Wall clock time and date at job start Tue Mar 31 2020 20:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46948 * 2 1 4 4 C 1.50697 * 109.47162 * 239.99478 * 2 1 3 5 5 O 1.21280 * 120.00250 * 244.89900 * 4 2 1 6 6 N 1.34784 * 119.99626 * 64.90013 * 4 2 1 7 7 C 1.46502 * 119.99932 * 5.41227 * 6 4 2 8 8 C 1.46497 * 119.99750 * 185.40794 * 6 4 2 9 9 C 1.50700 * 109.46741 * 90.00360 * 8 6 4 10 10 H 1.07999 * 120.00443 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99928 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00142 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99701 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47045 * 90.00476 * 13 11 9 15 15 H 1.48503 * 109.46873 * 210.00052 * 13 11 9 16 16 H 1.48499 * 109.47494 * 329.99931 * 13 11 9 17 17 N 1.46903 * 109.47107 * 119.99928 * 2 1 3 18 18 C 1.46851 * 110.99875 * 295.00343 * 17 2 1 19 19 C 1.53036 * 109.52468 * 185.84080 * 18 17 2 20 20 C 1.53122 * 109.27718 * 300.82087 * 19 18 17 21 21 N 1.46497 * 109.52309 * 177.56194 * 20 19 18 22 22 C 1.36604 * 127.11611 * 300.01860 * 21 20 19 23 23 N 1.30333 * 107.27871 * 179.97438 * 22 21 20 24 24 N 1.28533 * 109.99762 * 0.02562 * 23 22 21 25 25 C 1.31033 * 109.85565 * 359.97438 * 24 23 22 26 26 O 1.35539 * 126.44529 * 179.97438 * 25 24 23 27 27 C 1.53111 * 109.16300 * 57.65032 * 20 19 18 28 28 C 1.46846 * 111.00021 * 59.20644 * 17 2 1 29 29 H 1.09005 * 109.46926 * 310.62188 * 1 2 3 30 30 H 1.08996 * 109.47245 * 70.62373 * 1 2 3 31 31 H 1.08995 * 109.47015 * 190.62632 * 1 2 3 32 32 H 1.08995 * 109.47037 * 96.09313 * 7 6 4 33 33 H 1.09001 * 109.46650 * 216.09117 * 7 6 4 34 34 H 1.08999 * 109.47087 * 336.08953 * 7 6 4 35 35 H 1.09002 * 109.46932 * 210.00213 * 8 6 4 36 36 H 1.09001 * 109.47315 * 329.99931 * 8 6 4 37 37 H 0.97004 * 119.99972 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.46668 * 65.82146 * 18 17 2 39 39 H 1.09010 * 109.45785 * 305.85059 * 18 17 2 40 40 H 1.08998 * 109.50646 * 180.87641 * 19 18 17 41 41 H 1.09005 * 109.53548 * 60.77304 * 19 18 17 42 42 H 1.09005 * 109.51562 * 297.68194 * 20 19 18 43 43 H 1.07993 * 126.36414 * 359.97438 * 22 21 20 44 44 H 0.96696 * 114.00552 * 90.02540 * 26 25 24 45 45 H 1.08997 * 109.50309 * 62.28972 * 27 20 19 46 46 H 1.09001 * 109.50650 * 182.40762 * 27 20 19 47 47 H 1.08994 * 109.46417 * 294.17653 * 28 17 2 48 48 H 1.08995 * 109.45997 * 54.15067 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6546 -1.7458 -1.1213 6 7 1.7901 -0.1953 -2.4521 7 6 1.1434 1.1130 -2.5803 8 6 2.1736 -0.9437 -3.6517 9 6 1.0319 -1.8309 -4.0766 10 1 0.1128 -1.8370 -3.5095 11 6 1.1611 -2.6356 -5.1887 12 7 0.1646 -3.4095 -5.5598 13 14 2.7511 -2.6255 -6.1692 14 1 3.6747 -3.6533 -5.6251 15 1 2.4566 -2.9285 -7.5928 16 1 3.3859 -1.2868 -6.0691 17 7 2.0197 -0.6925 1.1995 18 6 1.6488 0.0389 2.4177 19 6 2.2964 -0.6293 3.6326 20 6 1.8222 -2.0824 3.7230 21 7 2.4838 -2.7441 4.8502 22 6 3.8264 -2.9201 5.0302 23 7 3.9861 -3.5530 6.1583 24 7 2.8427 -3.7865 6.6970 25 6 1.8871 -3.3113 5.9366 26 8 0.5558 -3.3731 6.1835 27 6 2.1776 -2.8088 2.4229 28 6 1.5334 -2.0774 1.2430 29 1 -0.3633 0.6691 0.7801 30 1 -0.3633 0.3409 -0.9694 31 1 -0.3633 -1.0100 0.1895 32 1 1.9039 1.8828 -2.7111 33 1 0.4799 1.1070 -3.4451 34 1 0.5654 1.3223 -1.6803 35 1 2.4100 -0.2459 -4.4551 36 1 3.0483 -1.5564 -3.4336 37 1 0.2554 -3.9753 -6.3424 38 1 0.5649 0.0280 2.5320 39 1 1.9956 1.0696 2.3422 40 1 2.0083 -0.0955 4.5382 41 1 3.3810 -0.6065 3.5261 42 1 0.7424 -2.1046 3.8703 43 1 4.6101 -2.5951 4.3619 44 1 0.2129 -2.6191 6.6823 45 1 3.2602 -2.8203 2.2967 46 1 1.8047 -3.8322 2.4641 47 1 0.4501 -2.0784 1.3629 48 1 1.7964 -2.5839 0.3144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579793723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:57 Heat of formation + Delta-G solvation = 41.771707 kcal Electronic energy + Delta-G solvation = -30349.339400 eV Core-core repulsion = 26249.678296 eV Total energy + Delta-G solvation = -4099.661104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.30168 -40.37078 -38.56229 -37.97362 -35.84952 -35.09302 -33.00856 -32.34874 -31.20231 -30.08085 -29.73016 -28.16627 -26.37282 -25.31738 -23.95708 -23.58687 -22.79150 -22.38817 -21.51977 -19.70811 -19.23140 -18.59177 -17.36917 -17.06018 -16.75788 -16.33122 -16.19577 -15.69193 -15.13385 -14.97255 -14.86586 -14.74839 -14.55006 -14.18660 -13.94583 -13.68322 -13.24597 -13.04283 -12.78171 -12.56868 -12.55411 -12.40947 -12.26861 -12.07840 -11.86729 -11.72738 -11.49658 -11.42368 -11.27616 -11.22695 -10.86399 -10.84727 -10.58036 -10.48036 -10.24347 -10.17470 -9.62138 -9.45442 -8.97963 -8.66286 -8.33625 -7.78368 -6.16602 -4.16130 1.34079 1.84250 2.52408 3.18136 3.24045 3.29906 3.32245 3.39191 3.42348 3.94789 4.02584 4.27094 4.33171 4.33805 4.51662 4.71003 4.82316 4.90442 4.96115 4.98335 5.02313 5.11910 5.17431 5.22079 5.23833 5.35965 5.40900 5.43215 5.47430 5.56203 5.62463 5.66968 5.74301 5.76256 5.93668 6.03093 6.16160 6.20421 6.28105 6.59580 6.81687 6.90831 6.99171 7.00230 7.24698 7.52758 8.14486 8.38238 8.40142 8.82699 8.88421 9.43731 10.96517 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.002636 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.369635 B =10617.639117 C =11220.053732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.066 3.934 3 H 0.103 0.897 4 C 0.516 3.484 5 O -0.526 6.526 6 N -0.595 5.595 7 C 0.068 3.932 8 C 0.216 3.784 9 C -0.531 4.531 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.514 5.514 18 C 0.057 3.943 19 C -0.121 4.121 20 C 0.133 3.867 21 N -0.476 5.476 22 C 0.172 3.828 23 N -0.286 5.286 24 N -0.289 5.289 25 C 0.343 3.657 26 O -0.437 6.437 27 C -0.118 4.118 28 C 0.038 3.962 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.224 0.776 44 H 0.404 0.596 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.034 0.966 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 11.838 18.347 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.046 4.046 3 H 0.120 0.880 4 C 0.302 3.698 5 O -0.403 6.403 6 N -0.327 5.327 7 C -0.075 4.075 8 C 0.095 3.905 9 C -0.570 4.570 10 H 0.091 0.909 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.190 1.190 17 N -0.239 5.239 18 C -0.071 4.071 19 C -0.159 4.159 20 C 0.030 3.970 21 N -0.178 5.178 22 C -0.115 4.115 23 N -0.127 5.127 24 N -0.140 5.140 25 C 0.039 3.961 26 O -0.236 6.236 27 C -0.157 4.157 28 C -0.089 4.089 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.240 0.760 44 H 0.261 0.739 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.052 0.948 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.840 9.923 19.094 21.597 hybrid contribution -1.159 1.128 -1.527 2.225 sum 0.681 11.052 17.566 20.765 Atomic orbital electron populations 1.22630 0.95429 1.03367 1.03820 1.21617 0.94194 0.98760 0.89987 0.87951 1.20028 0.80326 0.85453 0.83976 1.90551 1.40312 1.23862 1.85567 1.47774 1.59009 1.19301 1.06634 1.21977 0.97638 0.84656 1.03248 1.19671 0.97271 0.91920 0.81639 1.21297 1.00655 1.23106 1.11903 0.90852 1.24854 0.96392 0.94690 0.97012 1.69890 1.31475 1.26004 1.26121 0.86847 0.84128 0.79210 0.79486 1.19846 1.21064 1.19047 1.61878 1.59522 1.02162 1.00298 1.22049 0.97969 0.98087 0.89039 1.21957 1.02862 0.92768 0.98352 1.21812 0.97785 0.92985 0.84442 1.47226 1.08202 1.43096 1.19296 1.26355 0.84420 1.01929 0.98782 1.74246 1.16495 1.15158 1.06807 1.74595 0.94466 1.21464 1.23492 1.22175 0.86702 0.99889 0.87351 1.84927 1.13660 1.48332 1.76686 1.21948 1.03335 0.99016 0.91396 1.22569 0.96280 0.88855 1.01201 0.91907 0.89832 0.91334 0.93484 0.90682 0.90976 0.95240 0.94347 0.92488 0.94215 0.89783 0.90867 0.89680 0.87942 0.75995 0.73911 0.89743 0.90617 0.94758 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 7.94 37.16 0.30 -1.85 16 2 C 0.07 0.83 1.94 -68.86 -0.13 0.70 16 3 H 0.10 1.06 7.68 -51.93 -0.40 0.66 16 4 C 0.52 9.36 6.76 -10.98 -0.07 9.29 16 5 O -0.53 -11.55 13.24 5.56 0.07 -11.48 16 6 N -0.60 -11.19 2.85 -182.95 -0.52 -11.71 16 7 C 0.07 0.93 9.71 59.85 0.58 1.51 16 8 C 0.22 5.00 4.30 -5.19 -0.02 4.97 16 9 C -0.53 -14.53 9.94 -34.44 -0.34 -14.88 16 10 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 13 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 17 N -0.51 -5.93 4.47 -228.08 -1.02 -6.95 16 18 C 0.06 0.44 5.04 -3.83 -0.02 0.43 16 19 C -0.12 -0.82 5.47 -26.65 -0.15 -0.97 16 20 C 0.13 1.09 2.96 -67.81 -0.20 0.88 16 21 N -0.48 -4.54 2.65 -112.49 -0.30 -4.83 16 22 C 0.17 1.72 11.81 -89.07 -1.05 0.67 16 23 N -0.29 -3.79 12.18 29.87 0.36 -3.43 16 24 N -0.29 -4.01 12.22 29.65 0.36 -3.65 16 25 C 0.34 3.82 9.22 -88.76 -0.82 3.00 16 26 O -0.44 -3.76 13.43 -18.31 -0.25 -4.00 16 27 C -0.12 -1.25 5.47 -26.65 -0.15 -1.40 16 28 C 0.04 0.49 4.51 -3.83 -0.02 0.47 16 29 H 0.06 0.52 7.21 -51.93 -0.37 0.14 16 30 H 0.08 0.99 5.39 -51.93 -0.28 0.71 16 31 H 0.07 0.86 5.99 -51.93 -0.31 0.55 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 34 H 0.07 0.77 4.12 -51.93 -0.21 0.56 16 35 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 36 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.04 0.29 6.98 -51.93 -0.36 -0.08 16 39 H 0.08 0.56 8.08 -51.92 -0.42 0.14 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 42 H 0.10 0.79 7.91 -51.93 -0.41 0.37 16 43 H 0.22 1.48 8.06 -52.49 -0.42 1.05 16 44 H 0.40 1.22 9.06 45.56 0.41 1.64 16 45 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.03 0.41 6.39 -51.93 -0.33 0.08 16 48 H 0.13 2.20 5.14 -51.93 -0.27 1.93 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -36.14 374.44 -7.94 -44.08 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.20 Total: 1.31 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.19 Total: 4.80 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.34 Total: -56.66 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.17 Total: -15.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.14 -7.94 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579793723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.851 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds