Wall clock time and date at job start Tue Mar 31 2020 20:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46952 * 2 1 4 4 C 1.50690 * 109.47300 * 120.00386 * 2 1 3 5 5 O 1.21289 * 120.00325 * 92.79569 * 4 2 1 6 6 N 1.34781 * 119.99860 * 272.80102 * 4 2 1 7 7 C 1.47014 * 125.64938 * 5.55532 * 6 4 2 8 8 C 1.54322 * 107.27302 * 178.89853 * 7 6 4 9 9 C 1.55161 * 102.94105 * 337.80413 * 8 7 6 10 10 O 1.42898 * 111.00379 * 277.42929 * 9 8 7 11 11 C 1.50703 * 111.00290 * 153.61485 * 9 8 7 12 12 H 1.08000 * 119.99885 * 2.08053 * 11 9 8 13 13 C 1.37880 * 119.99833 * 182.08029 * 11 9 8 14 14 N 1.31510 * 119.99644 * 186.53734 * 13 11 9 15 15 Si 1.86799 * 119.99854 * 6.54351 * 13 11 9 16 16 H 1.48497 * 109.47149 * 92.55074 * 15 13 11 17 17 H 1.48500 * 109.46675 * 212.55073 * 15 13 11 18 18 H 1.48498 * 109.47164 * 332.54847 * 15 13 11 19 19 C 1.47423 * 125.64665 * 185.50429 * 6 4 2 20 20 N 1.46504 * 109.46541 * 240.00280 * 2 1 3 21 21 N 1.29013 * 126.43777 * 299.68237 * 20 2 1 22 22 N 1.28745 * 108.80642 * 179.83663 * 21 20 2 23 23 N 1.28837 * 109.39625 * 0.44721 * 22 21 20 24 24 C 1.31074 * 107.99278 * 359.72559 * 23 22 21 25 25 C 1.50697 * 126.66108 * 180.02562 * 24 23 22 26 26 C 1.53001 * 109.47060 * 239.96185 * 25 24 23 27 27 C 1.53003 * 109.47122 * 359.95981 * 25 24 23 28 28 C 1.53000 * 109.47001 * 119.95999 * 25 24 23 29 29 H 1.08994 * 109.47132 * 175.18418 * 1 2 3 30 30 H 1.09003 * 109.46592 * 295.18252 * 1 2 3 31 31 H 1.08999 * 109.46995 * 55.17605 * 1 2 3 32 32 H 1.08997 * 109.88332 * 59.48003 * 7 6 4 33 33 H 1.09005 * 109.88262 * 298.31010 * 7 6 4 34 34 H 1.09006 * 110.72363 * 219.44334 * 8 7 6 35 35 H 1.08994 * 110.87650 * 96.23796 * 8 7 6 36 36 H 0.96703 * 113.99969 * 298.54035 * 10 9 8 37 37 H 0.97005 * 119.99553 * 179.97438 * 14 13 11 38 38 H 1.08995 * 110.36831 * 85.33310 * 19 6 4 39 39 H 1.09005 * 110.37045 * 323.00965 * 19 6 4 40 40 H 1.08998 * 109.46919 * 59.99877 * 26 25 24 41 41 H 1.08997 * 109.47220 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.47164 * 300.00122 * 26 25 24 43 43 H 1.08997 * 109.47166 * 59.99764 * 27 25 24 44 44 H 1.08995 * 109.46913 * 180.02562 * 27 25 24 45 45 H 1.08998 * 109.47290 * 300.00388 * 27 25 24 46 46 H 1.09000 * 109.46910 * 60.00070 * 28 25 24 47 47 H 1.09006 * 109.46537 * 179.97438 * 28 25 24 48 48 H 1.08990 * 109.47208 * 299.99733 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.2829 -1.8964 1.1861 6 7 2.2033 -0.0280 2.3800 7 6 1.8324 1.3765 2.6059 8 6 2.1875 1.7145 4.0692 9 6 2.2159 0.3209 4.7507 10 8 0.8987 -0.0998 5.1113 11 6 3.1262 0.3254 5.9518 12 1 3.6247 1.2365 6.2480 13 6 3.3225 -0.8336 6.6723 14 7 4.0118 -0.8030 7.7919 15 14 2.6096 -2.4473 6.0581 16 1 3.6201 -3.1508 5.2280 17 1 2.2417 -3.2990 7.2176 18 1 1.4002 -2.1748 5.2405 19 6 2.7922 -0.5667 3.6195 20 7 2.0183 -0.6906 -1.1963 21 7 1.7891 -1.9184 -1.5195 22 7 2.3771 -2.1702 -2.6367 23 7 2.9975 -1.1158 -3.0409 24 6 2.7952 -0.1650 -2.1616 25 6 3.3285 1.2432 -2.2203 26 6 4.1998 1.5103 -0.9913 27 6 4.1673 1.4184 -3.4879 28 6 2.1600 2.2306 -2.2415 29 1 -0.3633 -1.0240 -0.0863 30 1 -0.3632 0.4373 0.9300 31 1 -0.3633 0.5869 -0.8436 32 1 0.7625 1.5080 2.4443 33 1 2.3936 2.0215 1.9298 34 1 1.4203 2.3468 4.5161 35 1 3.1644 2.1939 4.1309 36 1 0.4594 0.4832 5.7456 37 1 4.1496 -1.6184 8.2990 38 1 3.8787 -0.4855 3.5898 39 1 2.4923 -1.6050 3.7620 40 1 5.0322 0.8068 -0.9763 41 1 4.5859 2.5287 -1.0340 42 1 3.6022 1.3854 -0.0883 43 1 3.5467 1.2281 -4.3635 44 1 4.5534 2.4368 -3.5301 45 1 4.9998 0.7150 -3.4728 46 1 1.5624 2.1057 -1.3385 47 1 2.5458 3.2492 -2.2835 48 1 1.5394 2.0404 -3.1170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:33 Heat of formation + Delta-G solvation = 45.550325 kcal Electronic energy + Delta-G solvation = -31665.244713 eV Core-core repulsion = 27565.747462 eV Total energy + Delta-G solvation = -4099.497251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.28542 -40.21137 -38.07135 -37.68575 -35.78928 -34.81350 -32.55639 -32.21858 -31.35928 -30.32756 -28.81524 -27.89747 -27.85995 -26.04122 -25.07339 -23.96203 -23.42454 -22.40100 -20.46135 -20.01167 -19.51854 -17.70647 -17.55155 -17.24869 -16.79425 -16.02355 -15.69829 -15.52742 -14.97205 -14.66581 -14.50550 -14.39622 -14.13843 -13.77722 -13.37248 -13.05836 -12.98656 -12.91177 -12.89905 -12.80182 -12.60763 -12.41401 -12.28638 -12.16724 -12.09426 -11.98502 -11.83318 -11.58354 -11.55691 -11.32251 -11.10442 -11.04543 -10.98037 -10.78156 -10.47467 -10.25652 -10.12710 -9.72628 -9.14575 -8.84082 -8.63379 -8.41341 -6.34927 -4.48778 1.18412 1.66382 2.24830 2.48162 2.94842 3.28344 3.40458 3.55010 3.57560 3.88744 4.06452 4.16583 4.27127 4.33045 4.36488 4.56820 4.78100 4.89200 4.94275 4.98004 5.00249 5.02963 5.11663 5.20913 5.25126 5.27831 5.29581 5.36500 5.41481 5.46382 5.50430 5.60404 5.64345 5.71230 5.75068 5.79114 5.89510 5.94842 6.06017 6.24722 6.31112 6.35452 6.47770 6.85480 7.32096 7.56285 8.03638 8.07421 8.58808 8.63772 8.76135 9.28252 10.74682 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.003682 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.681441 B = 7603.285294 C = 8063.691183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 H 0.138 0.862 4 C 0.512 3.488 5 O -0.511 6.511 6 N -0.603 5.603 7 C 0.095 3.905 8 C -0.145 4.145 9 C 0.218 3.782 10 O -0.569 6.569 11 C -0.555 4.555 12 H 0.082 0.918 13 C 0.094 3.906 14 N -0.881 5.881 15 Si 0.861 3.139 16 H -0.283 1.283 17 H -0.293 1.293 18 H -0.223 1.223 19 C 0.109 3.891 20 N -0.290 5.290 21 N -0.057 5.057 22 N -0.086 5.086 23 N -0.301 5.301 24 C 0.188 3.812 25 C 0.014 3.986 26 C -0.154 4.154 27 C -0.130 4.130 28 C -0.151 4.151 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.365 0.635 37 H 0.269 0.731 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 12.669 -17.168 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.155 0.845 4 C 0.296 3.704 5 O -0.385 6.385 6 N -0.337 5.337 7 C -0.028 4.028 8 C -0.183 4.183 9 C 0.178 3.822 10 O -0.375 6.375 11 C -0.592 4.592 12 H 0.100 0.900 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.688 3.312 16 H -0.210 1.210 17 H -0.219 1.219 18 H -0.146 1.146 19 C -0.011 4.011 20 N -0.092 5.092 21 N -0.042 5.042 22 N -0.080 5.080 23 N -0.149 5.149 24 C -0.090 4.090 25 C 0.010 3.990 26 C -0.211 4.211 27 C -0.188 4.188 28 C -0.209 4.209 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.212 0.788 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.100 0.900 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.919 10.031 -18.055 21.232 hybrid contribution -0.258 0.329 0.840 0.938 sum -5.177 10.360 -17.215 20.748 Atomic orbital electron populations 1.22134 0.89256 1.05711 1.04697 1.21969 0.98733 0.96699 0.81073 0.84471 1.19662 0.79937 0.87371 0.83451 1.90835 1.50097 1.14021 1.83592 1.48632 1.60244 1.13054 1.11725 1.22209 0.99626 0.81550 0.99396 1.23202 1.02595 1.00248 0.92227 1.20069 0.82624 0.87661 0.91849 1.86560 1.30647 1.54652 1.65650 1.21146 1.29353 0.98433 1.10293 0.89982 1.24951 0.93157 0.99475 0.93726 1.69917 1.38798 1.29094 1.13752 0.87263 0.82126 0.82636 0.79172 1.20970 1.21937 1.14586 1.23126 0.97758 0.99694 0.80554 1.48164 1.34219 1.08703 1.18140 1.79058 1.18995 0.96036 1.10136 1.78646 1.07841 1.18021 1.03453 1.74943 1.19618 0.96641 1.23721 1.26050 0.95930 0.99690 0.87332 1.19259 0.96345 0.84152 0.99231 1.22118 0.99957 1.03760 0.95310 1.21739 0.99822 1.02392 0.94873 1.22108 0.96918 0.99234 1.02670 0.89551 0.88581 0.90262 0.91481 0.92066 0.90369 0.89849 0.78812 0.92139 0.89688 0.90579 0.91318 0.89847 0.92530 0.91391 0.91178 0.91367 0.92362 0.89975 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.40 37.16 0.35 -1.23 16 2 C 0.12 1.48 1.74 -69.08 -0.12 1.36 16 3 H 0.14 1.21 2.84 -51.93 -0.15 1.07 16 4 C 0.51 8.72 7.04 -10.99 -0.08 8.64 16 5 O -0.51 -11.23 16.04 5.55 0.09 -11.14 16 6 N -0.60 -10.00 3.33 -170.53 -0.57 -10.57 16 7 C 0.09 1.16 6.26 -3.07 -0.02 1.14 16 8 C -0.14 -2.14 6.13 -24.90 -0.15 -2.29 16 9 C 0.22 4.38 0.69 -89.62 -0.06 4.32 16 10 O -0.57 -11.33 10.35 -35.23 -0.36 -11.70 16 11 C -0.56 -13.69 8.86 -34.44 -0.30 -14.00 16 12 H 0.08 2.16 8.02 -52.49 -0.42 1.74 16 13 C 0.09 2.51 5.46 -17.82 -0.10 2.41 16 14 N -0.88 -25.19 13.96 55.43 0.77 -24.41 16 15 Si 0.86 21.31 24.39 -169.99 -4.15 17.17 16 16 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.22 -5.46 4.97 56.52 0.28 -5.18 16 19 C 0.11 2.26 4.94 -2.53 -0.01 2.25 16 20 N -0.29 -4.19 2.97 -52.93 -0.16 -4.35 16 21 N -0.06 -1.01 12.09 60.35 0.73 -0.28 16 22 N -0.09 -1.56 13.43 60.35 0.81 -0.75 16 23 N -0.30 -4.74 11.71 32.70 0.38 -4.36 16 24 C 0.19 2.45 6.40 -155.43 -1.00 1.45 16 25 C 0.01 0.12 0.75 -155.66 -0.12 0.00 16 26 C -0.15 -1.25 8.31 37.16 0.31 -0.94 16 27 C -0.13 -0.98 8.00 37.16 0.30 -0.68 16 28 C -0.15 -0.89 8.31 37.16 0.31 -0.58 16 29 H 0.09 1.04 8.12 -51.93 -0.42 0.61 16 30 H 0.10 0.81 7.27 -51.93 -0.38 0.43 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.68 7.27 -51.93 -0.38 0.30 16 33 H 0.06 0.55 7.76 -51.93 -0.40 0.15 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.23 8.02 -51.93 -0.42 0.82 16 36 H 0.36 6.05 9.11 45.56 0.41 6.46 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 1.79 8.03 -51.93 -0.42 1.37 16 39 H 0.08 1.80 4.67 -51.93 -0.24 1.56 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.49 5.58 -51.93 -0.29 0.20 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.31 5.58 -51.93 -0.29 0.02 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -35.05 373.59 -3.96 -39.02 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.45 Total: 3.89 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.69 Total: 1.86 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 1.97 Total: -44.72 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.28 Total: -22.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.05 -3.96 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.567 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds