Wall clock time and date at job start Tue Mar 31 2020 20:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46952 * 2 1 4 4 C 1.50690 * 109.47300 * 120.00386 * 2 1 3 5 5 O 1.21289 * 120.00325 * 92.79569 * 4 2 1 6 6 N 1.34781 * 119.99860 * 272.80102 * 4 2 1 7 7 C 1.47014 * 125.64938 * 5.55532 * 6 4 2 8 8 C 1.54322 * 107.27302 * 178.89853 * 7 6 4 9 9 C 1.55161 * 102.94105 * 337.80413 * 8 7 6 10 10 O 1.42898 * 111.00379 * 277.42929 * 9 8 7 11 11 C 1.50703 * 111.00290 * 153.61485 * 9 8 7 12 12 H 1.08000 * 119.99885 * 2.08053 * 11 9 8 13 13 C 1.37880 * 119.99833 * 182.08029 * 11 9 8 14 14 N 1.31510 * 119.99644 * 186.53734 * 13 11 9 15 15 Si 1.86799 * 119.99854 * 6.54351 * 13 11 9 16 16 H 1.48497 * 109.47149 * 92.55074 * 15 13 11 17 17 H 1.48500 * 109.46675 * 212.55073 * 15 13 11 18 18 H 1.48498 * 109.47164 * 332.54847 * 15 13 11 19 19 C 1.47423 * 125.64665 * 185.50429 * 6 4 2 20 20 N 1.46504 * 109.46541 * 240.00280 * 2 1 3 21 21 N 1.29013 * 126.43777 * 299.68237 * 20 2 1 22 22 N 1.28745 * 108.80642 * 179.83663 * 21 20 2 23 23 N 1.28837 * 109.39625 * 0.44721 * 22 21 20 24 24 C 1.31074 * 107.99278 * 359.72559 * 23 22 21 25 25 C 1.50697 * 126.66108 * 180.02562 * 24 23 22 26 26 C 1.53001 * 109.47060 * 239.96185 * 25 24 23 27 27 C 1.53003 * 109.47122 * 359.95981 * 25 24 23 28 28 C 1.53000 * 109.47001 * 119.95999 * 25 24 23 29 29 H 1.08994 * 109.47132 * 175.18418 * 1 2 3 30 30 H 1.09003 * 109.46592 * 295.18252 * 1 2 3 31 31 H 1.08999 * 109.46995 * 55.17605 * 1 2 3 32 32 H 1.08997 * 109.88332 * 59.48003 * 7 6 4 33 33 H 1.09005 * 109.88262 * 298.31010 * 7 6 4 34 34 H 1.09006 * 110.72363 * 219.44334 * 8 7 6 35 35 H 1.08994 * 110.87650 * 96.23796 * 8 7 6 36 36 H 0.96703 * 113.99969 * 298.54035 * 10 9 8 37 37 H 0.97005 * 119.99553 * 179.97438 * 14 13 11 38 38 H 1.08995 * 110.36831 * 85.33310 * 19 6 4 39 39 H 1.09005 * 110.37045 * 323.00965 * 19 6 4 40 40 H 1.08998 * 109.46919 * 59.99877 * 26 25 24 41 41 H 1.08997 * 109.47220 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.47164 * 300.00122 * 26 25 24 43 43 H 1.08997 * 109.47166 * 59.99764 * 27 25 24 44 44 H 1.08995 * 109.46913 * 180.02562 * 27 25 24 45 45 H 1.08998 * 109.47290 * 300.00388 * 27 25 24 46 46 H 1.09000 * 109.46910 * 60.00070 * 28 25 24 47 47 H 1.09006 * 109.46537 * 179.97438 * 28 25 24 48 48 H 1.08990 * 109.47208 * 299.99733 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.2829 -1.8964 1.1861 6 7 2.2033 -0.0280 2.3800 7 6 1.8324 1.3765 2.6059 8 6 2.1875 1.7145 4.0692 9 6 2.2159 0.3209 4.7507 10 8 0.8987 -0.0998 5.1113 11 6 3.1262 0.3254 5.9518 12 1 3.6247 1.2365 6.2480 13 6 3.3225 -0.8336 6.6723 14 7 4.0118 -0.8030 7.7919 15 14 2.6096 -2.4473 6.0581 16 1 3.6201 -3.1508 5.2280 17 1 2.2417 -3.2990 7.2176 18 1 1.4002 -2.1748 5.2405 19 6 2.7922 -0.5667 3.6195 20 7 2.0183 -0.6906 -1.1963 21 7 1.7891 -1.9184 -1.5195 22 7 2.3771 -2.1702 -2.6367 23 7 2.9975 -1.1158 -3.0409 24 6 2.7952 -0.1650 -2.1616 25 6 3.3285 1.2432 -2.2203 26 6 4.1998 1.5103 -0.9913 27 6 4.1673 1.4184 -3.4879 28 6 2.1600 2.2306 -2.2415 29 1 -0.3633 -1.0240 -0.0863 30 1 -0.3632 0.4373 0.9300 31 1 -0.3633 0.5869 -0.8436 32 1 0.7625 1.5080 2.4443 33 1 2.3936 2.0215 1.9298 34 1 1.4203 2.3468 4.5161 35 1 3.1644 2.1939 4.1309 36 1 0.4594 0.4832 5.7456 37 1 4.1496 -1.6184 8.2990 38 1 3.8787 -0.4855 3.5898 39 1 2.4923 -1.6050 3.7620 40 1 5.0322 0.8068 -0.9763 41 1 4.5859 2.5287 -1.0340 42 1 3.6022 1.3854 -0.0883 43 1 3.5467 1.2281 -4.3635 44 1 4.5534 2.4368 -3.5301 45 1 4.9998 0.7150 -3.4728 46 1 1.5624 2.1057 -1.3385 47 1 2.5458 3.2492 -2.2835 48 1 1.5394 2.0404 -3.1170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:33 Heat of formation + Delta-G solvation = 16.578504 kcal Electronic energy + Delta-G solvation = -31666.501025 eV Core-core repulsion = 27565.747462 eV Total energy + Delta-G solvation = -4100.753564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.41467 -41.52673 -39.43757 -38.48416 -36.90192 -36.30127 -34.54487 -33.33946 -32.46690 -31.60993 -30.25318 -28.52098 -28.32106 -27.41452 -26.38489 -24.98833 -24.75332 -23.53438 -21.63455 -21.27912 -20.68155 -19.40179 -18.83658 -18.41381 -17.94198 -17.16691 -16.94189 -16.72207 -16.41301 -16.18689 -15.57844 -15.37131 -15.07332 -15.00280 -14.75024 -14.35479 -14.29468 -14.07600 -13.90765 -13.77090 -13.59400 -13.44808 -13.26607 -13.13767 -13.07625 -12.95181 -12.76573 -12.71948 -12.70055 -12.47060 -12.30581 -12.18722 -12.17095 -12.05523 -11.87206 -11.80075 -11.27499 -11.06213 -10.97687 -10.82644 -10.25679 -9.77853 -8.45514 -6.55372 0.07908 0.63959 1.07943 1.22376 1.25593 1.34434 1.54877 1.72303 2.26487 2.73617 2.90095 2.93057 3.11623 3.31037 3.40756 3.50071 3.75878 3.79029 3.92549 4.00915 4.17891 4.21129 4.27527 4.35864 4.38720 4.41269 4.53817 4.57348 4.60855 4.68330 4.74429 4.80963 4.85524 4.91659 4.94875 4.94917 4.97053 5.02730 5.07971 5.22320 5.27553 5.30430 5.37817 5.39196 5.51390 6.04755 6.30040 6.59289 6.77634 7.15761 7.33904 7.46118 8.68275 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.003682 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.681441 B = 7603.285294 C = 8063.691183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 H 0.181 0.819 4 C 0.505 3.495 5 O -0.574 6.574 6 N -0.599 5.599 7 C 0.089 3.911 8 C -0.135 4.135 9 C 0.212 3.788 10 O -0.577 6.577 11 C -0.537 4.537 12 H 0.063 0.937 13 C 0.052 3.948 14 N -0.925 5.925 15 Si 0.907 3.093 16 H -0.304 1.304 17 H -0.299 1.299 18 H -0.218 1.218 19 C 0.108 3.892 20 N -0.292 5.292 21 N -0.091 5.091 22 N -0.115 5.115 23 N -0.325 5.325 24 C 0.202 3.798 25 C 0.012 3.988 26 C -0.154 4.154 27 C -0.130 4.130 28 C -0.150 4.150 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.381 0.619 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.043 0.957 41 H 0.120 0.880 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.115 0.885 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 17.320 -18.950 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.198 0.802 4 C 0.292 3.708 5 O -0.453 6.453 6 N -0.332 5.332 7 C -0.032 4.032 8 C -0.173 4.173 9 C 0.171 3.829 10 O -0.385 6.385 11 C -0.575 4.575 12 H 0.081 0.919 13 C -0.149 4.149 14 N -0.564 5.564 15 Si 0.736 3.264 16 H -0.232 1.232 17 H -0.227 1.227 18 H -0.141 1.141 19 C -0.015 4.015 20 N -0.094 5.094 21 N -0.077 5.077 22 N -0.109 5.109 23 N -0.173 5.173 24 C -0.076 4.076 25 C 0.008 3.992 26 C -0.212 4.212 27 C -0.187 4.187 28 C -0.208 4.208 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.133 0.867 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.613 14.736 -19.841 25.584 hybrid contribution 0.319 -1.035 1.389 1.761 sum -6.294 13.701 -18.452 23.829 Atomic orbital electron populations 1.22255 0.87065 1.04926 1.07458 1.22260 1.00284 0.97176 0.77776 0.80206 1.20512 0.78802 0.86878 0.84641 1.90815 1.52731 1.17038 1.84688 1.48622 1.59524 1.14759 1.10277 1.22632 1.02757 0.79214 0.98566 1.23125 1.03955 0.96804 0.93391 1.19954 0.81612 0.91273 0.90016 1.86503 1.29995 1.55803 1.66247 1.21548 1.28293 0.96730 1.10921 0.91867 1.25451 0.93952 1.01455 0.94075 1.70004 1.41601 1.29409 1.15388 0.86587 0.81243 0.80718 0.77874 1.23182 1.22655 1.14098 1.22743 0.97264 0.98011 0.83447 1.48348 1.34291 1.07950 1.18810 1.78995 1.20187 0.98071 1.10415 1.78602 1.08831 1.19383 1.04049 1.74868 1.20320 0.96983 1.25174 1.27044 0.93865 1.00915 0.85806 1.19678 0.97742 0.81857 0.99894 1.22183 0.99013 1.05320 0.94694 1.21771 0.98928 1.03847 0.94201 1.22182 0.95676 0.99775 1.03167 0.92403 0.86277 0.86735 0.87853 0.87185 0.87460 0.89806 0.77000 0.92400 0.91160 0.94345 0.93808 0.86137 0.92768 0.91995 0.87803 0.93435 0.91259 0.86687 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.40 71.98 0.68 -1.84 16 2 C 0.13 2.74 1.74 44.24 0.08 2.82 16 3 H 0.18 2.12 2.84 -2.39 -0.01 2.12 16 4 C 0.51 16.46 7.04 87.65 0.62 17.08 16 5 O -0.57 -25.92 16.04 -3.06 -0.05 -25.97 16 6 N -0.60 -18.32 3.33 -811.82 -2.70 -21.02 16 7 C 0.09 1.65 6.26 86.73 0.54 2.19 16 8 C -0.13 -3.36 6.13 31.78 0.19 -3.17 16 9 C 0.21 8.11 0.69 -10.15 -0.01 8.10 16 10 O -0.58 -21.68 10.35 -148.98 -1.54 -23.22 16 11 C -0.54 -26.35 8.86 25.60 0.23 -26.12 16 12 H 0.06 3.31 8.02 -2.91 -0.02 3.29 16 13 C 0.05 2.86 5.46 84.66 0.46 3.32 16 14 N -0.93 -54.38 13.96 21.45 0.30 -54.08 16 15 Si 0.91 45.84 24.39 68.60 1.67 47.51 16 16 H -0.30 -16.15 7.11 99.48 0.71 -15.45 16 17 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 18 H -0.22 -10.74 4.97 99.48 0.49 -10.25 16 19 C 0.11 4.42 4.94 86.86 0.43 4.85 16 20 N -0.29 -8.04 2.97 -321.37 -0.95 -8.99 16 21 N -0.09 -3.30 12.09 37.02 0.45 -2.85 16 22 N -0.12 -4.29 13.43 37.01 0.50 -3.79 16 23 N -0.33 -10.30 11.71 -50.45 -0.59 -10.89 16 24 C 0.20 4.93 6.40 138.13 0.88 5.82 16 25 C 0.01 0.16 0.75 -52.93 -0.04 0.12 16 26 C -0.15 -1.88 8.31 71.98 0.60 -1.28 16 27 C -0.13 -1.56 8.00 71.98 0.58 -0.99 16 28 C -0.15 -0.88 8.31 71.98 0.60 -0.28 16 29 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 30 H 0.12 1.35 7.27 -2.39 -0.02 1.33 16 31 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.29 7.27 -2.39 -0.02 1.27 16 33 H 0.11 1.09 7.76 -2.38 -0.02 1.07 16 34 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.08 2.11 8.02 -2.39 -0.02 2.09 16 36 H 0.38 11.49 9.11 -74.06 -0.67 10.82 16 37 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 38 H 0.07 3.01 8.03 -2.39 -0.02 2.99 16 39 H 0.04 1.86 4.67 -2.38 -0.01 1.85 16 40 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.05 0.67 5.58 -2.39 -0.01 0.66 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.25 5.58 -2.39 -0.01 0.24 16 47 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 48 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -85.66 373.59 3.03 -82.64 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.11 Total: 10.06 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.84 Total: 10.62 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.00 Total: -101.63 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -1.59 Total: -49.20 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -85.66 3.03 -82.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.215 kcal (2) G-P(sol) polarization free energy of solvation -85.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds