Wall clock time and date at job start Tue Mar 31 2020 20:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47142 * 2 1 4 4 C 1.50704 * 109.46838 * 240.00452 * 2 1 3 5 5 O 1.21278 * 120.00318 * 265.65216 * 4 2 1 6 6 N 1.34779 * 119.99964 * 85.65145 * 4 2 1 7 7 C 1.47421 * 125.65110 * 184.93817 * 6 4 2 8 8 C 1.54916 * 104.83180 * 204.09492 * 7 6 4 9 9 C 1.55158 * 101.57920 * 322.98607 * 8 7 6 10 10 O 1.42905 * 110.72001 * 277.14232 * 9 8 7 11 11 C 1.50699 * 110.71660 * 154.04472 * 9 8 7 12 12 H 1.07995 * 120.00107 * 241.45008 * 11 9 8 13 13 C 1.37883 * 120.00093 * 61.45830 * 11 9 8 14 14 N 1.31517 * 119.99627 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00023 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47417 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47413 * 119.99735 * 15 13 11 18 18 H 1.48504 * 109.47088 * 239.99684 * 15 13 11 19 19 C 1.47022 * 125.64624 * 4.62790 * 6 4 2 20 20 N 1.46501 * 109.47329 * 120.00900 * 2 1 3 21 21 N 1.29010 * 126.44130 * 60.02170 * 20 2 1 22 22 N 1.28741 * 108.81013 * 179.73998 * 21 20 2 23 23 N 1.28838 * 109.39482 * 359.97438 * 22 21 20 24 24 C 1.31066 * 107.99172 * 0.02562 * 23 22 21 25 25 C 1.50699 * 126.65773 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47245 * 239.97208 * 25 24 23 27 27 C 1.53000 * 109.47539 * 359.97400 * 25 24 23 28 28 C 1.53003 * 109.47427 * 119.97587 * 25 24 23 29 29 H 1.08994 * 109.47336 * 54.46572 * 1 2 3 30 30 H 1.09002 * 109.46962 * 174.47105 * 1 2 3 31 31 H 1.09004 * 109.46914 * 294.46369 * 1 2 3 32 32 H 1.09005 * 110.36720 * 322.92601 * 7 6 4 33 33 H 1.08995 * 110.36805 * 85.24989 * 7 6 4 34 34 H 1.08995 * 111.00700 * 81.06003 * 8 7 6 35 35 H 1.09000 * 111.00220 * 204.87494 * 8 7 6 36 36 H 0.96700 * 113.99880 * 298.54703 * 10 9 8 37 37 H 0.97005 * 119.99385 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.88778 * 298.39590 * 19 6 4 39 39 H 1.09000 * 109.88240 * 59.56225 * 19 6 4 40 40 H 1.08999 * 109.46616 * 59.99675 * 26 25 24 41 41 H 1.08991 * 109.47260 * 179.97438 * 26 25 24 42 42 H 1.09006 * 109.46759 * 300.00409 * 26 25 24 43 43 H 1.09004 * 109.46532 * 59.99831 * 27 25 24 44 44 H 1.08991 * 109.47567 * 180.02562 * 27 25 24 45 45 H 1.08999 * 109.46745 * 300.00584 * 27 25 24 46 46 H 1.09006 * 109.47126 * 59.99255 * 28 25 24 47 47 H 1.08991 * 109.47384 * 180.02562 * 28 25 24 48 48 H 1.09004 * 109.46973 * 300.00371 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3095 -1.8899 -1.1792 6 7 2.1734 -0.0347 -2.3882 7 6 2.5536 -0.6229 -3.6855 8 6 3.1689 0.5507 -4.4879 9 6 2.2698 1.7355 -4.0458 10 8 1.0620 1.7658 -4.8091 11 6 3.0102 3.0421 -4.1706 12 1 3.1880 3.6478 -3.2944 13 6 3.4604 3.4644 -5.4035 14 7 3.2441 2.7265 -6.4706 15 14 4.3775 5.0843 -5.5583 16 1 4.4890 5.7198 -4.2208 17 1 5.7363 4.8339 -6.1026 18 1 3.6358 5.9874 -6.4747 19 6 1.9675 1.4099 -2.5678 20 7 2.0184 -0.6908 1.1961 21 7 1.7849 -1.9171 1.5218 22 7 2.3822 -2.1722 2.6334 23 7 3.0054 -1.1189 3.0358 24 6 2.8000 -0.1670 2.1585 25 6 3.3359 1.2403 2.2158 26 6 2.1691 2.2297 2.2424 27 6 4.1803 1.4135 3.4799 28 6 4.2024 1.5068 0.9833 29 1 -0.3634 0.5972 -0.8362 30 1 -0.3633 -1.0229 -0.0990 31 1 -0.3633 0.4256 0.9355 32 1 3.2914 -1.4125 -3.5424 33 1 1.6740 -1.0127 -4.1976 34 1 4.2066 0.7192 -4.2001 35 1 3.0866 0.3761 -5.5607 36 1 1.1996 1.8895 -5.7582 37 1 3.5612 3.0235 -7.3379 38 1 0.9353 1.6693 -2.3327 39 1 2.6477 1.9645 -1.9214 40 1 1.5518 2.0398 3.1204 41 1 2.5567 3.2475 2.2843 42 1 1.5676 2.1062 1.3417 43 1 5.0115 0.7087 3.4609 44 1 4.5675 2.4315 3.5216 45 1 3.5629 1.2237 4.3580 46 1 3.6009 1.3833 0.0826 47 1 4.5904 2.5244 1.0250 48 1 5.0337 0.8019 0.9643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:35 Heat of formation + Delta-G solvation = 10.338445 kcal Electronic energy + Delta-G solvation = -31642.360458 eV Core-core repulsion = 27541.336305 eV Total energy + Delta-G solvation = -4101.024153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.39757 -41.46696 -39.28072 -38.48236 -36.90231 -36.13274 -34.14016 -33.37132 -32.45892 -31.25549 -30.08389 -28.51116 -28.33329 -27.08827 -26.56609 -25.03547 -24.87826 -23.16595 -21.77863 -21.23257 -20.51553 -19.23453 -18.56666 -18.40121 -17.85154 -17.13676 -16.87099 -16.74069 -16.40870 -15.91396 -15.80341 -15.19831 -15.04691 -14.78415 -14.55842 -14.20689 -14.04001 -13.82854 -13.76555 -13.62238 -13.46838 -13.27743 -13.17814 -13.09593 -13.04773 -12.94059 -12.74005 -12.70529 -12.66185 -12.39411 -12.36891 -12.19283 -12.17967 -12.04972 -11.98743 -11.80148 -11.35357 -11.18332 -10.93790 -10.59141 -10.10712 -9.80114 -8.19477 -6.33302 0.09708 0.64275 1.09353 1.23180 1.46347 1.52737 1.59767 1.75471 2.43110 2.74073 2.90644 3.06204 3.13166 3.33365 3.42114 3.77582 3.78217 3.92348 4.00401 4.02701 4.15285 4.23061 4.29456 4.36058 4.37868 4.51430 4.56276 4.56821 4.64131 4.68436 4.79391 4.80510 4.84071 4.91651 4.94346 4.94815 5.04938 5.11717 5.15564 5.22238 5.28075 5.38769 5.43160 5.51721 5.81047 6.06865 6.29140 6.72733 6.75897 7.35095 7.43670 7.47915 8.86544 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003841 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.559540 B = 7288.370089 C = 8415.087924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 H 0.168 0.832 4 C 0.514 3.486 5 O -0.564 6.564 6 N -0.597 5.597 7 C 0.109 3.891 8 C -0.126 4.126 9 C 0.237 3.763 10 O -0.590 6.590 11 C -0.551 4.551 12 H 0.072 0.928 13 C 0.035 3.965 14 N -0.911 5.911 15 Si 0.954 3.046 16 H -0.261 1.261 17 H -0.288 1.288 18 H -0.286 1.286 19 C 0.109 3.891 20 N -0.290 5.290 21 N -0.086 5.086 22 N -0.113 5.113 23 N -0.322 5.322 24 C 0.202 3.798 25 C 0.012 3.988 26 C -0.152 4.152 27 C -0.128 4.128 28 C -0.154 4.154 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.379 0.621 37 H 0.268 0.732 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.113 0.887 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 5.324 12.581 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.185 0.815 4 C 0.300 3.700 5 O -0.443 6.443 6 N -0.329 5.329 7 C -0.013 4.013 8 C -0.165 4.165 9 C 0.197 3.803 10 O -0.399 6.399 11 C -0.589 4.589 12 H 0.091 0.909 13 C -0.167 4.167 14 N -0.551 5.551 15 Si 0.781 3.219 16 H -0.185 1.185 17 H -0.214 1.214 18 H -0.212 1.212 19 C -0.013 4.013 20 N -0.092 5.092 21 N -0.072 5.072 22 N -0.106 5.106 23 N -0.170 5.170 24 C -0.076 4.076 25 C 0.009 3.991 26 C -0.210 4.210 27 C -0.186 4.186 28 C -0.212 4.212 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.132 0.868 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.434 3.204 13.606 14.189 hybrid contribution 0.939 0.887 -1.837 2.246 sum -1.496 4.091 11.769 12.550 Atomic orbital electron populations 1.22196 0.87134 1.05215 1.06896 1.22202 1.00238 0.97118 0.78446 0.81493 1.20199 0.78816 0.86828 0.84182 1.90783 1.51840 1.16990 1.84683 1.48565 1.65885 1.10517 1.07962 1.22327 0.99173 0.97012 0.82780 1.23141 0.99173 0.94605 0.99533 1.19589 0.82023 0.92334 0.86334 1.86098 1.33609 1.96026 1.24118 1.21805 1.36408 1.05966 0.94740 0.90937 1.25597 0.95732 0.99731 0.95613 1.69785 1.47016 1.38730 0.99538 0.85560 0.77831 0.80048 0.78483 1.18529 1.21446 1.21191 1.22377 1.02443 0.78110 0.98342 1.48298 1.34015 1.08181 1.18700 1.78957 1.19993 0.97794 1.10486 1.78581 1.08539 1.19245 1.04242 1.74877 1.20409 0.96884 1.24837 1.26906 0.93990 1.00753 0.85967 1.19613 0.97510 0.82163 0.99826 1.22181 0.95967 0.99834 1.03022 1.21760 0.98938 1.03808 0.94072 1.22171 0.99196 1.05162 0.94690 0.86564 0.91516 0.87696 0.91955 0.91598 0.92507 0.90759 0.77087 0.92304 0.89402 0.88617 0.91202 0.87140 0.91850 0.93010 0.88140 0.91750 0.93348 0.86805 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.39 71.98 0.68 -2.38 16 2 C 0.12 3.08 1.81 44.25 0.08 3.16 16 3 H 0.17 3.14 2.82 -2.39 -0.01 3.13 16 4 C 0.51 17.07 7.05 87.66 0.62 17.69 16 5 O -0.56 -23.71 16.03 -3.02 -0.05 -23.76 16 6 N -0.60 -19.72 3.33 -811.77 -2.70 -22.42 16 7 C 0.11 3.96 6.92 86.86 0.60 4.56 16 8 C -0.13 -5.00 5.47 31.99 0.18 -4.83 16 9 C 0.24 9.50 0.84 -10.35 -0.01 9.49 16 10 O -0.59 -25.29 13.06 -148.98 -1.95 -27.23 16 11 C -0.55 -24.10 8.23 25.60 0.21 -23.89 16 12 H 0.07 3.00 7.58 -2.91 -0.02 2.98 16 13 C 0.03 1.56 5.28 84.66 0.45 2.01 16 14 N -0.91 -42.96 10.67 21.45 0.23 -42.73 16 15 Si 0.95 36.72 29.54 68.60 2.03 38.75 16 16 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 17 H -0.29 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 19 C 0.11 3.41 5.49 86.73 0.48 3.89 16 20 N -0.29 -8.46 2.96 -321.37 -0.95 -9.41 16 21 N -0.09 -3.12 12.12 37.02 0.45 -2.67 16 22 N -0.11 -4.17 13.43 37.01 0.50 -3.67 16 23 N -0.32 -10.42 11.71 -50.46 -0.59 -11.02 16 24 C 0.20 5.36 6.40 138.14 0.88 6.24 16 25 C 0.01 0.21 0.75 -52.93 -0.04 0.17 16 26 C -0.15 -1.72 8.31 71.98 0.60 -1.12 16 27 C -0.13 -1.89 8.00 71.98 0.58 -1.32 16 28 C -0.15 -2.68 8.31 71.98 0.60 -2.08 16 29 H 0.12 1.86 7.59 -2.39 -0.02 1.84 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 2.29 7.99 -2.38 -0.02 2.27 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 35 H 0.07 3.20 7.53 -2.39 -0.02 3.18 16 36 H 0.38 17.08 7.46 -74.06 -0.55 16.53 16 37 H 0.27 12.25 8.31 -92.70 -0.77 11.48 16 38 H 0.09 2.43 7.51 -2.39 -0.02 2.41 16 39 H 0.10 2.62 7.04 -2.39 -0.02 2.61 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.67 5.59 -2.38 -0.01 0.66 16 43 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 0.93 5.17 -2.38 -0.01 0.91 16 47 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -63.46 380.47 3.30 -60.16 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.44 Total: 32.40 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.89 Total: 11.61 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.07 Total: -91.92 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -1.99 Total: -50.99 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -63.46 3.30 -60.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.495 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds