Wall clock time and date at job start Tue Mar 31 2020 20:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47724 * 2 1 4 4 C 1.50701 * 109.47159 * 120.00052 * 2 1 3 5 5 O 1.21286 * 119.99939 * 93.91773 * 4 2 1 6 6 N 1.34773 * 119.99902 * 273.91483 * 4 2 1 7 7 C 1.46499 * 120.00163 * 0.02562 * 6 4 2 8 8 C 1.46509 * 119.99605 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.46810 * 90.00597 * 8 6 4 10 10 H 1.08007 * 120.00175 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99839 * 179.97438 * 9 8 6 12 12 N 1.31521 * 120.00022 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00132 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.46754 * 90.00320 * 13 11 9 15 15 H 1.48497 * 109.47097 * 209.99962 * 13 11 9 16 16 H 1.48498 * 109.47003 * 330.00182 * 13 11 9 17 17 N 1.46899 * 109.47163 * 239.99971 * 2 1 3 18 18 C 1.46840 * 111.00528 * 186.01321 * 17 2 1 19 19 C 1.53032 * 109.52890 * 185.83796 * 18 17 2 20 20 C 1.53120 * 109.28050 * 300.82449 * 19 18 17 21 21 N 1.46498 * 109.52590 * 177.55663 * 20 19 18 22 22 C 1.36605 * 127.11696 * 299.80817 * 21 20 19 23 23 N 1.30337 * 107.27946 * 179.89093 * 22 21 20 24 24 N 1.28531 * 109.98905 * 0.38597 * 23 22 21 25 25 C 1.31029 * 109.86516 * 359.75141 * 24 23 22 26 26 O 1.35537 * 126.44738 * 179.97438 * 25 24 23 27 27 C 1.53117 * 109.21276 * 57.61962 * 20 19 18 28 28 C 1.46841 * 111.00050 * 310.22834 * 17 2 1 29 29 H 1.08990 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46959 * 300.00315 * 1 2 3 31 31 H 1.08999 * 109.47194 * 59.99633 * 1 2 3 32 32 H 1.09003 * 109.46981 * 89.99688 * 7 6 4 33 33 H 1.08999 * 109.47040 * 209.99618 * 7 6 4 34 34 H 1.08996 * 109.47226 * 329.99646 * 7 6 4 35 35 H 1.08999 * 109.46828 * 209.99934 * 8 6 4 36 36 H 1.08994 * 109.47318 * 330.00201 * 8 6 4 37 37 H 0.96999 * 119.99899 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.46176 * 65.81917 * 18 17 2 39 39 H 1.09007 * 109.46563 * 305.86035 * 18 17 2 40 40 H 1.08996 * 109.50888 * 180.87683 * 19 18 17 41 41 H 1.09010 * 109.49834 * 60.76407 * 19 18 17 42 42 H 1.08994 * 109.52080 * 297.68128 * 20 19 18 43 43 H 1.07997 * 126.36039 * 0.04869 * 22 21 20 44 44 H 0.96693 * 114.00296 * 270.00268 * 26 25 24 45 45 H 1.09002 * 109.50585 * 62.31650 * 27 20 19 46 46 H 1.08997 * 109.50449 * 182.44147 * 27 20 19 47 47 H 1.09007 * 109.46484 * 294.17448 * 28 17 2 48 48 H 1.08999 * 109.46505 * 54.14057 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3021 -1.8919 1.1809 6 7 2.1818 -0.0329 2.3859 7 6 1.8554 1.3940 2.4459 8 6 2.6696 -0.7238 3.5822 9 6 4.1735 -0.6407 3.6320 10 1 4.7121 -0.1253 2.8505 11 6 4.8619 -1.2227 4.6752 12 7 6.1744 -1.1507 4.7185 13 14 3.9303 -2.1136 6.0273 14 1 3.7730 -3.5438 5.6603 15 1 4.6869 -2.0097 7.3009 16 1 2.5907 -1.4953 6.1955 17 7 2.0196 -0.6925 -1.1994 18 6 3.4804 -0.8378 -1.1638 19 6 3.9681 -1.4295 -2.4882 20 6 3.3061 -2.7927 -2.7071 21 7 3.7241 -3.3380 -4.0010 22 6 3.5273 -2.7809 -5.2326 23 7 4.0546 -3.5868 -6.1108 24 7 4.5596 -4.6106 -5.5201 25 6 4.3847 -4.5089 -4.2255 26 8 4.7848 -5.4006 -3.2865 27 6 1.7845 -2.6224 -2.6912 28 6 1.3603 -1.9945 -1.3614 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.8080 1.5158 2.7218 33 1 2.4861 1.8800 3.1902 34 1 2.0293 1.8478 1.4702 35 1 2.2501 -0.2518 4.4707 36 1 2.3644 -1.7695 3.5478 37 1 6.6587 -1.5605 5.4522 38 1 3.7596 -1.5009 -0.3451 39 1 3.9390 0.1394 -1.0118 40 1 5.0507 -1.5517 -2.4556 41 1 3.7014 -0.7599 -3.3060 42 1 3.6046 -3.4746 -1.9109 43 1 3.0296 -1.8451 -5.4400 44 1 4.1281 -6.0812 -3.0853 45 1 1.4824 -1.9721 -3.5122 46 1 1.3081 -3.5963 -2.8032 47 1 1.6493 -2.6525 -0.5417 48 1 0.2790 -1.8577 -1.3529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579793724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:58 Heat of formation + Delta-G solvation = 3.292292 kcal Electronic energy + Delta-G solvation = -30732.067360 eV Core-core repulsion = 26630.737663 eV Total energy + Delta-G solvation = -4101.329697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.12633 -41.64448 -39.46138 -38.70626 -36.90291 -36.34067 -34.78977 -33.66346 -32.10815 -30.93374 -30.90076 -29.91114 -27.44390 -26.34620 -25.32088 -24.19276 -23.73491 -23.30544 -22.55645 -20.93053 -19.98444 -19.81550 -19.17522 -18.24834 -18.08265 -17.58889 -17.09221 -16.62415 -16.43964 -16.30625 -15.92901 -15.73736 -15.48856 -15.20353 -14.97560 -14.69473 -14.60590 -14.33775 -13.84591 -13.69051 -13.57809 -13.40448 -13.32135 -13.06097 -13.03367 -12.93676 -12.66902 -12.53558 -12.47338 -12.24824 -12.12673 -12.00460 -11.88756 -11.80333 -11.74769 -11.30884 -11.07888 -10.97793 -10.87214 -10.30383 -9.39340 -9.19610 -8.38073 -6.43172 0.58090 1.08223 1.28814 1.31855 1.40629 1.68542 1.76013 2.26345 2.33611 2.69087 2.76909 2.96638 3.28483 3.53599 3.63826 3.69544 3.80758 3.94500 4.11461 4.17608 4.19416 4.22024 4.38328 4.43345 4.46975 4.49145 4.63543 4.71630 4.75525 4.77770 4.79417 4.83061 4.85901 4.90254 4.95083 5.00380 5.02133 5.04605 5.26573 5.29246 5.42262 5.59170 5.61210 5.82891 5.96720 6.19374 6.38429 6.58336 6.69899 7.18187 7.40477 7.55502 8.78609 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.003254 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.495786 B = 8601.740874 C = 9943.300125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.123 0.877 4 C 0.472 3.528 5 O -0.586 6.586 6 N -0.605 5.605 7 C 0.073 3.927 8 C 0.224 3.776 9 C -0.533 4.533 10 H 0.027 0.973 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.278 1.278 15 H -0.277 1.277 16 H -0.237 1.237 17 N -0.491 5.491 18 C 0.048 3.952 19 C -0.108 4.108 20 C 0.140 3.860 21 N -0.472 5.472 22 C 0.187 3.813 23 N -0.322 5.322 24 N -0.328 5.328 25 C 0.343 3.657 26 O -0.449 6.449 27 C -0.106 4.106 28 C 0.034 3.966 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.268 0.732 38 H 0.018 0.982 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.266 0.734 44 H 0.426 0.574 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.779 3.924 -14.163 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 H 0.140 0.860 4 C 0.259 3.741 5 O -0.467 6.467 6 N -0.336 5.336 7 C -0.069 4.069 8 C 0.101 3.899 9 C -0.571 4.571 10 H 0.046 0.954 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.770 3.230 14 H -0.204 1.204 15 H -0.202 1.202 16 H -0.160 1.160 17 N -0.214 5.214 18 C -0.081 4.081 19 C -0.146 4.146 20 C 0.037 3.963 21 N -0.173 5.173 22 C -0.100 4.100 23 N -0.163 5.163 24 N -0.179 5.179 25 C 0.037 3.963 26 O -0.251 6.251 27 C -0.144 4.144 28 C -0.094 4.094 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.282 0.718 44 H 0.287 0.713 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.625 3.220 -15.669 22.362 hybrid contribution 0.411 -1.066 3.268 3.462 sum -15.214 2.154 -12.401 19.746 Atomic orbital electron populations 1.21855 0.89395 1.03170 1.04848 1.22135 0.99194 0.99066 0.84179 0.85966 1.22631 0.77729 0.87633 0.86058 1.90575 1.53324 1.18178 1.84659 1.48134 1.63226 1.11623 1.10604 1.22050 1.01697 0.79147 1.03969 1.19283 0.92641 0.93103 0.84884 1.21531 0.91938 1.35406 1.08239 0.95438 1.25848 0.95613 0.96475 1.00803 1.70053 1.08383 1.46406 1.33703 0.85732 0.80076 0.79071 0.78161 1.20366 1.20185 1.16030 1.62648 1.04321 1.20894 1.33560 1.22072 0.88895 1.00821 0.96308 1.21812 0.99462 0.94591 0.98756 1.21671 0.97519 0.96370 0.80715 1.47263 1.42262 1.17951 1.09872 1.27109 1.01684 1.02548 0.78647 1.74144 1.13934 1.00910 1.27275 1.74509 1.22392 1.19150 1.01843 1.22311 0.98242 0.87103 0.88671 1.84884 1.44314 1.41113 1.54803 1.21896 0.90694 1.02457 0.99365 1.22437 1.00602 0.89900 0.96422 0.92455 0.90512 0.87849 0.89873 0.91922 0.89041 0.93573 0.96557 0.92341 0.96366 0.90196 0.92116 0.87357 0.89810 0.71843 0.71318 0.87669 0.90000 0.94069 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.59 71.98 0.62 -1.44 16 2 C 0.07 1.48 2.29 44.17 0.10 1.58 16 3 H 0.12 2.32 6.01 -2.39 -0.01 2.31 16 4 C 0.47 16.43 5.93 87.66 0.52 16.95 16 5 O -0.59 -25.58 11.91 -3.05 -0.04 -25.62 16 6 N -0.60 -22.15 2.86 -851.13 -2.43 -24.58 16 7 C 0.07 1.82 10.04 127.77 1.28 3.10 16 8 C 0.22 10.35 4.23 85.63 0.36 10.71 16 9 C -0.53 -30.37 9.94 25.60 0.25 -30.12 16 10 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 11 C 0.01 0.62 5.47 84.65 0.46 1.08 16 12 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 13 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 17 N -0.49 -10.49 4.73 -875.52 -4.14 -14.62 16 18 C 0.05 1.27 4.90 86.33 0.42 1.69 16 19 C -0.11 -2.23 5.47 30.65 0.17 -2.06 16 20 C 0.14 2.77 2.96 45.07 0.13 2.91 16 21 N -0.47 -9.64 2.65 -620.61 -1.65 -11.28 16 22 C 0.19 3.41 11.82 179.80 2.12 5.53 16 23 N -0.32 -8.54 12.18 -59.40 -0.72 -9.27 16 24 N -0.33 -9.81 12.22 -173.68 -2.12 -11.93 16 25 C 0.34 8.77 9.22 179.70 1.66 10.43 16 26 O -0.45 -10.30 13.43 -88.42 -1.19 -11.48 16 27 C -0.11 -1.61 5.47 30.65 0.17 -1.44 16 28 C 0.03 0.70 4.63 86.33 0.40 1.10 16 29 H 0.06 0.98 6.19 -2.39 -0.01 0.96 16 30 H 0.08 1.04 7.89 -2.38 -0.02 1.02 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 33 H 0.06 1.74 8.07 -2.39 -0.02 1.72 16 34 H 0.09 1.72 5.83 -2.39 -0.01 1.71 16 35 H 0.05 1.98 7.13 -2.39 -0.02 1.96 16 36 H 0.02 0.82 6.85 -2.39 -0.02 0.80 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.02 0.68 6.04 -2.39 -0.01 0.66 16 39 H 0.08 2.10 8.12 -2.38 -0.02 2.08 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 1.63 7.93 -2.38 -0.02 1.61 16 42 H 0.08 2.10 7.91 -2.39 -0.02 2.08 16 43 H 0.27 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.43 5.15 9.06 -74.06 -0.67 4.48 16 45 H 0.10 1.11 7.91 -2.39 -0.02 1.10 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.04 1.21 5.65 -2.38 -0.01 1.20 16 48 H 0.11 1.72 5.82 -2.39 -0.01 1.71 16 Total: -1.00 -84.77 376.51 -1.16 -85.93 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.27 Total: 16.16 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 8.67 Total: 20.02 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -10.76 Total: -130.47 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.22 Total: -37.10 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -84.77 -1.16 -85.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579793724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.219 kcal (2) G-P(sol) polarization free energy of solvation -84.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds