Wall clock time and date at job start Tue Mar 31 2020 20:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46924 * 2 1 4 4 C 1.50699 * 109.47564 * 120.00742 * 2 1 3 5 5 O 1.21278 * 119.99974 * 88.32961 * 4 2 1 6 6 N 1.34779 * 119.99691 * 268.33770 * 4 2 1 7 7 C 1.47025 * 125.64886 * 5.05478 * 6 4 2 8 8 C 1.54319 * 107.27027 * 181.02172 * 7 6 4 9 9 C 1.55160 * 102.94423 * 22.19201 * 8 7 6 10 10 O 1.42907 * 111.00339 * 82.56777 * 9 8 7 11 11 C 1.50693 * 111.00868 * 206.38540 * 9 8 7 12 12 H 1.07997 * 120.00421 * 118.54199 * 11 9 8 13 13 C 1.37881 * 120.00123 * 298.54740 * 11 9 8 14 14 N 1.31515 * 119.99727 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00394 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46774 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46963 * 119.99648 * 15 13 11 18 18 H 1.48495 * 109.47402 * 239.99990 * 15 13 11 19 19 C 1.47422 * 125.64550 * 184.74358 * 6 4 2 20 20 N 1.46508 * 109.46944 * 240.00931 * 2 1 3 21 21 N 1.29015 * 126.43308 * 299.68332 * 20 2 1 22 22 N 1.28745 * 108.80971 * 179.83716 * 21 20 2 23 23 N 1.28842 * 109.38997 * 0.43758 * 22 21 20 24 24 C 1.31063 * 107.99484 * 359.73731 * 23 22 21 25 25 C 1.50703 * 126.66048 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47041 * 240.03927 * 25 24 23 27 27 C 1.52994 * 109.47111 * 0.04251 * 25 24 23 28 28 C 1.53000 * 109.46969 * 120.04076 * 25 24 23 29 29 H 1.09000 * 109.47034 * 175.58967 * 1 2 3 30 30 H 1.09003 * 109.47471 * 55.59162 * 1 2 3 31 31 H 1.08995 * 109.47208 * 295.58997 * 1 2 3 32 32 H 1.09005 * 109.88061 * 300.43719 * 7 6 4 33 33 H 1.09000 * 109.88384 * 61.45131 * 7 6 4 34 34 H 1.09005 * 110.72081 * 140.55042 * 8 7 6 35 35 H 1.08996 * 110.72242 * 263.82811 * 8 7 6 36 36 H 0.96699 * 113.99419 * 61.46162 * 10 9 8 37 37 H 0.96998 * 120.00097 * 180.02562 * 14 13 11 38 38 H 1.08997 * 110.36583 * 274.74569 * 19 6 4 39 39 H 1.08996 * 110.36712 * 37.06999 * 19 6 4 40 40 H 1.09004 * 109.47268 * 60.00446 * 26 25 24 41 41 H 1.09009 * 109.47052 * 180.02562 * 26 25 24 42 42 H 1.09002 * 109.47467 * 299.99732 * 26 25 24 43 43 H 1.09003 * 109.47458 * 59.99980 * 27 25 24 44 44 H 1.09000 * 109.46757 * 179.97438 * 27 25 24 45 45 H 1.08997 * 109.47455 * 299.99782 * 27 25 24 46 46 H 1.09009 * 109.47296 * 59.99978 * 28 25 24 47 47 H 1.09000 * 109.47311 * 179.97438 * 28 25 24 48 48 H 1.09001 * 109.47641 * 300.00344 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.2057 -1.9107 1.2092 6 7 2.2890 -0.0122 2.3542 7 6 2.0255 1.4207 2.5516 8 6 2.5020 1.7824 3.9741 9 6 3.5250 0.6604 4.2938 10 8 4.8045 0.9585 3.7315 11 6 3.6309 0.4332 5.7798 12 1 3.3722 -0.5279 6.1989 13 6 4.0580 1.4524 6.6043 14 7 4.3734 2.6227 6.0939 15 14 4.1886 1.1711 8.4464 16 1 3.7783 -0.2202 8.7649 17 1 5.5920 1.3858 8.8815 18 1 3.2987 2.1240 9.1570 19 6 2.8743 -0.5602 3.5913 20 7 2.0183 -0.6905 -1.1964 21 7 1.7890 -1.9182 -1.5196 22 7 2.3771 -2.1701 -2.6369 23 7 2.9974 -1.1155 -3.0410 24 6 2.7952 -0.1649 -2.1617 25 6 3.3293 1.2431 -2.2198 26 6 4.2016 1.5088 -0.9913 27 6 4.1671 1.4187 -3.4879 28 6 2.1613 2.2312 -2.2394 29 1 -0.3633 -1.0246 -0.0790 30 1 -0.3634 0.5807 -0.8479 31 1 -0.3633 0.4439 0.9268 32 1 2.5790 2.0041 1.8157 33 1 0.9580 1.6182 2.4543 34 1 2.9859 2.7591 3.9821 35 1 1.6698 1.7573 4.6776 36 1 5.2044 1.7702 4.0724 37 1 4.6742 3.3396 6.6739 38 1 2.0960 -0.9923 4.2202 39 1 3.6305 -1.3084 3.3542 40 1 5.0337 0.8049 -0.9774 41 1 4.5876 2.5274 -1.0332 42 1 3.6047 1.3837 -0.0879 43 1 3.5456 1.2294 -4.3632 44 1 4.5530 2.4373 -3.5301 45 1 4.9992 0.7148 -3.4741 46 1 1.5643 2.1060 -1.3359 47 1 2.5476 3.2496 -2.2810 48 1 1.5397 2.0419 -3.1145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:30 Heat of formation + Delta-G solvation = 9.264379 kcal Electronic energy + Delta-G solvation = -31585.938725 eV Core-core repulsion = 27484.867997 eV Total energy + Delta-G solvation = -4101.070728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.40205 -41.43873 -39.26025 -38.48264 -36.87865 -36.20185 -34.21258 -33.29189 -32.41423 -31.35689 -30.05842 -28.51821 -28.33094 -27.37674 -26.40149 -24.98029 -24.66952 -23.37184 -21.73566 -21.16726 -20.55669 -19.16186 -18.74149 -18.36750 -17.96927 -16.93765 -16.83622 -16.73360 -16.39251 -16.14718 -15.60124 -15.22816 -15.04277 -14.87139 -14.50841 -14.21330 -14.12525 -13.85934 -13.79401 -13.61481 -13.42092 -13.29599 -13.21588 -13.09031 -13.05465 -12.94536 -12.74465 -12.71947 -12.65103 -12.49203 -12.33822 -12.25330 -12.18338 -12.05025 -11.85651 -11.78438 -11.31533 -11.22406 -10.92779 -10.63687 -10.15772 -9.74660 -8.24935 -6.38280 0.08377 0.62901 1.08674 1.32705 1.40371 1.46694 1.54547 1.75144 2.39814 2.74121 2.90814 3.01629 3.15560 3.33198 3.43232 3.73611 3.78029 3.91624 3.94654 4.00799 4.22158 4.29177 4.30864 4.39863 4.41568 4.52930 4.53634 4.59242 4.64019 4.67760 4.79791 4.80273 4.85002 4.92723 4.94679 4.95361 5.05446 5.14421 5.15209 5.22090 5.28685 5.38590 5.46063 5.58290 5.78212 6.07620 6.34923 6.64564 6.80012 7.32032 7.41105 7.47084 8.80855 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.003335 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.674295 B = 8392.937671 C = 8953.005853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.170 0.830 4 C 0.508 3.492 5 O -0.568 6.568 6 N -0.597 5.597 7 C 0.090 3.910 8 C -0.124 4.124 9 C 0.237 3.763 10 O -0.593 6.593 11 C -0.564 4.564 12 H 0.049 0.951 13 C 0.045 3.955 14 N -0.900 5.900 15 Si 0.952 3.048 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.126 3.874 20 N -0.291 5.291 21 N -0.088 5.088 22 N -0.114 5.114 23 N -0.323 5.323 24 C 0.201 3.799 25 C 0.013 3.987 26 C -0.152 4.152 27 C -0.129 4.129 28 C -0.150 4.150 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.380 0.620 37 H 0.272 0.728 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.112 0.888 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 10.384 -13.251 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 H 0.187 0.813 4 C 0.294 3.706 5 O -0.447 6.447 6 N -0.329 5.329 7 C -0.031 4.031 8 C -0.163 4.163 9 C 0.197 3.803 10 O -0.401 6.401 11 C -0.602 4.602 12 H 0.068 0.932 13 C -0.157 4.157 14 N -0.539 5.539 15 Si 0.778 3.222 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.004 3.996 20 N -0.093 5.093 21 N -0.073 5.073 22 N -0.107 5.107 23 N -0.172 5.172 24 C -0.077 4.077 25 C 0.009 3.991 26 C -0.210 4.210 27 C -0.187 4.187 28 C -0.208 4.208 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.134 0.866 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.120 0.880 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.130 0.870 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.428 7.979 -14.134 17.850 hybrid contribution 0.660 0.260 2.196 2.308 sum -6.768 8.239 -11.938 16.006 Atomic orbital electron populations 1.22243 0.86742 1.05175 1.07380 1.22247 1.00502 0.96980 0.78071 0.81275 1.20357 0.78806 0.87088 0.84301 1.90788 1.54099 1.15919 1.83893 1.48580 1.59931 1.11990 1.12358 1.22585 1.02408 0.78751 0.99350 1.22947 0.99328 1.00695 0.93283 1.19761 0.81232 0.89590 0.89701 1.86132 1.35980 1.48687 1.69326 1.21661 1.47211 0.98693 0.92630 0.93242 1.25453 0.93382 0.94610 1.02294 1.69737 1.44263 1.02964 1.36909 0.85605 0.77736 0.78064 0.80761 1.20365 1.20851 1.19842 1.22257 0.95983 0.97109 0.84285 1.48335 1.34235 1.08021 1.18723 1.78974 1.20139 0.97848 1.10388 1.78588 1.08795 1.19277 1.04058 1.74870 1.20263 0.96932 1.25088 1.26956 0.93971 1.00837 0.85939 1.19633 0.97631 0.82158 0.99657 1.22146 0.99027 1.05012 0.94791 1.21765 0.98974 1.03795 0.94118 1.22176 0.95738 0.99723 1.03146 0.91742 0.87065 0.86242 0.89444 0.87679 0.89831 0.91549 0.77078 0.91880 0.90587 0.94230 0.93933 0.86641 0.93285 0.91654 0.88001 0.93349 0.91551 0.86965 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.40 71.98 0.68 -1.97 16 2 C 0.13 2.99 1.83 44.24 0.08 3.07 16 3 H 0.17 2.82 2.61 -2.39 -0.01 2.81 16 4 C 0.51 17.26 7.00 87.66 0.61 17.87 16 5 O -0.57 -25.27 16.18 -3.02 -0.05 -25.32 16 6 N -0.60 -19.88 3.32 -811.36 -2.70 -22.58 16 7 C 0.09 2.31 6.24 86.73 0.54 2.85 16 8 C -0.12 -4.36 5.38 31.78 0.17 -4.19 16 9 C 0.24 10.37 0.87 -10.07 -0.01 10.36 16 10 O -0.59 -27.57 13.17 -148.98 -1.96 -29.54 16 11 C -0.56 -27.73 8.27 25.60 0.21 -27.52 16 12 H 0.05 2.52 7.79 -2.91 -0.02 2.49 16 13 C 0.04 2.13 5.29 84.66 0.45 2.58 16 14 N -0.90 -42.03 10.76 21.45 0.23 -41.80 16 15 Si 0.95 39.03 29.54 68.60 2.03 41.05 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 17 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 C 0.13 5.27 6.08 86.93 0.53 5.80 16 20 N -0.29 -8.53 2.99 -321.36 -0.96 -9.49 16 21 N -0.09 -3.23 12.12 37.02 0.45 -2.78 16 22 N -0.11 -4.30 13.43 37.01 0.50 -3.80 16 23 N -0.32 -10.68 11.71 -50.45 -0.59 -11.28 16 24 C 0.20 5.39 6.40 138.14 0.88 6.27 16 25 C 0.01 0.22 0.75 -52.93 -0.04 0.18 16 26 C -0.15 -2.72 8.31 71.98 0.60 -2.12 16 27 C -0.13 -1.91 8.00 71.98 0.58 -1.33 16 28 C -0.15 -1.42 8.31 71.98 0.60 -0.82 16 29 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.12 1.42 7.90 -2.39 -0.02 1.40 16 32 H 0.09 1.82 7.07 -2.38 -0.02 1.80 16 33 H 0.11 1.82 7.90 -2.39 -0.02 1.80 16 34 H 0.08 3.07 7.55 -2.38 -0.02 3.05 16 35 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 36 H 0.38 17.52 7.56 -74.06 -0.56 16.96 16 37 H 0.27 12.11 8.31 -92.71 -0.77 11.34 16 38 H 0.08 3.13 8.04 -2.39 -0.02 3.11 16 39 H 0.04 1.87 8.08 -2.39 -0.02 1.85 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.05 0.96 5.02 -2.39 -0.01 0.95 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 0.52 5.58 -2.38 -0.01 0.50 16 47 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -70.63 381.36 3.25 -67.38 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.43 Total: 27.13 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.88 Total: 11.02 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -3.07 Total: -91.73 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -2.01 Total: -54.86 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.05 kcal Total: -70.63 3.25 -67.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.641 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds