Wall clock time and date at job start Tue Mar 31 2020 20:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46962 * 2 1 4 4 C 1.34943 * 126.03955 * 124.97636 * 3 2 1 5 5 C 1.35315 * 107.74832 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.03886 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47244 * 263.95151 * 6 5 4 8 8 C 1.34780 * 119.99842 * 276.04253 * 7 6 5 9 9 O 1.21586 * 119.99725 * 354.98505 * 8 7 6 10 10 N 1.34777 * 119.99557 * 174.98279 * 8 7 6 11 11 C 1.46505 * 119.99643 * 184.99874 * 10 8 7 12 12 C 1.50693 * 109.47149 * 180.02562 * 11 10 8 13 13 O 1.21300 * 119.99848 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00219 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00105 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99523 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00103 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00017 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00224 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47038 * 60.00455 * 19 17 15 21 21 H 1.48507 * 109.47347 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47236 * 300.00459 * 19 17 15 23 23 C 1.46495 * 120.00091 * 96.04940 * 7 6 5 24 24 C 1.53002 * 109.46786 * 305.31637 * 23 7 6 25 25 C 1.52998 * 109.47311 * 65.31484 * 23 7 6 26 26 C 1.39864 * 107.91992 * 359.97438 * 5 4 3 27 27 N 1.30838 * 108.20378 * 359.97438 * 26 5 4 28 28 H 1.09002 * 109.46787 * 60.00234 * 1 2 3 29 29 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47509 * 299.99780 * 1 2 3 31 31 H 1.08996 * 109.47509 * 240.00220 * 2 1 3 32 32 H 1.08991 * 109.47207 * 120.00088 * 2 1 3 33 33 H 1.08002 * 126.12554 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.47016 * 23.95524 * 6 5 4 35 35 H 1.09000 * 109.47112 * 143.94994 * 6 5 4 36 36 H 0.96995 * 120.00577 * 5.00353 * 10 8 7 37 37 H 1.09001 * 109.47040 * 299.99955 * 11 10 8 38 38 H 1.09000 * 109.46712 * 60.00070 * 11 10 8 39 39 H 0.96997 * 119.99915 * 359.97438 * 14 12 11 40 40 H 0.97001 * 120.00159 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.47312 * 185.32132 * 23 7 6 42 42 H 1.09008 * 109.47218 * 65.64974 * 24 23 7 43 43 H 1.08996 * 109.47164 * 185.64694 * 24 23 7 44 44 H 1.08997 * 109.47386 * 305.64791 * 24 23 7 45 45 H 1.09003 * 109.47183 * 60.00510 * 25 23 7 46 46 H 1.09009 * 109.47014 * 180.02562 * 25 23 7 47 47 H 1.09000 * 109.47356 * 299.99800 * 25 23 7 48 48 H 1.08001 * 125.89977 * 180.25727 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8726 1.9213 0.8941 5 6 3.0718 3.2136 0.5458 6 6 3.9554 4.1998 1.2654 7 7 3.1454 4.9977 2.1892 8 6 2.4845 6.0833 1.7407 9 8 2.6324 6.4535 0.5921 10 7 1.6597 6.7585 2.5656 11 6 0.8581 7.8712 2.0501 12 6 0.0285 8.4520 3.1660 13 8 0.0995 7.9823 4.2821 14 7 -0.7930 9.4926 2.9237 15 6 -1.5482 10.0206 3.9389 16 1 -1.4843 9.6029 4.9328 17 6 -2.3947 11.0937 3.6893 18 7 -2.4719 11.6022 2.4800 19 14 -3.4230 11.8136 5.0726 20 1 -2.5278 12.3062 6.1502 21 1 -4.2360 12.9412 4.5499 22 1 -4.3232 10.7657 5.6173 23 6 3.0538 4.6156 3.6005 24 6 2.5876 3.1622 3.7061 25 6 4.4278 4.7595 4.2580 26 6 2.3136 3.4720 -0.6008 27 7 1.6823 2.3741 -0.9294 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 3.3177 1.4131 1.7367 34 1 4.7203 3.6613 1.8249 35 1 4.4322 4.8578 0.5390 36 1 1.5968 6.5078 3.5004 37 1 1.5189 8.6406 1.6507 38 1 0.2014 7.5098 1.2588 39 1 -0.8500 9.8679 2.0311 40 1 -3.0632 12.3512 2.3056 41 1 2.3390 5.2641 4.1069 42 1 3.3503 2.5047 3.2886 43 1 2.4231 2.9086 4.7533 44 1 1.6575 3.0377 3.1517 45 1 4.7600 5.7950 4.1828 46 1 4.3598 4.4748 5.3081 47 1 5.1427 4.1109 3.7517 48 1 2.2620 4.4138 -1.1269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593410242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:26 Heat of formation + Delta-G solvation = 18.952516 kcal Electronic energy + Delta-G solvation = -29641.921023 eV Core-core repulsion = 25541.270405 eV Total energy + Delta-G solvation = -4100.650619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37085 -40.00773 -38.23906 -36.61190 -34.82609 -34.35530 -33.61389 -32.07164 -31.35244 -30.70716 -29.93503 -27.67843 -27.27941 -25.59479 -24.26642 -23.81651 -21.97849 -20.97488 -20.46673 -19.58430 -19.08882 -18.30422 -17.77317 -17.21050 -16.03956 -15.71860 -15.56877 -15.42938 -14.68660 -14.50604 -14.47838 -14.34114 -14.23655 -14.02272 -13.93677 -13.44886 -13.30308 -13.19025 -13.10942 -12.55742 -12.42489 -12.32414 -12.27636 -12.14543 -11.89792 -11.69657 -11.60073 -11.58338 -11.39942 -11.08066 -10.99499 -10.52806 -10.48671 -10.28434 -9.83495 -9.59397 -9.44762 -8.85262 -8.58330 -8.52676 -8.31551 -8.06287 -6.47998 -3.89995 1.78613 2.39153 2.56849 3.14995 3.15798 3.23262 3.27492 3.50670 3.79750 4.05354 4.18989 4.24634 4.56064 4.63674 4.70746 4.82866 4.90170 4.93112 4.98610 5.06952 5.12014 5.20660 5.21517 5.41118 5.43927 5.46828 5.55295 5.62050 5.73089 5.76889 5.79702 5.86008 5.96459 5.98528 6.07200 6.07708 6.12929 6.14142 6.65415 6.67510 6.86149 6.92391 7.16340 7.48784 7.68601 7.95909 8.28295 8.49276 8.90964 9.07994 9.43576 9.91671 10.68930 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.002499 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.418502 B =11201.335855 C =11852.195829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 N -0.377 5.377 4 C 0.061 3.939 5 C -0.251 4.251 6 C 0.213 3.787 7 N -0.621 5.621 8 C 0.710 3.290 9 O -0.593 6.593 10 N -0.727 5.727 11 C 0.128 3.872 12 C 0.430 3.570 13 O -0.599 6.599 14 N -0.550 5.550 15 C -0.305 4.305 16 H 0.104 0.896 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.130 3.870 24 C -0.158 4.158 25 C -0.162 4.162 26 C 0.075 3.925 27 N -0.301 5.301 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.612 -22.112 -1.845 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 N -0.159 5.159 4 C -0.086 4.086 5 C -0.263 4.263 6 C 0.089 3.911 7 N -0.358 5.358 8 C 0.411 3.589 9 O -0.472 6.472 10 N -0.387 5.387 11 C 0.000 4.000 12 C 0.215 3.785 13 O -0.486 6.486 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.122 0.878 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.026 3.974 24 C -0.216 4.216 25 C -0.220 4.220 26 C -0.112 4.112 27 N -0.121 5.121 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.186 0.814 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.245 0.755 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 11.738 -22.662 -2.843 25.679 hybrid contribution -0.195 0.859 1.207 1.494 sum 11.542 -21.803 -1.636 24.724 Atomic orbital electron populations 1.22052 0.93791 1.02692 1.03832 1.21622 0.96134 0.77748 1.03366 1.48695 1.35674 1.10144 1.21410 1.22362 0.95628 0.94794 0.95792 1.20483 1.09549 0.94852 1.01460 1.19339 0.89957 0.90704 0.91109 1.47270 1.52189 1.27632 1.08687 1.15771 0.78871 0.79705 0.84544 1.90863 1.68784 1.69828 1.17702 1.45019 1.44810 1.35265 1.13620 1.20763 0.94189 0.89176 0.95921 1.19794 0.85001 0.84236 0.89428 1.90480 1.70422 1.63574 1.24130 1.41781 1.36230 1.27787 1.12643 1.19667 1.18755 1.12847 0.92144 0.87788 1.25313 0.98031 0.96780 0.97599 1.69609 1.38609 1.25260 1.20054 0.85883 0.79437 0.78390 0.80302 1.19795 1.20869 1.19826 1.21086 0.97821 0.96807 0.81718 1.22236 1.01652 0.95698 1.02024 1.22187 0.96575 1.02653 1.00624 1.23952 0.94256 0.97053 0.95928 1.77372 1.23901 0.97154 1.13700 0.91022 0.90854 0.92021 0.90026 0.88968 0.81417 0.90275 0.89379 0.75522 0.90010 0.90236 0.77013 0.91564 0.89259 0.92393 0.91720 0.92118 0.92002 0.91475 0.92261 0.79803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.10 37.16 0.38 -0.83 16 2 C 0.13 0.90 7.23 -4.04 -0.03 0.87 16 3 N -0.38 -3.98 3.68 -61.37 -0.23 -4.20 16 4 C 0.06 0.58 9.71 -17.23 -0.17 0.41 16 5 C -0.25 -2.88 5.25 -105.05 -0.55 -3.43 16 6 C 0.21 2.29 5.07 -5.19 -0.03 2.27 16 7 N -0.62 -7.83 2.37 -173.17 -0.41 -8.24 16 8 C 0.71 11.83 8.21 -86.91 -0.71 11.12 16 9 O -0.59 -11.35 15.89 5.29 0.08 -11.27 16 10 N -0.73 -12.82 5.43 -66.41 -0.36 -13.18 16 11 C 0.13 2.47 6.16 -5.19 -0.03 2.43 16 12 C 0.43 10.05 7.85 -10.99 -0.09 9.97 16 13 O -0.60 -15.49 15.24 5.54 0.08 -15.40 16 14 N -0.55 -13.85 5.29 -10.96 -0.06 -13.90 16 15 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 16 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 19 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 C 0.13 1.36 3.22 -67.93 -0.22 1.14 16 24 C -0.16 -1.35 7.86 37.16 0.29 -1.06 16 25 C -0.16 -1.37 9.26 37.16 0.34 -1.02 16 26 C 0.07 1.03 11.96 -17.37 -0.21 0.82 16 27 N -0.30 -4.16 12.42 30.62 0.38 -3.78 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.17 1.02 6.65 -52.49 -0.35 0.67 16 34 H 0.08 0.62 6.55 -51.93 -0.34 0.28 16 35 H 0.09 1.06 7.54 -51.93 -0.39 0.67 16 36 H 0.40 7.04 4.82 -40.82 -0.20 6.85 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.40 9.63 7.90 -40.82 -0.32 9.31 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.09 1.09 5.46 -51.93 -0.28 0.81 16 42 H 0.06 0.39 5.51 -51.92 -0.29 0.10 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.65 7.93 -51.93 -0.41 0.23 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 47 H 0.06 0.42 6.92 -51.93 -0.36 0.06 16 48 H 0.19 2.65 7.94 -52.49 -0.42 2.24 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -33.54 395.35 -7.20 -40.74 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -7.09 Total: 16.26 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -1.26 Total: 14.78 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: 0.05 Total: -66.76 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.17 Total: -26.67 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.54 -7.20 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593410242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.694 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds