Wall clock time and date at job start Tue Mar 31 2020 20:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46948 * 2 1 4 4 C 1.50697 * 109.47162 * 239.99478 * 2 1 3 5 5 O 1.21280 * 120.00250 * 244.89900 * 4 2 1 6 6 N 1.34784 * 119.99626 * 64.90013 * 4 2 1 7 7 C 1.46502 * 119.99932 * 5.41227 * 6 4 2 8 8 C 1.46497 * 119.99750 * 185.40794 * 6 4 2 9 9 C 1.50700 * 109.46741 * 90.00360 * 8 6 4 10 10 H 1.07999 * 120.00443 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99928 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00142 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99701 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47045 * 90.00476 * 13 11 9 15 15 H 1.48503 * 109.46873 * 210.00052 * 13 11 9 16 16 H 1.48499 * 109.47494 * 329.99931 * 13 11 9 17 17 N 1.46903 * 109.47107 * 119.99928 * 2 1 3 18 18 C 1.46851 * 110.99875 * 295.00343 * 17 2 1 19 19 C 1.53036 * 109.52468 * 185.84080 * 18 17 2 20 20 C 1.53122 * 109.27718 * 300.82087 * 19 18 17 21 21 N 1.46497 * 109.52309 * 177.56194 * 20 19 18 22 22 C 1.36604 * 127.11611 * 300.01860 * 21 20 19 23 23 N 1.30333 * 107.27871 * 179.97438 * 22 21 20 24 24 N 1.28533 * 109.99762 * 0.02562 * 23 22 21 25 25 C 1.31033 * 109.85565 * 359.97438 * 24 23 22 26 26 O 1.35539 * 126.44529 * 179.97438 * 25 24 23 27 27 C 1.53111 * 109.16300 * 57.65032 * 20 19 18 28 28 C 1.46846 * 111.00021 * 59.20644 * 17 2 1 29 29 H 1.09005 * 109.46926 * 310.62188 * 1 2 3 30 30 H 1.08996 * 109.47245 * 70.62373 * 1 2 3 31 31 H 1.08995 * 109.47015 * 190.62632 * 1 2 3 32 32 H 1.08995 * 109.47037 * 96.09313 * 7 6 4 33 33 H 1.09001 * 109.46650 * 216.09117 * 7 6 4 34 34 H 1.08999 * 109.47087 * 336.08953 * 7 6 4 35 35 H 1.09002 * 109.46932 * 210.00213 * 8 6 4 36 36 H 1.09001 * 109.47315 * 329.99931 * 8 6 4 37 37 H 0.97004 * 119.99972 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.46668 * 65.82146 * 18 17 2 39 39 H 1.09010 * 109.45785 * 305.85059 * 18 17 2 40 40 H 1.08998 * 109.50646 * 180.87641 * 19 18 17 41 41 H 1.09005 * 109.53548 * 60.77304 * 19 18 17 42 42 H 1.09005 * 109.51562 * 297.68194 * 20 19 18 43 43 H 1.07993 * 126.36414 * 359.97438 * 22 21 20 44 44 H 0.96696 * 114.00552 * 90.02540 * 26 25 24 45 45 H 1.08997 * 109.50309 * 62.28972 * 27 20 19 46 46 H 1.09001 * 109.50650 * 182.40762 * 27 20 19 47 47 H 1.08994 * 109.46417 * 294.17653 * 28 17 2 48 48 H 1.08995 * 109.45997 * 54.15067 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6546 -1.7458 -1.1213 6 7 1.7901 -0.1953 -2.4521 7 6 1.1434 1.1130 -2.5803 8 6 2.1736 -0.9437 -3.6517 9 6 1.0319 -1.8309 -4.0766 10 1 0.1128 -1.8370 -3.5095 11 6 1.1611 -2.6356 -5.1887 12 7 0.1646 -3.4095 -5.5598 13 14 2.7511 -2.6255 -6.1692 14 1 3.6747 -3.6533 -5.6251 15 1 2.4566 -2.9285 -7.5928 16 1 3.3859 -1.2868 -6.0691 17 7 2.0197 -0.6925 1.1995 18 6 1.6488 0.0389 2.4177 19 6 2.2964 -0.6293 3.6326 20 6 1.8222 -2.0824 3.7230 21 7 2.4838 -2.7441 4.8502 22 6 3.8264 -2.9201 5.0302 23 7 3.9861 -3.5530 6.1583 24 7 2.8427 -3.7865 6.6970 25 6 1.8871 -3.3113 5.9366 26 8 0.5558 -3.3731 6.1835 27 6 2.1776 -2.8088 2.4229 28 6 1.5334 -2.0774 1.2430 29 1 -0.3633 0.6691 0.7801 30 1 -0.3633 0.3409 -0.9694 31 1 -0.3633 -1.0100 0.1895 32 1 1.9039 1.8828 -2.7111 33 1 0.4799 1.1070 -3.4451 34 1 0.5654 1.3223 -1.6803 35 1 2.4100 -0.2459 -4.4551 36 1 3.0483 -1.5564 -3.4336 37 1 0.2554 -3.9753 -6.3424 38 1 0.5649 0.0280 2.5320 39 1 1.9956 1.0696 2.3422 40 1 2.0083 -0.0955 4.5382 41 1 3.3810 -0.6065 3.5261 42 1 0.7424 -2.1046 3.8703 43 1 4.6101 -2.5951 4.3619 44 1 0.2129 -2.6191 6.6823 45 1 3.2602 -2.8203 2.2967 46 1 1.8047 -3.8322 2.4641 47 1 0.4501 -2.0784 1.3629 48 1 1.7964 -2.5839 0.3144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579793723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:56 Heat of formation + Delta-G solvation = 12.126519 kcal Electronic energy + Delta-G solvation = -30350.624912 eV Core-core repulsion = 26249.678296 eV Total energy + Delta-G solvation = -4100.946616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.11451 -41.47627 -39.63844 -38.66715 -36.83413 -36.54411 -34.77746 -33.56310 -31.96146 -30.98358 -30.91501 -29.61732 -27.58720 -26.28229 -25.22076 -24.37975 -23.88751 -23.34256 -22.61898 -20.53386 -19.95315 -19.89403 -19.14167 -18.12886 -17.91213 -17.40228 -17.20165 -16.54389 -16.42314 -16.17277 -15.94989 -15.73540 -15.59475 -15.33553 -14.82658 -14.78061 -14.49503 -14.18686 -14.11470 -13.69024 -13.51264 -13.42042 -13.38950 -13.18291 -13.12798 -12.92066 -12.73948 -12.46763 -12.35504 -12.19966 -12.11687 -11.98424 -11.95144 -11.74539 -11.72822 -11.28952 -11.03273 -10.83992 -10.30910 -10.28515 -9.35028 -9.21260 -8.35110 -6.39585 0.60241 1.09133 1.32260 1.35982 1.44046 1.69048 1.82600 2.24452 2.30021 2.72783 2.92682 3.00063 3.32857 3.57806 3.63307 3.67574 3.83015 4.03572 4.06654 4.14374 4.20569 4.20973 4.31223 4.37371 4.43705 4.55289 4.64188 4.65436 4.69493 4.74862 4.80378 4.83570 4.87541 4.95170 4.98309 4.99501 5.01355 5.11567 5.20880 5.29028 5.45935 5.62355 5.65429 5.92540 6.16387 6.24440 6.44089 6.62028 6.76743 7.22149 7.48618 7.56713 8.81469 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.002636 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.369635 B =10617.639117 C =11220.053732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.079 3.921 3 H 0.138 0.862 4 C 0.502 3.498 5 O -0.575 6.575 6 N -0.607 5.607 7 C 0.063 3.937 8 C 0.224 3.776 9 C -0.532 4.532 10 H 0.031 0.969 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.945 3.055 14 H -0.278 1.278 15 H -0.277 1.277 16 H -0.238 1.238 17 N -0.525 5.525 18 C 0.057 3.943 19 C -0.113 4.113 20 C 0.142 3.858 21 N -0.472 5.472 22 C 0.182 3.818 23 N -0.323 5.323 24 N -0.332 5.332 25 C 0.351 3.649 26 O -0.441 6.441 27 C -0.112 4.112 28 C 0.047 3.953 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.252 0.748 44 H 0.428 0.572 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.038 0.962 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 15.323 19.556 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.033 4.033 3 H 0.156 0.844 4 C 0.290 3.710 5 O -0.455 6.455 6 N -0.338 5.338 7 C -0.078 4.078 8 C 0.101 3.899 9 C -0.570 4.570 10 H 0.049 0.951 11 C -0.186 4.186 12 N -0.586 5.586 13 Si 0.768 3.232 14 H -0.204 1.204 15 H -0.202 1.202 16 H -0.161 1.161 17 N -0.250 5.250 18 C -0.071 4.071 19 C -0.151 4.151 20 C 0.040 3.960 21 N -0.174 5.174 22 C -0.106 4.106 23 N -0.164 5.164 24 N -0.183 5.183 25 C 0.045 3.955 26 O -0.244 6.244 27 C -0.151 4.151 28 C -0.082 4.082 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.268 0.732 44 H 0.290 0.710 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.244 13.480 20.346 24.509 hybrid contribution -1.410 0.017 -1.868 2.341 sum 0.834 13.498 18.477 22.898 Atomic orbital electron populations 1.22603 0.94207 1.03051 1.04812 1.21594 0.94829 0.99346 0.87532 0.84411 1.21207 0.79326 0.85105 0.85344 1.90545 1.42390 1.26099 1.86475 1.47885 1.59511 1.20749 1.05696 1.22266 0.98441 0.82689 1.04444 1.19286 0.94653 0.91859 0.84109 1.21549 1.00461 1.23817 1.11208 0.95060 1.25812 1.00112 0.94270 0.98436 1.70041 1.34014 1.27388 1.27121 0.85759 0.79333 0.80351 0.77771 1.20387 1.20230 1.16118 1.61839 1.59954 1.01634 1.01537 1.22218 0.99097 0.98683 0.87073 1.21945 1.02776 0.91371 0.99037 1.21794 0.98354 0.93473 0.82399 1.47256 1.07989 1.42971 1.19141 1.26910 0.85196 1.00409 0.98051 1.74159 1.16864 1.16896 1.08452 1.74493 0.95309 1.23283 1.25220 1.22202 0.87220 0.98818 0.87266 1.84889 1.12244 1.50105 1.77200 1.21807 1.02569 0.98406 0.92301 1.22248 0.96573 0.89874 0.99483 0.87672 0.90704 0.93591 0.90517 0.92057 0.87660 0.93549 0.96399 0.92348 0.92730 0.87348 0.88342 0.89766 0.86784 0.73232 0.71016 0.90469 0.92118 0.94390 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.66 7.94 71.98 0.57 -3.09 16 2 C 0.08 1.76 1.94 44.17 0.09 1.85 16 3 H 0.14 2.17 7.68 -2.39 -0.02 2.15 16 4 C 0.50 18.15 6.76 87.66 0.59 18.74 16 5 O -0.58 -26.32 13.24 -3.03 -0.04 -26.36 16 6 N -0.61 -22.54 2.85 -851.13 -2.43 -24.97 16 7 C 0.06 1.58 9.71 127.77 1.24 2.82 16 8 C 0.22 10.45 4.30 85.63 0.37 10.82 16 9 C -0.53 -30.20 9.94 25.60 0.25 -29.94 16 10 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 11 C 0.01 0.68 5.47 84.66 0.46 1.14 16 12 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 13 Si 0.94 43.78 27.47 68.60 1.88 45.66 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 17 N -0.53 -10.91 4.47 -875.50 -3.91 -14.82 16 18 C 0.06 0.62 5.04 86.32 0.43 1.05 16 19 C -0.11 -1.08 5.47 30.65 0.17 -0.91 16 20 C 0.14 1.97 2.96 45.07 0.13 2.11 16 21 N -0.47 -8.12 2.65 -620.61 -1.65 -9.76 16 22 C 0.18 3.40 11.81 179.81 2.12 5.52 16 23 N -0.32 -8.47 12.18 -59.40 -0.72 -9.19 16 24 N -0.33 -9.11 12.22 -173.67 -2.12 -11.24 16 25 C 0.35 7.33 9.22 179.70 1.66 8.99 16 26 O -0.44 -6.74 13.43 -88.43 -1.19 -7.93 16 27 C -0.11 -2.33 5.47 30.65 0.17 -2.16 16 28 C 0.05 1.18 4.51 86.33 0.39 1.57 16 29 H 0.10 1.19 7.21 -2.38 -0.02 1.17 16 30 H 0.07 1.60 5.39 -2.39 -0.01 1.59 16 31 H 0.05 1.11 5.99 -2.39 -0.01 1.10 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 34 H 0.11 1.89 4.12 -2.39 -0.01 1.88 16 35 H 0.05 2.01 7.13 -2.39 -0.02 1.99 16 36 H 0.02 0.91 6.78 -2.39 -0.02 0.89 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.05 0.48 6.98 -2.39 -0.02 0.47 16 39 H 0.11 0.76 8.08 -2.38 -0.02 0.74 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 0.88 7.92 -2.38 -0.02 0.87 16 42 H 0.11 1.38 7.91 -2.38 -0.02 1.37 16 43 H 0.25 2.84 8.06 -2.91 -0.02 2.81 16 44 H 0.43 1.47 9.06 -74.06 -0.67 0.80 16 45 H 0.08 1.70 7.92 -2.39 -0.02 1.68 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.04 0.91 6.39 -2.39 -0.02 0.89 16 48 H 0.08 2.80 5.14 -2.39 -0.01 2.78 16 Total: -1.00 -85.94 374.44 -0.96 -86.89 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.27 Total: 11.71 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 8.65 Total: 18.50 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -10.53 Total: -128.47 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.23 Total: -34.29 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -85.94 -0.96 -86.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579793723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.017 kcal (2) G-P(sol) polarization free energy of solvation -85.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds