Wall clock time and date at job start Tue Mar 31 2020 19:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47554 * 2 1 4 4 C 1.52999 * 109.46910 * 239.99529 * 2 1 3 5 5 C 1.50704 * 109.46862 * 175.00487 * 4 2 1 6 6 H 1.07994 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00177 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00293 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99660 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47086 * 90.00444 * 9 7 5 11 11 H 1.48499 * 109.47160 * 209.99887 * 9 7 5 12 12 H 1.48494 * 109.47336 * 330.00451 * 9 7 5 13 13 N 1.46902 * 109.46913 * 119.99856 * 2 1 3 14 14 C 1.47062 * 111.00032 * 295.00169 * 13 2 1 15 15 C 1.53446 * 109.51064 * 195.99018 * 14 13 2 16 16 N 1.46782 * 108.06301 * 308.75032 * 15 14 13 17 17 C 1.38215 * 123.20570 * 18.79531 * 16 15 14 18 18 N 1.28681 * 108.78412 * 177.97120 * 17 16 15 19 19 N 1.40390 * 108.10734 * 0.37927 * 18 17 16 20 20 C 1.46496 * 126.31912 * 180.51752 * 19 18 17 21 21 C 1.50694 * 109.47351 * 270.10443 * 20 19 18 22 22 O 1.21286 * 120.00223 * 0.02562 * 21 20 19 23 23 N 1.34779 * 120.00191 * 179.97438 * 21 20 19 24 24 C 1.46494 * 119.99920 * 180.02562 * 23 21 20 25 25 C 1.46497 * 119.99990 * 0.02562 * 23 21 20 26 26 C 1.34031 * 128.37624 * 197.84969 * 16 15 14 27 27 O 1.21813 * 126.34925 * 2.17370 * 26 16 15 28 28 C 1.47406 * 110.99850 * 58.88450 * 13 2 1 29 29 H 1.09010 * 109.46970 * 59.99859 * 1 2 3 30 30 H 1.08997 * 109.47554 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47319 * 300.00696 * 1 2 3 32 32 H 1.09002 * 109.47638 * 295.00093 * 4 2 1 33 33 H 1.09004 * 109.47228 * 55.00742 * 4 2 1 34 34 H 0.96996 * 120.00165 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47274 * 75.97473 * 14 13 2 36 36 H 1.09001 * 109.46646 * 315.99664 * 14 13 2 37 37 H 1.08997 * 109.74355 * 189.11509 * 15 14 13 38 38 H 1.08999 * 109.78546 * 68.41446 * 15 14 13 39 39 H 1.09004 * 109.47011 * 30.10809 * 20 19 18 40 40 H 1.08997 * 109.47090 * 150.10049 * 20 19 18 41 41 H 1.09001 * 109.47739 * 89.99986 * 24 23 21 42 42 H 1.09002 * 109.47283 * 209.99905 * 24 23 21 43 43 H 1.09005 * 109.47497 * 330.00060 * 24 23 21 44 44 H 1.09000 * 109.47030 * 359.97438 * 25 23 21 45 45 H 1.08998 * 109.47353 * 119.99952 * 25 23 21 46 46 H 1.09006 * 109.47210 * 240.00368 * 25 23 21 47 47 H 1.08998 * 109.77142 * 304.22916 * 28 13 2 48 48 H 1.08997 * 109.77422 * 65.02898 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0857 -0.5395 7 6 4.2304 -1.1929 -2.3582 8 7 5.5410 -1.0998 -2.4138 9 14 3.3014 -2.1081 -3.6957 10 1 2.9399 -1.1629 -4.7826 11 1 4.1602 -3.1882 -4.2445 12 1 2.0658 -2.7005 -3.1236 13 7 2.0196 -0.6925 1.1995 14 6 1.6482 0.0400 2.4194 15 6 2.4904 -0.4666 3.5978 16 7 2.3863 -1.9303 3.6356 17 6 1.9720 -2.6878 2.5563 18 7 2.0242 -3.9323 2.8791 19 7 2.4745 -4.0204 4.2059 20 6 2.6896 -5.2522 4.9692 21 6 1.4191 -5.6259 5.6883 22 8 0.4309 -4.9319 5.5740 23 7 1.3804 -6.7319 6.4576 24 6 0.1451 -7.0955 7.1561 25 6 2.5737 -7.5705 6.5952 26 6 2.6712 -2.7588 4.6499 27 8 3.0435 -2.4353 5.7637 28 6 1.5252 -2.0803 1.2470 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 6.0254 -1.5066 -3.1491 35 1 0.5914 -0.1212 2.6325 36 1 1.8309 1.1046 2.2737 37 1 2.1109 -0.0464 4.5292 38 1 3.5315 -0.1750 3.4595 39 1 2.9724 -6.0561 4.2896 40 1 3.4859 -5.0945 5.6967 41 1 -0.4576 -7.7405 6.5167 42 1 0.3906 -7.6240 8.0772 43 1 -0.4170 -6.1924 7.3941 44 1 3.3869 -7.1446 6.0074 45 1 2.8676 -7.6150 7.6439 46 1 2.3545 -8.5761 6.2363 47 1 0.4367 -2.0861 1.1901 48 1 1.9417 -2.6488 0.4155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578631820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:29 Heat of formation + Delta-G solvation = 15.233531 kcal Electronic energy + Delta-G solvation = -30389.634254 eV Core-core repulsion = 26288.822368 eV Total energy + Delta-G solvation = -4100.811886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.70342 -40.99264 -39.89177 -38.42332 -36.76890 -36.50648 -34.75039 -33.77071 -32.78679 -30.68831 -29.87128 -29.49756 -28.51914 -27.28278 -25.95704 -25.02994 -23.87806 -22.89765 -21.68668 -20.66935 -20.14784 -18.80094 -18.70959 -18.49014 -17.80513 -17.45835 -17.13394 -16.87874 -16.71740 -16.31740 -16.22039 -15.74761 -15.59692 -14.94661 -14.72632 -14.66326 -14.49179 -14.17465 -14.03138 -13.78500 -13.56812 -13.50470 -13.42885 -13.42409 -13.22718 -13.08081 -13.04322 -12.92943 -12.55452 -12.45454 -12.29972 -11.98820 -11.56560 -11.55612 -11.46137 -11.27714 -11.03741 -10.80667 -10.61275 -9.81284 -9.73832 -9.11638 -8.10972 -6.09837 0.56633 0.82804 1.35768 1.43096 1.43294 1.46016 1.55088 1.84810 2.04801 2.47961 2.69642 3.24431 3.31121 3.34863 3.49151 3.70940 3.96301 3.99187 4.12649 4.21013 4.21403 4.30161 4.33848 4.36852 4.45262 4.47903 4.56347 4.64360 4.68423 4.73415 4.78036 4.81111 4.85000 4.89479 4.97393 5.05653 5.13656 5.25984 5.29477 5.36023 5.44053 5.61691 5.80934 6.05970 6.13864 6.20908 6.49088 6.54230 6.82050 6.94799 7.00450 7.51480 9.06256 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.003040 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.647171 B = 9207.083045 C = 9887.874857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.083 0.917 4 C -0.012 4.012 5 C -0.486 4.486 6 H 0.039 0.961 7 C -0.003 4.003 8 N -0.960 5.960 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.298 1.298 12 H -0.241 1.241 13 N -0.535 5.535 14 C 0.042 3.958 15 C 0.133 3.867 16 N -0.550 5.550 17 C 0.297 3.703 18 N -0.290 5.290 19 N -0.445 5.445 20 C 0.138 3.862 21 C 0.490 3.510 22 O -0.579 6.579 23 N -0.616 5.616 24 C 0.083 3.917 25 C 0.063 3.937 26 C 0.645 3.355 27 O -0.592 6.592 28 C 0.136 3.864 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.028 0.972 34 H 0.258 0.742 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 -10.361 16.241 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.001 4.001 3 H 0.101 0.899 4 C -0.049 4.049 5 C -0.525 4.525 6 H 0.057 0.943 7 C -0.198 4.198 8 N -0.603 5.603 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.224 1.224 12 H -0.164 1.164 13 N -0.260 5.260 14 C -0.086 4.086 15 C 0.012 3.988 16 N -0.277 5.277 17 C 0.018 3.982 18 N -0.112 5.112 19 N -0.264 5.264 20 C 0.014 3.986 21 C 0.277 3.723 22 O -0.458 6.458 23 N -0.350 5.350 24 C -0.059 4.059 25 C -0.078 4.078 26 C 0.344 3.656 27 O -0.470 6.470 28 C 0.006 3.994 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.174 0.826 40 H 0.160 0.840 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.115 0.885 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.767 -10.842 16.618 22.575 hybrid contribution -0.323 0.256 -0.351 0.542 sum -11.090 -10.586 16.266 22.353 Atomic orbital electron populations 1.22497 0.95832 1.02520 1.03310 1.21579 0.92663 0.97720 0.88161 0.89926 1.19733 0.94485 0.96458 0.94251 1.21319 0.92052 1.32184 1.06929 0.94283 1.25923 0.95357 0.97720 1.00793 1.70084 1.08618 1.48111 1.33497 0.85855 0.79567 0.78602 0.79739 1.19726 1.22439 1.16397 1.62237 1.60386 1.00458 1.02930 1.22593 0.97516 1.00577 0.87945 1.22194 1.02928 0.72797 1.00847 1.46215 1.59871 1.10062 1.11558 1.24652 0.94716 0.86712 0.92132 1.76655 1.22712 1.16594 0.95264 1.48604 1.62244 1.05881 1.09671 1.21618 0.96013 0.84743 0.96180 1.21351 0.90337 0.80953 0.79677 1.90702 1.38102 1.53068 1.63943 1.47881 1.15140 1.24818 1.47171 1.21745 0.85722 1.00733 0.97734 1.22264 0.85531 0.95588 1.04397 1.16609 0.81922 0.82480 0.84574 1.90987 1.56639 1.80081 1.19248 1.20995 0.99611 0.90468 0.88328 0.90959 0.92188 0.91098 0.95750 0.95423 0.93301 0.92013 0.85931 0.87471 0.89799 0.82637 0.83960 0.91998 0.87706 0.93175 0.89095 0.89664 0.89460 0.88485 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.22 8.53 71.98 0.61 -3.61 16 2 C 0.11 3.33 2.27 44.91 0.10 3.43 16 3 H 0.08 2.66 7.98 -2.39 -0.02 2.64 16 4 C -0.01 -0.48 3.33 29.85 0.10 -0.38 16 5 C -0.49 -25.91 9.39 25.60 0.24 -25.66 16 6 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 7 C 0.00 -0.18 5.47 84.66 0.46 0.28 16 8 N -0.96 -59.82 13.96 21.45 0.30 -59.52 16 9 Si 0.94 42.77 27.47 68.60 1.88 44.66 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 12 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 13 N -0.54 -16.92 4.36 -872.05 -3.80 -20.72 16 14 C 0.04 1.01 4.82 86.42 0.42 1.43 16 15 C 0.13 3.67 7.17 86.48 0.62 4.29 16 16 N -0.55 -18.80 3.14 -644.15 -2.02 -20.82 16 17 C 0.30 10.15 7.85 137.73 1.08 11.23 16 18 N -0.29 -10.18 12.51 -49.09 -0.61 -10.79 16 19 N -0.45 -14.97 3.12 -482.11 -1.51 -16.48 16 20 C 0.14 3.25 5.18 85.63 0.44 3.69 16 21 C 0.49 12.89 7.74 87.65 0.68 13.57 16 22 O -0.58 -21.35 16.01 -3.05 -0.05 -21.39 16 23 N -0.62 -10.56 3.27 -871.90 -2.85 -13.41 16 24 C 0.08 1.22 10.48 127.77 1.34 2.56 16 25 C 0.06 0.45 10.60 127.77 1.35 1.80 16 26 C 0.64 24.27 8.67 179.16 1.55 25.82 16 27 O -0.59 -24.54 17.85 -4.71 -0.08 -24.62 16 28 C 0.14 4.23 5.03 85.58 0.43 4.66 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 1.34 6.30 -2.39 -0.02 1.33 16 31 H 0.07 1.35 6.90 -2.39 -0.02 1.33 16 32 H 0.02 0.98 5.35 -2.39 -0.01 0.96 16 33 H 0.03 1.09 7.57 -2.38 -0.02 1.07 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.06 1.31 7.21 -2.39 -0.02 1.30 16 36 H 0.12 2.46 7.89 -2.39 -0.02 2.44 16 37 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.16 2.55 7.79 -2.38 -0.02 2.53 16 40 H 0.14 2.70 7.76 -2.39 -0.02 2.68 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.81 8.07 -2.39 -0.02 0.79 16 43 H 0.05 1.02 7.42 -2.38 -0.02 1.00 16 44 H 0.09 0.45 5.77 -2.39 -0.01 0.44 16 45 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 47 H 0.10 2.52 6.09 -2.39 -0.01 2.51 16 48 H 0.11 3.83 6.52 -2.39 -0.02 3.81 16 Total: -1.00 -85.63 382.73 1.61 -84.02 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.92 Total: 15.95 kcal Atomic # 6 Polarization: 33.68 SS G_CDS: 9.44 Total: 43.12 kcal Atomic # 7 Polarization: -131.24 SS G_CDS: -10.49 Total: -141.74 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.13 Total: -46.02 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.66 kcal Total: -85.63 1.61 -84.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578631820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.255 kcal (2) G-P(sol) polarization free energy of solvation -85.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds