Wall clock time and date at job start Tue Mar 31 2020 19:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46936 * 2 1 4 4 C 1.52996 * 109.47237 * 120.00734 * 2 1 3 5 5 C 1.50707 * 109.46757 * 182.72048 * 4 2 1 6 6 H 1.07991 * 120.00061 * 2.87186 * 5 4 2 7 7 C 1.37881 * 119.99721 * 182.86822 * 5 4 2 8 8 N 1.31507 * 119.99839 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99881 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47192 * 90.00018 * 9 7 5 11 11 H 1.48506 * 109.47292 * 209.99996 * 9 7 5 12 12 H 1.48501 * 109.47522 * 330.00106 * 9 7 5 13 13 N 1.46910 * 109.46837 * 240.00632 * 2 1 3 14 14 C 1.47077 * 110.98455 * 306.98043 * 13 2 1 15 15 C 1.53437 * 109.50844 * 195.91839 * 14 13 2 16 16 N 1.46786 * 108.10992 * 308.83861 * 15 14 13 17 17 C 1.38214 * 123.20494 * 18.84025 * 16 15 14 18 18 N 1.28674 * 108.78572 * 178.08950 * 17 16 15 19 19 N 1.40383 * 108.10572 * 0.64524 * 18 17 16 20 20 C 1.46504 * 126.31147 * 180.31159 * 19 18 17 21 21 C 1.50696 * 109.47009 * 269.99376 * 20 19 18 22 22 O 1.21286 * 119.99904 * 0.02562 * 21 20 19 23 23 N 1.34773 * 120.00536 * 180.02562 * 21 20 19 24 24 C 1.46495 * 120.00582 * 180.02562 * 23 21 20 25 25 C 1.46511 * 119.99469 * 0.02562 * 23 21 20 26 26 C 1.34039 * 128.38230 * 198.20426 * 16 15 14 27 27 O 1.21808 * 126.34762 * 2.12515 * 26 16 15 28 28 C 1.47399 * 110.99846 * 70.91520 * 13 2 1 29 29 H 1.08999 * 109.46658 * 299.99217 * 1 2 3 30 30 H 1.08996 * 109.47547 * 59.99365 * 1 2 3 31 31 H 1.08999 * 109.46772 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47126 * 302.71721 * 4 2 1 33 33 H 1.08994 * 109.47036 * 62.72326 * 4 2 1 34 34 H 0.97005 * 120.00074 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.42950 * 75.92667 * 14 13 2 36 36 H 1.09008 * 109.50420 * 315.94915 * 14 13 2 37 37 H 1.09000 * 109.74661 * 189.17113 * 15 14 13 38 38 H 1.09003 * 109.74736 * 68.50615 * 15 14 13 39 39 H 1.08999 * 109.47416 * 29.99545 * 20 19 18 40 40 H 1.09005 * 109.46941 * 149.99924 * 20 19 18 41 41 H 1.09002 * 109.47281 * 59.99933 * 24 23 21 42 42 H 1.08999 * 109.47229 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.47035 * 300.00160 * 24 23 21 44 44 H 1.08997 * 109.46924 * 89.99874 * 25 23 21 45 45 H 1.09000 * 109.46762 * 209.99588 * 25 23 21 46 46 H 1.08997 * 109.46791 * 329.99781 * 25 23 21 47 47 H 1.09006 * 109.77620 * 64.98592 * 28 13 2 48 48 H 1.08999 * 109.82260 * 304.21130 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5456 -0.6632 1.2832 6 1 4.0825 -0.1223 0.5181 7 6 4.2374 -1.3005 2.2913 8 7 5.5512 -1.2493 2.3214 9 14 3.3086 -2.2354 3.6152 10 1 3.1244 -3.6458 3.1884 11 1 4.0820 -2.1986 4.8824 12 1 1.9808 -1.6051 3.8272 13 7 2.0196 -0.6924 -1.1996 14 6 1.4164 -2.0284 -1.3198 15 6 2.2202 -2.8652 -2.3236 16 7 2.3686 -2.0812 -3.5557 17 6 2.1952 -0.7109 -3.6064 18 7 2.4297 -0.3077 -4.8057 19 7 2.7543 -1.4279 -5.5870 20 6 3.0982 -1.4222 -7.0111 21 6 1.8447 -1.5863 -7.8312 22 8 0.7698 -1.6967 -7.2804 23 7 1.9179 -1.6105 -9.1767 24 6 0.6993 -1.7695 -9.9740 25 6 3.2165 -1.4777 -9.8420 26 6 2.6911 -2.5128 -4.7830 27 8 2.8900 -3.6684 -5.1128 28 6 1.7715 0.1100 -2.4109 29 1 -0.3632 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6375 -0.2366 2.1385 33 1 1.7171 -1.7621 1.2249 34 1 6.0380 -1.6980 3.0304 35 1 0.3882 -1.9319 -1.6683 36 1 1.4254 -2.5206 -0.3472 37 1 1.6891 -3.7924 -2.5390 38 1 3.2033 -3.0916 -1.9107 39 1 3.5776 -0.4769 -7.2653 40 1 3.7814 -2.2447 -7.2231 41 1 0.0166 -0.9465 -9.7623 42 1 0.9551 -1.7653 -11.0335 43 1 0.2193 -2.7144 -9.7195 44 1 3.6555 -2.4655 -9.9823 45 1 3.0805 -0.9995 -10.8120 46 1 3.8794 -0.8695 -9.2267 47 1 2.3547 1.0299 -2.3698 48 1 0.7106 0.3491 -2.4849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578631821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:31 Heat of formation + Delta-G solvation = 14.035573 kcal Electronic energy + Delta-G solvation = -30267.401090 eV Core-core repulsion = 26166.537257 eV Total energy + Delta-G solvation = -4100.863833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.70563 -40.96745 -39.88638 -38.45086 -36.75912 -36.44063 -34.76201 -33.72562 -32.93486 -30.49348 -30.17310 -29.33387 -28.50174 -27.16617 -25.88183 -24.90485 -24.30205 -22.89719 -21.59496 -20.66546 -20.12064 -18.77841 -18.69071 -18.40393 -17.78231 -17.37497 -17.15763 -16.95120 -16.66577 -16.32856 -16.17815 -15.84263 -15.57480 -15.17770 -14.67663 -14.61081 -14.53336 -14.23506 -13.76968 -13.71048 -13.63671 -13.58247 -13.54600 -13.38238 -13.21527 -13.13430 -13.03889 -12.82497 -12.59776 -12.57720 -12.22102 -11.82837 -11.64896 -11.55727 -11.44415 -11.32601 -11.06983 -10.81032 -10.60101 -9.81010 -9.74023 -9.10040 -8.10545 -6.08906 0.54649 0.82737 1.36935 1.42715 1.43466 1.45036 1.54328 1.85396 2.05939 2.47597 2.68951 3.24821 3.30635 3.36323 3.48840 3.71555 3.95911 4.00441 4.11152 4.22373 4.25615 4.30619 4.31548 4.38261 4.44424 4.46478 4.53582 4.63543 4.67254 4.73200 4.79031 4.81217 4.84550 4.90635 4.97167 5.06234 5.15600 5.27068 5.30757 5.38609 5.44364 5.57734 5.81066 6.09086 6.15198 6.20971 6.49043 6.55050 6.81244 6.95796 7.01234 7.51913 9.06751 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.002651 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.173415 B =10558.749138 C =10962.676961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.483 4.483 6 H 0.039 0.961 7 C -0.004 4.004 8 N -0.961 5.961 9 Si 0.938 3.062 10 H -0.273 1.273 11 H -0.298 1.298 12 H -0.241 1.241 13 N -0.535 5.535 14 C 0.045 3.955 15 C 0.136 3.864 16 N -0.550 5.550 17 C 0.295 3.705 18 N -0.284 5.284 19 N -0.444 5.444 20 C 0.140 3.860 21 C 0.489 3.511 22 O -0.580 6.580 23 N -0.616 5.616 24 C 0.087 3.913 25 C 0.062 3.938 26 C 0.643 3.357 27 O -0.595 6.595 28 C 0.135 3.865 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.051 0.949 42 H 0.116 0.884 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.126 0.874 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 2.599 -22.631 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.003 4.003 3 H 0.099 0.901 4 C -0.044 4.044 5 C -0.521 4.521 6 H 0.057 0.943 7 C -0.199 4.199 8 N -0.604 5.604 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.225 1.225 12 H -0.165 1.165 13 N -0.260 5.260 14 C -0.083 4.083 15 C 0.015 3.985 16 N -0.277 5.277 17 C 0.017 3.983 18 N -0.106 5.106 19 N -0.263 5.263 20 C 0.016 3.984 21 C 0.276 3.724 22 O -0.459 6.459 23 N -0.350 5.350 24 C -0.055 4.055 25 C -0.079 4.079 26 C 0.342 3.658 27 O -0.472 6.472 28 C 0.005 3.995 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.069 0.931 42 H 0.135 0.865 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.108 0.892 47 H 0.144 0.856 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.481 2.385 -23.151 25.130 hybrid contribution -0.475 -1.306 1.053 1.744 sum -9.956 1.079 -22.097 24.260 Atomic orbital electron populations 1.22485 0.95711 1.02660 1.03119 1.21548 0.92714 0.97772 0.88234 0.90096 1.19683 0.94444 0.96171 0.94112 1.21306 0.91762 1.30382 1.08695 0.94306 1.25917 0.95329 0.98059 1.00563 1.70088 1.08333 1.46897 1.35061 0.85851 0.79882 0.79528 0.78439 1.19882 1.22451 1.16451 1.62245 1.59678 1.02444 1.01654 1.22503 0.95610 0.90441 0.99769 1.22084 1.02599 0.94319 0.79536 1.46195 1.62554 1.08908 1.10043 1.24731 0.95525 0.82816 0.95269 1.76612 1.23417 1.09766 1.00854 1.48578 1.64968 1.03470 1.09295 1.21608 0.94876 1.08764 0.73107 1.21354 0.91132 0.76334 0.83608 1.90708 1.31951 1.51011 1.72245 1.47905 1.10823 1.71637 1.04591 1.21753 0.86218 1.00926 0.96621 1.22309 0.82229 1.03517 0.99827 1.16650 0.81668 0.85468 0.82006 1.90989 1.60582 1.16850 1.78782 1.21083 1.02028 0.94673 0.81666 0.91051 0.91241 0.92089 0.95396 0.95901 0.93349 0.91766 0.87466 0.88005 0.90536 0.82242 0.84316 0.93069 0.86516 0.93811 0.90962 0.87833 0.89202 0.85643 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 8.49 71.98 0.61 -3.54 16 2 C 0.10 3.27 2.28 44.91 0.10 3.38 16 3 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 4 C -0.01 -0.27 3.45 29.85 0.10 -0.16 16 5 C -0.48 -25.61 9.33 25.60 0.24 -25.37 16 6 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 7 C 0.00 -0.23 5.47 84.66 0.46 0.23 16 8 N -0.96 -59.84 13.96 21.45 0.30 -59.54 16 9 Si 0.94 42.69 27.41 68.60 1.88 44.57 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.24 -9.84 6.63 99.48 0.66 -9.18 16 13 N -0.54 -16.94 4.25 -872.02 -3.70 -20.64 16 14 C 0.04 1.29 4.25 86.42 0.37 1.66 16 15 C 0.14 4.32 7.17 86.47 0.62 4.94 16 16 N -0.55 -19.15 3.14 -644.16 -2.02 -21.17 16 17 C 0.30 9.36 7.85 137.73 1.08 10.44 16 18 N -0.28 -9.07 12.51 -49.10 -0.61 -9.69 16 19 N -0.44 -14.34 3.12 -482.10 -1.51 -15.85 16 20 C 0.14 3.11 5.42 85.63 0.46 3.58 16 21 C 0.49 12.40 7.74 87.66 0.68 13.08 16 22 O -0.58 -21.03 16.43 -3.05 -0.05 -21.08 16 23 N -0.62 -9.92 3.27 -871.89 -2.85 -12.77 16 24 C 0.09 1.21 10.16 127.77 1.30 2.51 16 25 C 0.06 0.36 10.21 127.77 1.30 1.66 16 26 C 0.64 24.41 8.67 179.16 1.55 25.97 16 27 O -0.59 -25.47 17.85 -4.69 -0.08 -25.55 16 28 C 0.14 3.58 5.68 85.58 0.49 4.07 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.32 6.66 -2.39 -0.02 1.30 16 31 H 0.06 1.35 6.68 -2.39 -0.02 1.33 16 32 H 0.03 1.11 7.40 -2.39 -0.02 1.09 16 33 H 0.02 0.89 5.49 -2.39 -0.01 0.88 16 34 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 35 H 0.06 1.57 7.14 -2.39 -0.02 1.55 16 36 H 0.11 3.18 5.96 -2.38 -0.01 3.17 16 37 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.16 2.25 7.40 -2.39 -0.02 2.23 16 40 H 0.14 2.57 8.08 -2.38 -0.02 2.55 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.12 0.64 7.79 -2.39 -0.02 0.63 16 43 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.10 0.10 7.92 -2.39 -0.02 0.08 16 46 H 0.09 0.27 6.44 -2.39 -0.02 0.25 16 47 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16 48 H 0.10 2.10 6.54 -2.39 -0.02 2.09 16 Total: -1.00 -86.08 383.82 1.64 -84.43 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.92 Total: 14.86 kcal Atomic # 6 Polarization: 33.06 SS G_CDS: 9.37 Total: 42.43 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -10.40 Total: -139.66 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.13 Total: -46.64 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.57 kcal Total: -86.08 1.64 -84.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578631821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.470 kcal (2) G-P(sol) polarization free energy of solvation -86.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds