.73 25.60 0.22 -28.44 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 8 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.71 -29.95 5.07 -461.40 -2.34 -32.29 16 13 C 0.70 29.72 8.50 179.05 1.52 31.24 16 14 O -0.61 -30.40 13.13 -4.01 -0.05 -30.45 16 15 N -0.64 -21.90 5.46 -321.22 -1.75 -23.66 16 16 C 0.31 10.40 8.11 133.31 1.08 11.48 16 17 C -0.30 -10.10 9.61 22.11 0.21 -9.88 16 18 C 0.09 2.01 11.44 83.52 0.96 2.96 16 19 N -0.37 -8.11 3.67 -348.09 -1.28 -9.39 16 20 C 0.14 1.91 6.44 86.38 0.56 2.46 16 21 C 0.05 0.78 5.14 86.31 0.44 1.22 16 22 N -0.53 -6.57 4.73 -895.19 -4.23 -10.80 16 23 C 0.01 0.12 5.44 86.31 0.47 0.59 16 24 C 0.06 0.65 7.01 72.02 0.50 1.15 16 25 O -0.41 -6.13 10.83 -148.98 -1.61 -7.75 16 26 C 0.06 0.69 7.01 72.02 0.50 1.19 16 27 C 0.02 0.20 5.64 86.32 0.49 0.69 16 28 N -0.35 -10.28 12.44 -54.43 -0.68 -10.96 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 31 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.40 14.19 8.55 -92.71 -0.79 13.39 16 34 H 0.42 11.48 8.84 -92.71 -0.82 10.66 16 35 H 0.15 5.77 5.91 -2.91 -0.02 5.75 16 36 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.14 1.01 8.07 -2.39 -0.02 0.99 16 38 H 0.09 1.08 6.52 -2.39 -0.02 1.06 16 39 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 40 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 41 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.10 0.86 6.38 -2.39 -0.02 0.84 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.10 0.97 8.09 -2.38 -0.02 0.95 16 48 H 0.03 0.47 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -73.25 389.09 -2.11 -75.36 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.62 Total: 33.07 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 8.19 Total: 24.82 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -10.04 Total: -138.92 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.67 Total: -38.20 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -73.25 -2.11 -75.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360029909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.429 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds