Wall clock time and date at job start Tue Mar 31 2020 19:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46936 * 2 1 4 4 C 1.52996 * 109.47237 * 120.00734 * 2 1 3 5 5 C 1.50707 * 109.46757 * 182.72048 * 4 2 1 6 6 H 1.07991 * 120.00061 * 2.87186 * 5 4 2 7 7 C 1.37881 * 119.99721 * 182.86822 * 5 4 2 8 8 N 1.31507 * 119.99839 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99881 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47192 * 90.00018 * 9 7 5 11 11 H 1.48506 * 109.47292 * 209.99996 * 9 7 5 12 12 H 1.48501 * 109.47522 * 330.00106 * 9 7 5 13 13 N 1.46910 * 109.46837 * 240.00632 * 2 1 3 14 14 C 1.47077 * 110.98455 * 306.98043 * 13 2 1 15 15 C 1.53437 * 109.50844 * 195.91839 * 14 13 2 16 16 N 1.46786 * 108.10992 * 308.83861 * 15 14 13 17 17 C 1.38214 * 123.20494 * 18.84025 * 16 15 14 18 18 N 1.28674 * 108.78572 * 178.08950 * 17 16 15 19 19 N 1.40383 * 108.10572 * 0.64524 * 18 17 16 20 20 C 1.46504 * 126.31147 * 180.31159 * 19 18 17 21 21 C 1.50696 * 109.47009 * 269.99376 * 20 19 18 22 22 O 1.21286 * 119.99904 * 0.02562 * 21 20 19 23 23 N 1.34773 * 120.00536 * 180.02562 * 21 20 19 24 24 C 1.46495 * 120.00582 * 180.02562 * 23 21 20 25 25 C 1.46511 * 119.99469 * 0.02562 * 23 21 20 26 26 C 1.34039 * 128.38230 * 198.20426 * 16 15 14 27 27 O 1.21808 * 126.34762 * 2.12515 * 26 16 15 28 28 C 1.47399 * 110.99846 * 70.91520 * 13 2 1 29 29 H 1.08999 * 109.46658 * 299.99217 * 1 2 3 30 30 H 1.08996 * 109.47547 * 59.99365 * 1 2 3 31 31 H 1.08999 * 109.46772 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47126 * 302.71721 * 4 2 1 33 33 H 1.08994 * 109.47036 * 62.72326 * 4 2 1 34 34 H 0.97005 * 120.00074 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.42950 * 75.92667 * 14 13 2 36 36 H 1.09008 * 109.50420 * 315.94915 * 14 13 2 37 37 H 1.09000 * 109.74661 * 189.17113 * 15 14 13 38 38 H 1.09003 * 109.74736 * 68.50615 * 15 14 13 39 39 H 1.08999 * 109.47416 * 29.99545 * 20 19 18 40 40 H 1.09005 * 109.46941 * 149.99924 * 20 19 18 41 41 H 1.09002 * 109.47281 * 59.99933 * 24 23 21 42 42 H 1.08999 * 109.47229 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.47035 * 300.00160 * 24 23 21 44 44 H 1.08997 * 109.46924 * 89.99874 * 25 23 21 45 45 H 1.09000 * 109.46762 * 209.99588 * 25 23 21 46 46 H 1.08997 * 109.46791 * 329.99781 * 25 23 21 47 47 H 1.09006 * 109.77620 * 64.98592 * 28 13 2 48 48 H 1.08999 * 109.82260 * 304.21130 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5456 -0.6632 1.2832 6 1 4.0825 -0.1223 0.5181 7 6 4.2374 -1.3005 2.2913 8 7 5.5512 -1.2493 2.3214 9 14 3.3086 -2.2354 3.6152 10 1 3.1244 -3.6458 3.1884 11 1 4.0820 -2.1986 4.8824 12 1 1.9808 -1.6051 3.8272 13 7 2.0196 -0.6924 -1.1996 14 6 1.4164 -2.0284 -1.3198 15 6 2.2202 -2.8652 -2.3236 16 7 2.3686 -2.0812 -3.5557 17 6 2.1952 -0.7109 -3.6064 18 7 2.4297 -0.3077 -4.8057 19 7 2.7543 -1.4279 -5.5870 20 6 3.0982 -1.4222 -7.0111 21 6 1.8447 -1.5863 -7.8312 22 8 0.7698 -1.6967 -7.2804 23 7 1.9179 -1.6105 -9.1767 24 6 0.6993 -1.7695 -9.9740 25 6 3.2165 -1.4777 -9.8420 26 6 2.6911 -2.5128 -4.7830 27 8 2.8900 -3.6684 -5.1128 28 6 1.7715 0.1100 -2.4109 29 1 -0.3632 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6375 -0.2366 2.1385 33 1 1.7171 -1.7621 1.2249 34 1 6.0380 -1.6980 3.0304 35 1 0.3882 -1.9319 -1.6683 36 1 1.4254 -2.5206 -0.3472 37 1 1.6891 -3.7924 -2.5390 38 1 3.2033 -3.0916 -1.9107 39 1 3.5776 -0.4769 -7.2653 40 1 3.7814 -2.2447 -7.2231 41 1 0.0166 -0.9465 -9.7623 42 1 0.9551 -1.7653 -11.0335 43 1 0.2193 -2.7144 -9.7195 44 1 3.6555 -2.4655 -9.9823 45 1 3.0805 -0.9995 -10.8120 46 1 3.8794 -0.8695 -9.2267 47 1 2.3547 1.0299 -2.3698 48 1 0.7106 0.3491 -2.4849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578631821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:32 Heat of formation + Delta-G solvation = 41.627194 kcal Electronic energy + Delta-G solvation = -30266.204628 eV Core-core repulsion = 26166.537257 eV Total energy + Delta-G solvation = -4099.667371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.41347 -40.03328 -38.62016 -37.02678 -35.90976 -35.17470 -32.90314 -32.54330 -31.40965 -29.46769 -28.86568 -27.96182 -27.71578 -26.28212 -24.80853 -23.63814 -22.57692 -21.63267 -20.22182 -19.76560 -18.81841 -17.71347 -17.34029 -16.64744 -16.60564 -16.31819 -16.09532 -15.84798 -15.48312 -14.93395 -14.91837 -14.39130 -14.23054 -13.94707 -13.78992 -13.67825 -13.13239 -13.10517 -12.92744 -12.78180 -12.44095 -12.39175 -12.35638 -12.21869 -12.14680 -11.95859 -11.82219 -11.64713 -11.30329 -11.02940 -10.82623 -10.41152 -10.24066 -10.05562 -9.87139 -9.70784 -9.61986 -9.13817 -9.08457 -8.49301 -8.42704 -7.89534 -5.97247 -3.92694 1.71686 2.07329 2.31096 2.60262 2.95814 3.14995 3.30349 3.39600 3.39819 3.91394 4.13810 4.41322 4.47759 4.60001 4.64055 4.82203 4.86039 4.90133 4.91479 5.09832 5.20403 5.23342 5.30205 5.33594 5.35748 5.45174 5.49606 5.53510 5.62423 5.65942 5.78648 5.88736 5.97789 6.05715 6.05829 6.21344 6.24448 6.33742 6.56902 6.62607 6.90964 6.96261 7.08228 7.36329 7.51200 7.78755 7.82397 7.83123 8.20528 8.62882 9.14954 9.64781 11.16467 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.002651 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.173415 B =10558.749138 C =10962.676961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.098 3.902 3 H 0.085 0.915 4 C -0.006 4.006 5 C -0.495 4.495 6 H 0.080 0.920 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.507 5.507 14 C 0.038 3.962 15 C 0.137 3.863 16 N -0.546 5.546 17 C 0.303 3.697 18 N -0.281 5.281 19 N -0.447 5.447 20 C 0.151 3.849 21 C 0.496 3.504 22 O -0.519 6.519 23 N -0.624 5.624 24 C 0.091 3.909 25 C 0.073 3.927 26 C 0.659 3.341 27 O -0.561 6.561 28 C 0.128 3.872 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.041 0.959 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.117 0.883 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 1.913 -21.460 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.009 4.009 3 H 0.103 0.897 4 C -0.043 4.043 5 C -0.533 4.533 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.544 5.544 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.231 5.231 14 C -0.091 4.091 15 C 0.016 3.984 16 N -0.273 5.273 17 C 0.024 3.976 18 N -0.104 5.104 19 N -0.266 5.266 20 C 0.025 3.975 21 C 0.282 3.718 22 O -0.393 6.393 23 N -0.361 5.361 24 C -0.051 4.051 25 C -0.070 4.070 26 C 0.359 3.641 27 O -0.436 6.436 28 C -0.002 4.002 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.135 0.865 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.632 1.655 -21.911 23.261 hybrid contribution -1.142 -1.160 0.875 1.848 sum -8.775 0.495 -21.036 22.798 Atomic orbital electron populations 1.22605 0.98992 1.01772 1.01585 1.21764 0.90261 0.98857 0.90030 0.89664 1.19705 0.98252 0.94895 0.91476 1.21005 0.88870 1.32687 1.10773 0.90210 1.25009 0.94641 0.96402 0.97611 1.69902 1.06186 1.44607 1.33708 0.86936 0.80352 0.80733 0.82092 1.20517 1.21614 1.19289 1.62400 1.58312 1.01570 1.00803 1.22562 0.94827 0.91268 1.00423 1.22041 1.03304 0.93454 0.79600 1.46051 1.62965 1.08257 1.10068 1.24276 0.95556 0.83146 0.94636 1.76643 1.23351 1.09728 1.00655 1.48242 1.66058 1.04336 1.08007 1.21118 0.94836 1.06155 0.75404 1.21128 0.91750 0.76724 0.82216 1.90743 1.30066 1.47681 1.70792 1.47753 1.08718 1.73941 1.05662 1.21614 0.86608 1.02239 0.94664 1.21942 0.84216 1.02183 0.98644 1.16358 0.81235 0.85240 0.81262 1.91038 1.58888 1.15582 1.78080 1.20985 1.00348 0.95317 0.83559 0.91851 0.93441 0.92677 0.95940 0.96864 0.92965 0.94046 0.86955 0.89262 0.88435 0.85845 0.85971 0.92082 0.90540 0.92114 0.92012 0.90517 0.90691 0.86521 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 8.49 37.16 0.32 -2.24 16 2 C 0.10 1.64 2.28 -67.71 -0.15 1.49 16 3 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 4 C -0.01 -0.12 3.45 -27.88 -0.10 -0.22 16 5 C -0.50 -12.98 9.33 -34.44 -0.32 -13.30 16 6 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.87 20.76 27.41 -169.99 -4.66 16.10 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.06 6.63 56.52 0.37 -5.69 16 13 N -0.51 -8.35 4.25 -226.98 -0.96 -9.31 16 14 C 0.04 0.57 4.25 -3.50 -0.01 0.55 16 15 C 0.14 2.18 7.17 -3.66 -0.03 2.15 16 16 N -0.55 -9.49 3.14 -117.47 -0.37 -9.86 16 17 C 0.30 4.92 7.85 -153.73 -1.21 3.71 16 18 N -0.28 -4.60 12.51 33.13 0.41 -4.19 16 19 N -0.45 -7.29 3.12 -66.45 -0.21 -7.50 16 20 C 0.15 1.76 5.42 -5.19 -0.03 1.73 16 21 C 0.50 6.43 7.74 -10.99 -0.09 6.34 16 22 O -0.52 -9.23 16.43 5.55 0.09 -9.14 16 23 N -0.62 -5.55 3.27 -189.52 -0.62 -6.17 16 24 C 0.09 0.69 10.16 59.84 0.61 1.30 16 25 C 0.07 0.32 10.21 59.85 0.61 0.93 16 26 C 0.66 12.37 8.67 -87.21 -0.76 11.61 16 27 O -0.56 -11.74 17.85 5.09 0.09 -11.65 16 28 C 0.13 1.81 5.68 -4.51 -0.03 1.79 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.56 6.66 -51.93 -0.35 0.21 16 31 H 0.05 0.72 6.68 -51.93 -0.35 0.38 16 32 H 0.02 0.48 7.40 -51.93 -0.38 0.10 16 33 H 0.01 0.28 5.49 -51.93 -0.29 -0.01 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.04 0.56 7.14 -51.93 -0.37 0.19 16 36 H 0.11 1.76 5.96 -51.92 -0.31 1.45 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.12 1.02 7.40 -51.93 -0.38 0.63 16 40 H 0.12 1.21 8.08 -51.93 -0.42 0.79 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.33 7.79 -51.93 -0.40 -0.08 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.08 0.19 7.92 -51.93 -0.41 -0.22 16 46 H 0.07 0.24 6.44 -51.93 -0.33 -0.10 16 47 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.07 0.88 6.54 -51.93 -0.34 0.54 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -37.59 383.82 -8.24 -45.83 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.30 Total: -0.99 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: -1.28 Total: 17.52 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.97 Total: -63.46 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.18 Total: -20.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.66 Total: 16.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.59 -8.24 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578631821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.456 kcal (2) G-P(sol) polarization free energy of solvation -37.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds