Wall clock time and date at job start Tue Mar 31 2020 20:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47724 * 2 1 4 4 C 1.50701 * 109.47159 * 120.00052 * 2 1 3 5 5 O 1.21286 * 119.99939 * 93.91773 * 4 2 1 6 6 N 1.34773 * 119.99902 * 273.91483 * 4 2 1 7 7 C 1.46499 * 120.00163 * 0.02562 * 6 4 2 8 8 C 1.46509 * 119.99605 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.46810 * 90.00597 * 8 6 4 10 10 H 1.08007 * 120.00175 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99839 * 179.97438 * 9 8 6 12 12 N 1.31521 * 120.00022 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00132 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.46754 * 90.00320 * 13 11 9 15 15 H 1.48497 * 109.47097 * 209.99962 * 13 11 9 16 16 H 1.48498 * 109.47003 * 330.00182 * 13 11 9 17 17 N 1.46899 * 109.47163 * 239.99971 * 2 1 3 18 18 C 1.46840 * 111.00528 * 186.01321 * 17 2 1 19 19 C 1.53032 * 109.52890 * 185.83796 * 18 17 2 20 20 C 1.53120 * 109.28050 * 300.82449 * 19 18 17 21 21 N 1.46498 * 109.52590 * 177.55663 * 20 19 18 22 22 C 1.36605 * 127.11696 * 299.80817 * 21 20 19 23 23 N 1.30337 * 107.27946 * 179.89093 * 22 21 20 24 24 N 1.28531 * 109.98905 * 0.38597 * 23 22 21 25 25 C 1.31029 * 109.86516 * 359.75141 * 24 23 22 26 26 O 1.35537 * 126.44738 * 179.97438 * 25 24 23 27 27 C 1.53117 * 109.21276 * 57.61962 * 20 19 18 28 28 C 1.46841 * 111.00050 * 310.22834 * 17 2 1 29 29 H 1.08990 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46959 * 300.00315 * 1 2 3 31 31 H 1.08999 * 109.47194 * 59.99633 * 1 2 3 32 32 H 1.09003 * 109.46981 * 89.99688 * 7 6 4 33 33 H 1.08999 * 109.47040 * 209.99618 * 7 6 4 34 34 H 1.08996 * 109.47226 * 329.99646 * 7 6 4 35 35 H 1.08999 * 109.46828 * 209.99934 * 8 6 4 36 36 H 1.08994 * 109.47318 * 330.00201 * 8 6 4 37 37 H 0.96999 * 119.99899 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.46176 * 65.81917 * 18 17 2 39 39 H 1.09007 * 109.46563 * 305.86035 * 18 17 2 40 40 H 1.08996 * 109.50888 * 180.87683 * 19 18 17 41 41 H 1.09010 * 109.49834 * 60.76407 * 19 18 17 42 42 H 1.08994 * 109.52080 * 297.68128 * 20 19 18 43 43 H 1.07997 * 126.36039 * 0.04869 * 22 21 20 44 44 H 0.96693 * 114.00296 * 270.00268 * 26 25 24 45 45 H 1.09002 * 109.50585 * 62.31650 * 27 20 19 46 46 H 1.08997 * 109.50449 * 182.44147 * 27 20 19 47 47 H 1.09007 * 109.46484 * 294.17448 * 28 17 2 48 48 H 1.08999 * 109.46505 * 54.14057 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3021 -1.8919 1.1809 6 7 2.1818 -0.0329 2.3859 7 6 1.8554 1.3940 2.4459 8 6 2.6696 -0.7238 3.5822 9 6 4.1735 -0.6407 3.6320 10 1 4.7121 -0.1253 2.8505 11 6 4.8619 -1.2227 4.6752 12 7 6.1744 -1.1507 4.7185 13 14 3.9303 -2.1136 6.0273 14 1 3.7730 -3.5438 5.6603 15 1 4.6869 -2.0097 7.3009 16 1 2.5907 -1.4953 6.1955 17 7 2.0196 -0.6925 -1.1994 18 6 3.4804 -0.8378 -1.1638 19 6 3.9681 -1.4295 -2.4882 20 6 3.3061 -2.7927 -2.7071 21 7 3.7241 -3.3380 -4.0010 22 6 3.5273 -2.7809 -5.2326 23 7 4.0546 -3.5868 -6.1108 24 7 4.5596 -4.6106 -5.5201 25 6 4.3847 -4.5089 -4.2255 26 8 4.7848 -5.4006 -3.2865 27 6 1.7845 -2.6224 -2.6912 28 6 1.3603 -1.9945 -1.3614 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.8080 1.5158 2.7218 33 1 2.4861 1.8800 3.1902 34 1 2.0293 1.8478 1.4702 35 1 2.2501 -0.2518 4.4707 36 1 2.3644 -1.7695 3.5478 37 1 6.6587 -1.5605 5.4522 38 1 3.7596 -1.5009 -0.3451 39 1 3.9390 0.1394 -1.0118 40 1 5.0507 -1.5517 -2.4556 41 1 3.7014 -0.7599 -3.3060 42 1 3.6046 -3.4746 -1.9109 43 1 3.0296 -1.8451 -5.4400 44 1 4.1281 -6.0812 -3.0853 45 1 1.4824 -1.9721 -3.5122 46 1 1.3081 -3.5963 -2.8032 47 1 1.6493 -2.6525 -0.5417 48 1 0.2790 -1.8577 -1.3529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579793724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:59 Heat of formation + Delta-G solvation = 32.464174 kcal Electronic energy + Delta-G solvation = -30730.802373 eV Core-core repulsion = 26630.737663 eV Total energy + Delta-G solvation = -4100.064709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.20411 -40.47594 -38.33101 -37.81247 -35.73648 -34.99468 -33.00245 -32.40582 -31.20542 -29.98757 -29.65239 -28.46842 -26.21264 -25.32492 -24.04959 -23.05384 -22.74422 -22.28310 -21.31006 -19.94230 -19.08884 -18.54184 -17.33576 -17.07447 -16.83610 -16.52134 -16.04515 -15.61184 -15.10788 -15.02417 -14.92955 -14.57172 -14.23167 -14.03399 -13.94372 -13.59995 -13.33202 -12.88835 -12.60968 -12.54493 -12.43376 -12.30426 -12.12639 -12.06271 -11.89271 -11.67292 -11.57318 -11.29521 -11.19051 -11.07552 -10.99273 -10.81574 -10.63174 -10.38208 -10.24352 -10.08870 -9.82417 -9.62633 -9.35721 -8.69956 -8.02570 -7.87101 -6.19606 -4.19414 1.44227 1.96514 2.60542 3.07754 3.19737 3.25896 3.27462 3.54629 3.67658 3.74537 4.16015 4.29040 4.38049 4.40073 4.69100 4.81151 4.84422 5.01432 5.05519 5.09261 5.10087 5.14088 5.25517 5.29253 5.37668 5.43528 5.52614 5.61918 5.62069 5.68342 5.72155 5.76296 5.80861 5.86555 5.94500 6.04321 6.10013 6.18592 6.36321 6.54096 6.78768 6.86082 6.95380 7.14541 7.16210 7.48660 8.06119 8.34035 8.48725 8.73704 8.83005 9.40118 10.93508 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.003254 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.495786 B = 8601.740874 C = 9943.300125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.060 3.940 3 H 0.105 0.895 4 C 0.482 3.518 5 O -0.543 6.543 6 N -0.592 5.592 7 C 0.079 3.921 8 C 0.214 3.786 9 C -0.531 4.531 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.895 5.895 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.266 1.266 17 N -0.510 5.510 18 C 0.043 3.957 19 C -0.116 4.116 20 C 0.133 3.867 21 N -0.475 5.475 22 C 0.167 3.833 23 N -0.287 5.287 24 N -0.291 5.291 25 C 0.348 3.652 26 O -0.436 6.436 27 C -0.117 4.117 28 C 0.033 3.967 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.222 0.778 44 H 0.406 0.594 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 2.270 -13.291 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 H 0.123 0.877 4 C 0.267 3.733 5 O -0.422 6.422 6 N -0.323 5.323 7 C -0.065 4.065 8 C 0.093 3.907 9 C -0.569 4.569 10 H 0.091 0.909 11 C -0.129 4.129 12 N -0.533 5.533 13 Si 0.703 3.297 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.191 1.191 17 N -0.234 5.234 18 C -0.086 4.086 19 C -0.155 4.155 20 C 0.030 3.970 21 N -0.177 5.177 22 C -0.120 4.120 23 N -0.128 5.128 24 N -0.143 5.143 25 C 0.043 3.957 26 O -0.235 6.235 27 C -0.156 4.156 28 C -0.095 4.095 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.238 0.762 44 H 0.263 0.737 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.057 1.541 -14.772 19.130 hybrid contribution -0.751 -0.581 3.033 3.178 sum -12.808 0.960 -11.739 17.400 Atomic orbital electron populations 1.21828 0.92289 1.02962 1.02841 1.21934 0.97089 0.99175 0.87037 0.87719 1.21504 0.78791 0.87872 0.85083 1.90577 1.51749 1.15925 1.83923 1.47999 1.63157 1.09605 1.11514 1.21763 0.99985 0.82176 1.02550 1.19677 0.95757 0.93234 0.81985 1.21269 0.89360 1.36520 1.09766 0.90876 1.24861 0.94756 0.95515 0.97811 1.69892 1.06347 1.44690 1.32389 0.86851 0.80200 0.80918 0.81706 1.19956 1.20968 1.19115 1.62518 1.05575 1.20696 1.34649 1.22213 0.87587 1.02065 0.96711 1.21892 1.00415 0.93897 0.99251 1.21784 0.96303 0.97357 0.81543 1.47261 1.42455 1.18442 1.09554 1.26267 1.03648 1.02338 0.79777 1.74219 1.12292 1.00205 1.26130 1.74590 1.20993 1.17893 1.00786 1.22214 0.98286 0.86344 0.88816 1.84939 1.42916 1.40467 1.55195 1.21947 0.92346 1.01460 0.99853 1.22427 0.99489 0.90988 0.96579 0.91759 0.91575 0.90819 0.93383 0.90450 0.91864 0.95286 0.94679 0.92457 0.91215 0.90039 0.90538 0.90308 0.87347 0.76181 0.73686 0.90375 0.91001 0.90216 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.59 37.16 0.32 -1.05 16 2 C 0.06 0.74 2.29 -68.87 -0.16 0.58 16 3 H 0.11 1.18 6.01 -51.93 -0.31 0.86 16 4 C 0.48 8.42 5.93 -10.99 -0.07 8.35 16 5 O -0.54 -11.37 11.91 5.55 0.07 -11.31 16 6 N -0.59 -10.96 2.86 -182.95 -0.52 -11.48 16 7 C 0.08 1.07 10.04 59.85 0.60 1.67 16 8 C 0.21 4.92 4.23 -5.19 -0.02 4.90 16 9 C -0.53 -14.54 9.94 -34.44 -0.34 -14.88 16 10 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 13 Si 0.88 20.87 27.47 -169.99 -4.67 16.21 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 17 N -0.51 -5.98 4.73 -228.08 -1.08 -7.06 16 18 C 0.04 0.56 4.90 -3.84 -0.02 0.54 16 19 C -0.12 -1.26 5.47 -26.65 -0.15 -1.40 16 20 C 0.13 1.38 2.96 -67.81 -0.20 1.18 16 21 N -0.48 -5.18 2.65 -112.49 -0.30 -5.47 16 22 C 0.17 1.74 11.82 -89.07 -1.05 0.68 16 23 N -0.29 -3.96 12.18 29.87 0.36 -3.60 16 24 N -0.29 -4.36 12.22 29.65 0.36 -3.99 16 25 C 0.35 4.47 9.22 -88.77 -0.82 3.65 16 26 O -0.44 -4.87 13.43 -18.31 -0.25 -5.11 16 27 C -0.12 -1.05 5.47 -26.64 -0.15 -1.20 16 28 C 0.03 0.37 4.63 -3.83 -0.02 0.35 16 29 H 0.06 0.66 6.19 -51.93 -0.32 0.33 16 30 H 0.07 0.60 7.89 -51.92 -0.41 0.19 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 34 H 0.06 0.69 5.83 -51.93 -0.30 0.39 16 35 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 36 H 0.04 0.87 6.85 -51.93 -0.36 0.51 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.21 6.04 -51.93 -0.31 0.90 16 39 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.73 7.93 -51.92 -0.41 0.32 16 42 H 0.11 1.29 7.91 -51.93 -0.41 0.88 16 43 H 0.22 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.41 2.36 9.06 45.56 0.41 2.78 16 45 H 0.08 0.62 7.91 -51.93 -0.41 0.20 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.15 5.65 -51.92 -0.29 0.86 16 48 H 0.08 0.82 5.82 -51.93 -0.30 0.52 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.66 376.51 -8.08 -43.75 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.35 Total: 3.12 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.16 Total: 5.35 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.40 Total: -57.68 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.18 Total: -16.42 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.66 -8.08 -43.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579793724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.210 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds