Wall clock time and date at job start Tue Mar 31 2020 19:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47554 * 2 1 4 4 C 1.52999 * 109.46910 * 239.99529 * 2 1 3 5 5 C 1.50704 * 109.46862 * 175.00487 * 4 2 1 6 6 H 1.07994 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00177 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00293 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99660 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47086 * 90.00444 * 9 7 5 11 11 H 1.48499 * 109.47160 * 209.99887 * 9 7 5 12 12 H 1.48494 * 109.47336 * 330.00451 * 9 7 5 13 13 N 1.46902 * 109.46913 * 119.99856 * 2 1 3 14 14 C 1.47062 * 111.00032 * 295.00169 * 13 2 1 15 15 C 1.53446 * 109.51064 * 195.99018 * 14 13 2 16 16 N 1.46782 * 108.06301 * 308.75032 * 15 14 13 17 17 C 1.38215 * 123.20570 * 18.79531 * 16 15 14 18 18 N 1.28681 * 108.78412 * 177.97120 * 17 16 15 19 19 N 1.40390 * 108.10734 * 0.37927 * 18 17 16 20 20 C 1.46496 * 126.31912 * 180.51752 * 19 18 17 21 21 C 1.50694 * 109.47351 * 270.10443 * 20 19 18 22 22 O 1.21286 * 120.00223 * 0.02562 * 21 20 19 23 23 N 1.34779 * 120.00191 * 179.97438 * 21 20 19 24 24 C 1.46494 * 119.99920 * 180.02562 * 23 21 20 25 25 C 1.46497 * 119.99990 * 0.02562 * 23 21 20 26 26 C 1.34031 * 128.37624 * 197.84969 * 16 15 14 27 27 O 1.21813 * 126.34925 * 2.17370 * 26 16 15 28 28 C 1.47406 * 110.99850 * 58.88450 * 13 2 1 29 29 H 1.09010 * 109.46970 * 59.99859 * 1 2 3 30 30 H 1.08997 * 109.47554 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47319 * 300.00696 * 1 2 3 32 32 H 1.09002 * 109.47638 * 295.00093 * 4 2 1 33 33 H 1.09004 * 109.47228 * 55.00742 * 4 2 1 34 34 H 0.96996 * 120.00165 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47274 * 75.97473 * 14 13 2 36 36 H 1.09001 * 109.46646 * 315.99664 * 14 13 2 37 37 H 1.08997 * 109.74355 * 189.11509 * 15 14 13 38 38 H 1.08999 * 109.78546 * 68.41446 * 15 14 13 39 39 H 1.09004 * 109.47011 * 30.10809 * 20 19 18 40 40 H 1.08997 * 109.47090 * 150.10049 * 20 19 18 41 41 H 1.09001 * 109.47739 * 89.99986 * 24 23 21 42 42 H 1.09002 * 109.47283 * 209.99905 * 24 23 21 43 43 H 1.09005 * 109.47497 * 330.00060 * 24 23 21 44 44 H 1.09000 * 109.47030 * 359.97438 * 25 23 21 45 45 H 1.08998 * 109.47353 * 119.99952 * 25 23 21 46 46 H 1.09006 * 109.47210 * 240.00368 * 25 23 21 47 47 H 1.08998 * 109.77142 * 304.22916 * 28 13 2 48 48 H 1.08997 * 109.77422 * 65.02898 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0857 -0.5395 7 6 4.2304 -1.1929 -2.3582 8 7 5.5410 -1.0998 -2.4138 9 14 3.3014 -2.1081 -3.6957 10 1 2.9399 -1.1629 -4.7826 11 1 4.1602 -3.1882 -4.2445 12 1 2.0658 -2.7005 -3.1236 13 7 2.0196 -0.6925 1.1995 14 6 1.6482 0.0400 2.4194 15 6 2.4904 -0.4666 3.5978 16 7 2.3863 -1.9303 3.6356 17 6 1.9720 -2.6878 2.5563 18 7 2.0242 -3.9323 2.8791 19 7 2.4745 -4.0204 4.2059 20 6 2.6896 -5.2522 4.9692 21 6 1.4191 -5.6259 5.6883 22 8 0.4309 -4.9319 5.5740 23 7 1.3804 -6.7319 6.4576 24 6 0.1451 -7.0955 7.1561 25 6 2.5737 -7.5705 6.5952 26 6 2.6712 -2.7588 4.6499 27 8 3.0435 -2.4353 5.7637 28 6 1.5252 -2.0803 1.2470 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 6.0254 -1.5066 -3.1491 35 1 0.5914 -0.1212 2.6325 36 1 1.8309 1.1046 2.2737 37 1 2.1109 -0.0464 4.5292 38 1 3.5315 -0.1750 3.4595 39 1 2.9724 -6.0561 4.2896 40 1 3.4859 -5.0945 5.6967 41 1 -0.4576 -7.7405 6.5167 42 1 0.3906 -7.6240 8.0772 43 1 -0.4170 -6.1924 7.3941 44 1 3.3869 -7.1446 6.0074 45 1 2.8676 -7.6150 7.6439 46 1 2.3545 -8.5761 6.2363 47 1 0.4367 -2.0861 1.1901 48 1 1.9417 -2.6488 0.4155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578631820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:30 Heat of formation + Delta-G solvation = 42.796912 kcal Electronic energy + Delta-G solvation = -30388.439016 eV Core-core repulsion = 26288.822368 eV Total energy + Delta-G solvation = -4099.616648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.39838 -40.03120 -38.62956 -37.00483 -35.87664 -35.25512 -32.98583 -32.45021 -31.28435 -29.63895 -28.58298 -28.12137 -27.68375 -26.36032 -24.92877 -23.57597 -22.34473 -21.62756 -20.30582 -19.72945 -18.86600 -17.72165 -17.38904 -16.68921 -16.61468 -16.36109 -16.17287 -15.66089 -15.53164 -15.12983 -14.69547 -14.37005 -14.29477 -13.89951 -13.76799 -13.46798 -13.05723 -12.99683 -12.93960 -12.75792 -12.53233 -12.42370 -12.31905 -12.24948 -12.19809 -12.11748 -11.83699 -11.50254 -11.21504 -11.09945 -10.82151 -10.40994 -10.36476 -10.07188 -9.74998 -9.67477 -9.63518 -9.14111 -9.06802 -8.49365 -8.41205 -7.90646 -5.97246 -3.93183 1.73793 2.13402 2.32676 2.61600 2.96172 3.16996 3.31587 3.40674 3.41090 3.91676 4.16491 4.43878 4.48415 4.61878 4.68492 4.78499 4.87727 4.91953 4.96815 5.04214 5.21404 5.22842 5.24258 5.36010 5.39305 5.49240 5.49334 5.52013 5.61649 5.66766 5.75492 5.83876 5.95373 6.01780 6.07082 6.21064 6.25064 6.34062 6.56069 6.64799 6.91230 6.93620 7.13276 7.34433 7.49926 7.81618 7.82379 7.84912 8.20627 8.62548 9.14651 9.64813 11.16404 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.003040 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.647171 B = 9207.083045 C = 9887.874857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.099 3.901 3 H 0.087 0.913 4 C -0.011 4.011 5 C -0.498 4.498 6 H 0.080 0.920 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.508 5.508 14 C 0.034 3.966 15 C 0.140 3.860 16 N -0.548 5.548 17 C 0.305 3.695 18 N -0.278 5.278 19 N -0.446 5.446 20 C 0.150 3.850 21 C 0.497 3.503 22 O -0.520 6.520 23 N -0.624 5.624 24 C 0.087 3.913 25 C 0.073 3.927 26 C 0.660 3.340 27 O -0.564 6.564 28 C 0.129 3.871 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 -9.182 15.918 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.008 4.008 3 H 0.105 0.895 4 C -0.048 4.048 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.232 5.232 14 C -0.095 4.095 15 C 0.018 3.982 16 N -0.276 5.276 17 C 0.026 3.974 18 N -0.100 5.100 19 N -0.266 5.266 20 C 0.024 3.976 21 C 0.283 3.717 22 O -0.394 6.394 23 N -0.360 5.360 24 C -0.056 4.056 25 C -0.070 4.070 26 C 0.360 3.640 27 O -0.439 6.439 28 C -0.001 4.001 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.793 -9.616 16.274 20.847 hybrid contribution -1.013 -0.068 -0.379 1.084 sum -9.807 -9.684 15.895 21.038 Atomic orbital electron populations 1.22618 0.99102 1.01713 1.01714 1.21793 0.90215 0.98837 0.89943 0.89475 1.19752 0.98231 0.95377 0.91457 1.21015 0.89189 1.34464 1.08937 0.90211 1.25011 0.94658 0.96150 0.97791 1.69900 1.06486 1.45760 1.32226 0.86927 0.80266 0.80090 0.82806 1.20556 1.21582 1.19134 1.62380 1.59066 1.00020 1.01762 1.22553 0.96902 1.00022 0.90015 1.21962 1.02875 0.74030 0.99360 1.45984 1.60580 1.09083 1.11989 1.24398 0.94619 0.86610 0.91746 1.76711 1.22404 1.16153 0.94686 1.48245 1.63280 1.05141 1.09904 1.21131 0.95783 0.85353 0.95367 1.21159 0.90861 0.80364 0.79353 1.90736 1.36295 1.50837 1.61514 1.47722 1.13473 1.25843 1.48996 1.21612 0.86137 1.01577 0.96243 1.21918 0.86966 0.95380 1.02720 1.16337 0.81530 0.81652 0.84504 1.91029 1.55116 1.79501 1.18261 1.21054 0.98463 0.90834 0.89719 0.91794 0.92652 0.93373 0.96344 0.96253 0.92952 0.93816 0.88000 0.89227 0.88976 0.85724 0.85942 0.92639 0.91114 0.90579 0.90179 0.91544 0.91506 0.90891 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 8.53 37.16 0.32 -2.27 16 2 C 0.10 1.66 2.27 -67.71 -0.15 1.51 16 3 H 0.09 1.48 7.98 -51.93 -0.41 1.06 16 4 C -0.01 -0.23 3.33 -27.88 -0.09 -0.32 16 5 C -0.50 -13.10 9.39 -34.44 -0.32 -13.42 16 6 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 N -0.51 -8.35 4.36 -226.99 -0.99 -9.34 16 14 C 0.03 0.44 4.82 -3.50 -0.02 0.43 16 15 C 0.14 1.97 7.17 -3.66 -0.03 1.94 16 16 N -0.55 -9.42 3.14 -117.47 -0.37 -9.79 16 17 C 0.31 5.28 7.85 -153.72 -1.21 4.07 16 18 N -0.28 -4.91 12.51 33.13 0.41 -4.49 16 19 N -0.45 -7.54 3.12 -66.46 -0.21 -7.75 16 20 C 0.15 1.83 5.18 -5.20 -0.03 1.80 16 21 C 0.50 6.64 7.74 -10.99 -0.09 6.56 16 22 O -0.52 -9.37 16.01 5.55 0.09 -9.28 16 23 N -0.62 -5.84 3.27 -189.52 -0.62 -6.47 16 24 C 0.09 0.70 10.48 59.84 0.63 1.32 16 25 C 0.07 0.37 10.60 59.85 0.63 1.00 16 26 C 0.66 12.33 8.67 -87.22 -0.76 11.58 16 27 O -0.56 -11.55 17.85 5.09 0.09 -11.46 16 28 C 0.13 2.09 5.03 -4.51 -0.02 2.07 16 29 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.05 0.73 6.30 -51.93 -0.33 0.40 16 31 H 0.05 0.56 6.90 -51.93 -0.36 0.20 16 32 H 0.02 0.39 5.35 -51.93 -0.28 0.11 16 33 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.04 0.54 7.21 -51.93 -0.37 0.16 16 36 H 0.10 1.15 7.89 -51.93 -0.41 0.74 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.12 1.14 7.79 -51.93 -0.40 0.73 16 40 H 0.12 1.24 7.76 -51.93 -0.40 0.83 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 43 H 0.08 0.76 7.42 -51.93 -0.39 0.38 16 44 H 0.08 0.32 5.77 -51.93 -0.30 0.02 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 1.04 6.09 -51.93 -0.32 0.73 16 48 H 0.13 2.30 6.52 -51.93 -0.34 1.96 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -37.53 382.73 -8.19 -45.72 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.24 Total: -0.55 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: -1.23 Total: 17.97 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -1.00 Total: -64.32 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.18 Total: -20.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.53 -8.19 -45.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578631820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.517 kcal (2) G-P(sol) polarization free energy of solvation -37.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds