Wall clock time and date at job start Tue Mar 31 2020 20:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47404 * 2 1 4 4 C 1.50695 * 109.47182 * 239.99695 * 2 1 3 5 5 O 1.21286 * 119.99956 * 253.92439 * 4 2 1 6 6 N 1.34777 * 120.00433 * 73.92583 * 4 2 1 7 7 C 1.46504 * 119.99450 * 3.69426 * 6 4 2 8 8 C 1.46498 * 120.00511 * 183.70033 * 6 4 2 9 9 C 1.50699 * 109.46905 * 89.99553 * 8 6 4 10 10 H 1.08000 * 120.00167 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99729 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99607 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00028 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47050 * 89.99807 * 13 11 9 15 15 H 1.48501 * 109.47221 * 209.99352 * 13 11 9 16 16 H 1.48493 * 109.47118 * 329.99612 * 13 11 9 17 17 N 1.46504 * 109.47032 * 119.99722 * 2 1 3 18 18 C 1.35311 * 125.86713 * 35.00056 * 17 2 1 19 19 C 1.35349 * 106.17607 * 180.02562 * 18 17 2 20 20 C 1.50697 * 126.75621 * 180.02562 * 19 18 17 21 21 N 1.46897 * 109.47524 * 94.99785 * 20 19 18 22 22 C 1.47017 * 110.99705 * 66.31947 * 21 20 19 23 23 C 1.53096 * 109.25372 * 182.35356 * 22 21 20 24 24 O 1.43016 * 109.29610 * 303.21585 * 23 22 21 25 25 C 1.43015 * 113.73506 * 58.65197 * 24 23 22 26 26 C 1.47011 * 111.00491 * 190.00412 * 21 20 19 27 27 N 1.33771 * 106.49619 * 0.26196 * 19 18 17 28 28 N 1.28637 * 108.88559 * 359.56442 * 27 19 18 29 29 H 1.09001 * 109.46968 * 55.78145 * 1 2 3 30 30 H 1.09000 * 109.47157 * 175.78368 * 1 2 3 31 31 H 1.09004 * 109.47249 * 295.78653 * 1 2 3 32 32 H 1.09005 * 109.46398 * 84.70163 * 7 6 4 33 33 H 1.08997 * 109.47401 * 204.69401 * 7 6 4 34 34 H 1.08994 * 109.47548 * 324.70379 * 7 6 4 35 35 H 1.08993 * 109.47236 * 209.99688 * 8 6 4 36 36 H 1.08997 * 109.46579 * 329.99895 * 8 6 4 37 37 H 0.97004 * 119.99725 * 180.02562 * 12 11 9 38 38 H 1.07998 * 126.91663 * 359.97438 * 18 17 2 39 39 H 1.09008 * 109.46779 * 334.99784 * 20 19 18 40 40 H 1.09005 * 109.47122 * 214.99996 * 20 19 18 41 41 H 1.08996 * 109.47188 * 62.43947 * 22 21 20 42 42 H 1.09001 * 109.54884 * 302.31078 * 22 21 20 43 43 H 1.09004 * 109.50323 * 183.26014 * 23 22 21 44 44 H 1.09000 * 109.50481 * 63.17898 * 23 22 21 45 45 H 1.09006 * 109.50956 * 61.25749 * 25 24 23 46 46 H 1.08994 * 109.50739 * 181.35224 * 25 24 23 47 47 H 1.09000 * 109.50264 * 57.66872 * 26 21 20 48 48 H 1.09006 * 109.50104 * 297.54453 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5087 -1.8219 -1.1368 6 7 1.9523 -0.1108 -2.4348 7 6 1.4521 1.2623 -2.5375 8 6 2.3653 -0.8321 -3.6411 9 6 1.1840 -1.5731 -4.2125 10 1 0.2217 -1.5124 -3.7260 11 6 1.3315 -2.3276 -5.3571 12 7 0.3007 -2.9746 -5.8554 13 14 2.9957 -2.4319 -6.1990 14 1 3.7606 -3.5772 -5.6434 15 1 2.8010 -2.6279 -7.6580 16 1 3.7487 -1.1736 -5.9647 17 7 2.0183 -0.6906 1.1962 18 6 1.4357 -1.7587 1.7884 19 6 2.2124 -2.0702 2.8522 20 6 1.9879 -3.1898 3.8356 21 7 2.7617 -4.3678 3.4216 22 6 4.2058 -4.1098 3.5177 23 6 4.9723 -5.3391 3.0225 24 8 4.5739 -6.4826 3.7835 25 6 3.1734 -6.7629 3.7110 26 6 2.3886 -5.5485 4.2141 27 7 3.2157 -1.1855 2.8621 28 7 3.0749 -0.3852 1.8649 29 1 -0.3633 0.5779 -0.8498 30 1 -0.3633 -1.0249 -0.0756 31 1 -0.3634 0.4471 0.9254 32 1 2.2687 1.9610 -2.3551 33 1 1.0483 1.4282 -3.5362 34 1 0.6674 1.4195 -1.7975 35 1 2.7402 -0.1223 -4.3784 36 1 3.1521 -1.5427 -3.3880 37 1 0.4046 -3.5058 -6.6605 38 1 0.5322 -2.2610 1.4757 39 1 0.9278 -3.4425 3.8626 40 1 2.3112 -2.8728 4.8272 41 1 4.4709 -3.9094 4.5557 42 1 4.4641 -3.2478 2.9026 43 1 6.0428 -5.1747 3.1460 44 1 4.7490 -5.5072 1.9689 45 1 2.8970 -6.9721 2.6775 46 1 2.9429 -7.6287 4.3317 47 1 1.3202 -5.7357 4.1072 48 1 2.6247 -5.3718 5.2635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603191166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:02 Heat of formation + Delta-G solvation = 46.477649 kcal Electronic energy + Delta-G solvation = -30086.494821 eV Core-core repulsion = 25987.037781 eV Total energy + Delta-G solvation = -4099.457039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.21649 -39.67913 -39.47228 -36.22237 -35.29860 -35.06937 -32.68629 -31.88532 -31.23134 -30.77823 -28.52690 -28.28626 -26.45310 -25.22860 -24.52220 -24.10595 -23.07314 -21.42774 -21.09885 -20.44774 -19.07446 -17.28239 -17.19419 -17.05030 -16.69042 -16.23100 -15.67278 -15.35429 -15.28037 -15.19546 -15.05968 -14.85171 -14.36568 -14.19260 -14.00491 -13.71341 -13.36094 -13.24040 -12.68478 -12.51193 -12.47379 -12.36474 -12.33559 -12.01626 -11.91491 -11.66365 -11.56899 -11.48894 -11.22268 -11.05576 -10.76410 -10.70348 -10.63330 -10.30290 -10.26609 -9.80429 -9.67765 -9.28848 -9.05812 -8.69892 -8.49345 -7.97059 -6.20423 -4.20729 1.67858 2.27912 2.51438 2.88430 3.22083 3.27934 3.30997 3.54107 3.70228 3.84104 4.26915 4.30006 4.46271 4.55054 4.58520 4.67673 4.81474 4.87918 5.00256 5.04905 5.10330 5.12973 5.13594 5.21436 5.30514 5.36989 5.41742 5.42214 5.54052 5.56645 5.61826 5.65539 5.73051 5.84435 5.87576 5.93437 6.02831 6.16870 6.46238 6.64458 6.77088 6.78431 6.82115 7.03119 7.06019 7.46084 7.89684 8.30426 8.56817 8.62064 8.80465 9.39059 10.92464 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003219 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.089802 B = 8696.598827 C =10243.882483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.123 3.877 3 H 0.130 0.870 4 C 0.501 3.499 5 O -0.519 6.519 6 N -0.587 5.587 7 C 0.069 3.931 8 C 0.216 3.784 9 C -0.535 4.535 10 H 0.075 0.925 11 C 0.075 3.925 12 N -0.894 5.894 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.266 1.266 17 N -0.269 5.269 18 C -0.001 4.001 19 C -0.029 4.029 20 C 0.148 3.852 21 N -0.533 5.533 22 C 0.021 3.979 23 C 0.063 3.937 24 O -0.388 6.388 25 C 0.063 3.937 26 C 0.020 3.980 27 N -0.267 5.267 28 N -0.085 5.085 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.186 0.814 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 3.386 18.345 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.148 0.852 4 C 0.283 3.717 5 O -0.394 6.394 6 N -0.319 5.319 7 C -0.075 4.075 8 C 0.096 3.904 9 C -0.573 4.573 10 H 0.093 0.907 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.190 1.190 17 N -0.061 5.061 18 C -0.153 4.153 19 C -0.167 4.167 20 C 0.019 3.981 21 N -0.259 5.259 22 C -0.107 4.107 23 C -0.014 4.014 24 O -0.307 6.307 25 C -0.014 4.014 26 C -0.108 4.108 27 N -0.134 5.134 28 N -0.063 5.063 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.203 0.797 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.174 3.442 17.915 18.280 hybrid contribution -0.295 -0.340 -0.331 0.559 sum 0.879 3.102 17.583 17.877 Atomic orbital electron populations 1.22225 0.89718 1.05412 1.04690 1.21646 0.97434 0.97709 0.81527 0.85189 1.20012 0.80693 0.86769 0.84177 1.90774 1.44420 1.18967 1.85250 1.47756 1.62871 1.14298 1.06955 1.21959 0.98583 0.82716 1.04204 1.19764 0.97087 0.92509 0.81040 1.21258 0.96231 1.29561 1.10250 0.90661 1.24832 0.96643 0.94600 0.96699 1.69883 1.30105 1.30941 1.22238 0.86866 0.84578 0.79396 0.78980 1.19814 1.20894 1.19035 1.46873 1.17410 1.21802 1.20057 1.23186 1.03372 0.92774 0.95957 1.21511 0.95221 1.00080 0.99859 1.20150 0.98567 0.85849 0.93530 1.62123 1.05204 1.03602 1.54939 1.22794 0.87429 0.99622 1.00820 1.22697 0.98824 0.84300 0.95608 1.87956 1.23810 1.47529 1.71397 1.22654 0.80970 0.96176 1.01625 1.22775 1.01005 0.91398 0.95659 1.74948 1.20954 1.03923 1.13594 1.78239 1.03813 1.21890 1.02397 0.88132 0.90148 0.90314 0.93001 0.89629 0.91780 0.94750 0.94372 0.92395 0.79687 0.88962 0.92978 0.93949 0.88716 0.88485 0.92049 0.92048 0.88529 0.89442 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.47 37.16 0.31 -1.36 16 2 C 0.12 1.68 2.82 -69.08 -0.19 1.49 16 3 H 0.13 1.45 7.48 -51.93 -0.39 1.06 16 4 C 0.50 9.51 6.97 -10.99 -0.08 9.43 16 5 O -0.52 -12.44 15.88 5.55 0.09 -12.35 16 6 N -0.59 -11.04 2.86 -182.96 -0.52 -11.57 16 7 C 0.07 0.89 9.86 59.85 0.59 1.48 16 8 C 0.22 5.02 4.23 -5.20 -0.02 5.00 16 9 C -0.53 -14.56 9.94 -34.44 -0.34 -14.90 16 10 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 11 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 13 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 17 N -0.27 -4.14 2.85 -55.89 -0.16 -4.30 16 18 C 0.00 -0.01 10.42 -17.05 -0.18 -0.19 16 19 C -0.03 -0.41 5.97 -82.78 -0.49 -0.90 16 20 C 0.15 1.66 5.53 -4.98 -0.03 1.64 16 21 N -0.53 -6.55 4.72 -235.75 -1.11 -7.66 16 22 C 0.02 0.28 5.46 -3.71 -0.02 0.26 16 23 C 0.06 0.78 7.01 37.21 0.26 1.04 16 24 O -0.39 -4.91 10.83 -35.23 -0.38 -5.29 16 25 C 0.06 0.64 7.01 37.21 0.26 0.90 16 26 C 0.02 0.19 5.65 -3.71 -0.02 0.17 16 27 N -0.27 -4.41 11.40 33.29 0.38 -4.03 16 28 N -0.08 -1.45 13.17 60.35 0.79 -0.65 16 29 H 0.10 0.93 5.80 -51.93 -0.30 0.63 16 30 H 0.08 0.92 7.40 -51.93 -0.38 0.54 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 34 H 0.06 0.63 4.56 -51.93 -0.24 0.39 16 35 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 36 H 0.04 0.97 6.80 -51.93 -0.35 0.62 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.19 2.19 7.42 -52.49 -0.39 1.80 16 39 H 0.09 0.80 8.04 -51.92 -0.42 0.39 16 40 H 0.05 0.56 8.12 -51.93 -0.42 0.13 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.44 6.46 -51.93 -0.34 1.11 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -36.22 385.51 -6.45 -42.67 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.41 Total: 0.76 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.05 Total: 6.08 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.15 Total: -54.01 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.29 Total: -17.64 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.22 -6.45 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603191166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.149 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds