Wall clock time and date at job start Tue Mar 31 2020 20:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47142 * 2 1 4 4 C 1.50704 * 109.46838 * 240.00452 * 2 1 3 5 5 O 1.21278 * 120.00318 * 265.65216 * 4 2 1 6 6 N 1.34779 * 119.99964 * 85.65145 * 4 2 1 7 7 C 1.47421 * 125.65110 * 184.93817 * 6 4 2 8 8 C 1.54916 * 104.83180 * 204.09492 * 7 6 4 9 9 C 1.55158 * 101.57920 * 322.98607 * 8 7 6 10 10 O 1.42905 * 110.72001 * 277.14232 * 9 8 7 11 11 C 1.50699 * 110.71660 * 154.04472 * 9 8 7 12 12 H 1.07995 * 120.00107 * 241.45008 * 11 9 8 13 13 C 1.37883 * 120.00093 * 61.45830 * 11 9 8 14 14 N 1.31517 * 119.99627 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00023 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47417 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47413 * 119.99735 * 15 13 11 18 18 H 1.48504 * 109.47088 * 239.99684 * 15 13 11 19 19 C 1.47022 * 125.64624 * 4.62790 * 6 4 2 20 20 N 1.46501 * 109.47329 * 120.00900 * 2 1 3 21 21 N 1.29010 * 126.44130 * 60.02170 * 20 2 1 22 22 N 1.28741 * 108.81013 * 179.73998 * 21 20 2 23 23 N 1.28838 * 109.39482 * 359.97438 * 22 21 20 24 24 C 1.31066 * 107.99172 * 0.02562 * 23 22 21 25 25 C 1.50699 * 126.65773 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47245 * 239.97208 * 25 24 23 27 27 C 1.53000 * 109.47539 * 359.97400 * 25 24 23 28 28 C 1.53003 * 109.47427 * 119.97587 * 25 24 23 29 29 H 1.08994 * 109.47336 * 54.46572 * 1 2 3 30 30 H 1.09002 * 109.46962 * 174.47105 * 1 2 3 31 31 H 1.09004 * 109.46914 * 294.46369 * 1 2 3 32 32 H 1.09005 * 110.36720 * 322.92601 * 7 6 4 33 33 H 1.08995 * 110.36805 * 85.24989 * 7 6 4 34 34 H 1.08995 * 111.00700 * 81.06003 * 8 7 6 35 35 H 1.09000 * 111.00220 * 204.87494 * 8 7 6 36 36 H 0.96700 * 113.99880 * 298.54703 * 10 9 8 37 37 H 0.97005 * 119.99385 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.88778 * 298.39590 * 19 6 4 39 39 H 1.09000 * 109.88240 * 59.56225 * 19 6 4 40 40 H 1.08999 * 109.46616 * 59.99675 * 26 25 24 41 41 H 1.08991 * 109.47260 * 179.97438 * 26 25 24 42 42 H 1.09006 * 109.46759 * 300.00409 * 26 25 24 43 43 H 1.09004 * 109.46532 * 59.99831 * 27 25 24 44 44 H 1.08991 * 109.47567 * 180.02562 * 27 25 24 45 45 H 1.08999 * 109.46745 * 300.00584 * 27 25 24 46 46 H 1.09006 * 109.47126 * 59.99255 * 28 25 24 47 47 H 1.08991 * 109.47384 * 180.02562 * 28 25 24 48 48 H 1.09004 * 109.46973 * 300.00371 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3095 -1.8899 -1.1792 6 7 2.1734 -0.0347 -2.3882 7 6 2.5536 -0.6229 -3.6855 8 6 3.1689 0.5507 -4.4879 9 6 2.2698 1.7355 -4.0458 10 8 1.0620 1.7658 -4.8091 11 6 3.0102 3.0421 -4.1706 12 1 3.1880 3.6478 -3.2944 13 6 3.4604 3.4644 -5.4035 14 7 3.2441 2.7265 -6.4706 15 14 4.3775 5.0843 -5.5583 16 1 4.4890 5.7198 -4.2208 17 1 5.7363 4.8339 -6.1026 18 1 3.6358 5.9874 -6.4747 19 6 1.9675 1.4099 -2.5678 20 7 2.0184 -0.6908 1.1961 21 7 1.7849 -1.9171 1.5218 22 7 2.3822 -2.1722 2.6334 23 7 3.0054 -1.1189 3.0358 24 6 2.8000 -0.1670 2.1585 25 6 3.3359 1.2403 2.2158 26 6 2.1691 2.2297 2.2424 27 6 4.1803 1.4135 3.4799 28 6 4.2024 1.5068 0.9833 29 1 -0.3634 0.5972 -0.8362 30 1 -0.3633 -1.0229 -0.0990 31 1 -0.3633 0.4256 0.9355 32 1 3.2914 -1.4125 -3.5424 33 1 1.6740 -1.0127 -4.1976 34 1 4.2066 0.7192 -4.2001 35 1 3.0866 0.3761 -5.5607 36 1 1.1996 1.8895 -5.7582 37 1 3.5612 3.0235 -7.3379 38 1 0.9353 1.6693 -2.3327 39 1 2.6477 1.9645 -1.9214 40 1 1.5518 2.0398 3.1204 41 1 2.5567 3.2475 2.2843 42 1 1.5676 2.1062 1.3417 43 1 5.0115 0.7087 3.4609 44 1 4.5675 2.4315 3.5216 45 1 3.5629 1.2237 4.3580 46 1 3.6009 1.3833 0.0826 47 1 4.5904 2.5244 1.0250 48 1 5.0337 0.8019 0.9643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:36 Heat of formation + Delta-G solvation = 30.175096 kcal Electronic energy + Delta-G solvation = -31641.500277 eV Core-core repulsion = 27541.336305 eV Total energy + Delta-G solvation = -4100.163971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.19827 -40.06934 -37.83593 -37.54505 -35.71420 -34.54454 -32.39651 -32.18103 -31.28095 -29.80826 -28.57051 -27.76174 -27.68659 -25.73867 -25.22969 -23.90173 -23.54265 -21.84673 -20.34027 -20.07972 -19.25224 -17.69627 -17.25485 -17.09681 -16.58337 -15.85924 -15.75296 -15.15873 -15.04173 -14.63118 -14.37537 -14.23925 -14.08422 -13.50261 -13.18819 -13.02045 -12.86551 -12.77672 -12.66140 -12.43746 -12.34220 -12.19071 -12.18258 -11.99699 -11.90154 -11.73360 -11.51567 -11.47585 -11.43303 -11.20801 -11.03889 -10.99392 -10.89227 -10.74329 -10.61320 -10.32007 -10.05511 -9.75021 -9.51982 -8.85151 -8.43045 -8.35300 -6.45868 -4.55191 1.27584 1.76596 2.32596 2.54748 3.06722 3.07386 3.17437 3.19102 3.67373 4.02687 4.10584 4.21990 4.31112 4.41213 4.50695 4.71204 4.80932 4.90741 5.13099 5.19664 5.24903 5.33105 5.36371 5.39953 5.43290 5.50242 5.56207 5.59538 5.60777 5.64448 5.73171 5.75944 5.82523 5.84650 5.92704 6.01579 6.05399 6.07790 6.16949 6.29733 6.64910 6.71902 7.09492 7.17395 7.54825 7.65900 7.78933 8.13234 8.46587 8.71717 9.10072 9.20033 10.61676 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003841 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.559540 B = 7288.370089 C = 8415.087924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.140 0.860 4 C 0.514 3.486 5 O -0.522 6.522 6 N -0.600 5.600 7 C 0.104 3.896 8 C -0.135 4.135 9 C 0.251 3.749 10 O -0.586 6.586 11 C -0.540 4.540 12 H 0.065 0.935 13 C 0.075 3.925 14 N -0.892 5.892 15 Si 0.902 3.098 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.103 3.897 20 N -0.289 5.289 21 N -0.059 5.059 22 N -0.089 5.089 23 N -0.303 5.303 24 C 0.191 3.809 25 C 0.013 3.987 26 C -0.152 4.152 27 C -0.130 4.130 28 C -0.154 4.154 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.385 0.615 37 H 0.269 0.731 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 2.582 11.264 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 H 0.157 0.843 4 C 0.299 3.701 5 O -0.398 6.398 6 N -0.333 5.333 7 C -0.018 4.018 8 C -0.174 4.174 9 C 0.211 3.789 10 O -0.395 6.395 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.129 4.129 14 N -0.530 5.530 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.019 4.019 20 N -0.091 5.091 21 N -0.045 5.045 22 N -0.082 5.082 23 N -0.151 5.151 24 C -0.087 4.087 25 C 0.010 3.990 26 C -0.210 4.210 27 C -0.188 4.188 28 C -0.212 4.212 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.103 0.897 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.128 0.445 12.275 12.466 hybrid contribution 0.804 1.732 -1.389 2.362 sum -1.323 2.177 10.885 11.179 Atomic orbital electron populations 1.22109 0.89188 1.05630 1.04713 1.21982 0.98739 0.96936 0.80895 0.84287 1.19601 0.79850 0.87232 0.83460 1.90796 1.50043 1.14969 1.83960 1.48591 1.66104 1.10364 1.08220 1.22489 0.99355 0.97727 0.82192 1.23347 0.99785 0.93862 1.00382 1.19393 0.82311 0.92819 0.84374 1.86103 1.32944 1.96027 1.24429 1.21467 1.36588 1.05201 0.94574 0.91646 1.24979 0.94891 0.97434 0.95550 1.69695 1.46272 1.37708 0.99370 0.86368 0.79351 0.82869 0.78438 1.19551 1.20767 1.20683 1.22392 1.00595 0.78395 1.00515 1.48163 1.33939 1.08774 1.18212 1.79013 1.19026 0.96185 1.10240 1.78618 1.07720 1.18118 1.03742 1.74935 1.19845 0.96623 1.23685 1.26063 0.95715 0.99699 0.87256 1.19276 0.96405 0.84129 0.99237 1.22114 0.96916 0.99317 1.02675 1.21736 0.99711 1.02406 0.94916 1.22127 0.99911 1.03849 0.95291 0.88370 0.89787 0.90288 0.91594 0.91622 0.91365 0.89030 0.76405 0.92054 0.91461 0.90737 0.91499 0.89876 0.92211 0.91443 0.91158 0.91473 0.92348 0.89721 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.39 37.16 0.35 -1.41 16 2 C 0.12 1.62 1.81 -69.08 -0.12 1.49 16 3 H 0.14 1.56 2.82 -51.93 -0.15 1.41 16 4 C 0.51 8.83 7.05 -10.98 -0.08 8.75 16 5 O -0.52 -10.89 16.03 5.56 0.09 -10.80 16 6 N -0.60 -10.34 3.33 -170.51 -0.57 -10.90 16 7 C 0.10 1.89 6.92 -2.53 -0.02 1.87 16 8 C -0.13 -2.69 5.47 -24.58 -0.13 -2.82 16 9 C 0.25 5.20 0.84 -89.93 -0.08 5.13 16 10 O -0.59 -12.83 13.06 -35.23 -0.46 -13.29 16 11 C -0.54 -12.28 8.23 -34.44 -0.28 -12.57 16 12 H 0.07 1.45 7.58 -52.49 -0.40 1.05 16 13 C 0.07 1.74 5.28 -17.82 -0.09 1.64 16 14 N -0.89 -21.06 10.67 55.43 0.59 -20.47 16 15 Si 0.90 18.40 29.54 -169.99 -5.02 13.38 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 C 0.10 1.76 5.49 -3.06 -0.02 1.74 16 20 N -0.29 -4.38 2.96 -52.93 -0.16 -4.54 16 21 N -0.06 -1.07 12.12 60.35 0.73 -0.33 16 22 N -0.09 -1.62 13.43 60.35 0.81 -0.81 16 23 N -0.30 -4.94 11.71 32.70 0.38 -4.56 16 24 C 0.19 2.67 6.40 -155.44 -1.00 1.67 16 25 C 0.01 0.13 0.75 -155.66 -0.12 0.02 16 26 C -0.15 -1.19 8.31 37.16 0.31 -0.88 16 27 C -0.13 -1.13 8.00 37.16 0.30 -0.84 16 28 C -0.15 -1.57 8.31 37.16 0.31 -1.26 16 29 H 0.10 0.97 7.59 -51.93 -0.39 0.57 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.20 7.99 -51.93 -0.42 0.78 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 35 H 0.09 1.93 7.53 -51.93 -0.39 1.54 16 36 H 0.39 8.67 7.46 45.56 0.34 9.01 16 37 H 0.27 6.15 8.31 -40.82 -0.34 5.82 16 38 H 0.07 1.06 7.51 -51.93 -0.39 0.67 16 39 H 0.07 1.16 7.04 -51.93 -0.37 0.80 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.46 5.59 -51.93 -0.29 0.17 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.65 5.17 -51.93 -0.27 0.39 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -28.82 380.47 -5.04 -33.86 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.50 Total: 10.18 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.67 Total: 2.54 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 1.79 Total: -41.61 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.37 Total: -24.09 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.82 -5.04 -33.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.035 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds