Wall clock time and date at job start Tue Mar 31 2020 20:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47404 * 2 1 4 4 C 1.50695 * 109.47182 * 239.99695 * 2 1 3 5 5 O 1.21286 * 119.99956 * 253.92439 * 4 2 1 6 6 N 1.34777 * 120.00433 * 73.92583 * 4 2 1 7 7 C 1.46504 * 119.99450 * 3.69426 * 6 4 2 8 8 C 1.46498 * 120.00511 * 183.70033 * 6 4 2 9 9 C 1.50699 * 109.46905 * 89.99553 * 8 6 4 10 10 H 1.08000 * 120.00167 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99729 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99607 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00028 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47050 * 89.99807 * 13 11 9 15 15 H 1.48501 * 109.47221 * 209.99352 * 13 11 9 16 16 H 1.48493 * 109.47118 * 329.99612 * 13 11 9 17 17 N 1.46504 * 109.47032 * 119.99722 * 2 1 3 18 18 C 1.35311 * 125.86713 * 35.00056 * 17 2 1 19 19 C 1.35349 * 106.17607 * 180.02562 * 18 17 2 20 20 C 1.50697 * 126.75621 * 180.02562 * 19 18 17 21 21 N 1.46897 * 109.47524 * 94.99785 * 20 19 18 22 22 C 1.47017 * 110.99705 * 66.31947 * 21 20 19 23 23 C 1.53096 * 109.25372 * 182.35356 * 22 21 20 24 24 O 1.43016 * 109.29610 * 303.21585 * 23 22 21 25 25 C 1.43015 * 113.73506 * 58.65197 * 24 23 22 26 26 C 1.47011 * 111.00491 * 190.00412 * 21 20 19 27 27 N 1.33771 * 106.49619 * 0.26196 * 19 18 17 28 28 N 1.28637 * 108.88559 * 359.56442 * 27 19 18 29 29 H 1.09001 * 109.46968 * 55.78145 * 1 2 3 30 30 H 1.09000 * 109.47157 * 175.78368 * 1 2 3 31 31 H 1.09004 * 109.47249 * 295.78653 * 1 2 3 32 32 H 1.09005 * 109.46398 * 84.70163 * 7 6 4 33 33 H 1.08997 * 109.47401 * 204.69401 * 7 6 4 34 34 H 1.08994 * 109.47548 * 324.70379 * 7 6 4 35 35 H 1.08993 * 109.47236 * 209.99688 * 8 6 4 36 36 H 1.08997 * 109.46579 * 329.99895 * 8 6 4 37 37 H 0.97004 * 119.99725 * 180.02562 * 12 11 9 38 38 H 1.07998 * 126.91663 * 359.97438 * 18 17 2 39 39 H 1.09008 * 109.46779 * 334.99784 * 20 19 18 40 40 H 1.09005 * 109.47122 * 214.99996 * 20 19 18 41 41 H 1.08996 * 109.47188 * 62.43947 * 22 21 20 42 42 H 1.09001 * 109.54884 * 302.31078 * 22 21 20 43 43 H 1.09004 * 109.50323 * 183.26014 * 23 22 21 44 44 H 1.09000 * 109.50481 * 63.17898 * 23 22 21 45 45 H 1.09006 * 109.50956 * 61.25749 * 25 24 23 46 46 H 1.08994 * 109.50739 * 181.35224 * 25 24 23 47 47 H 1.09000 * 109.50264 * 57.66872 * 26 21 20 48 48 H 1.09006 * 109.50104 * 297.54453 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5087 -1.8219 -1.1368 6 7 1.9523 -0.1108 -2.4348 7 6 1.4521 1.2623 -2.5375 8 6 2.3653 -0.8321 -3.6411 9 6 1.1840 -1.5731 -4.2125 10 1 0.2217 -1.5124 -3.7260 11 6 1.3315 -2.3276 -5.3571 12 7 0.3007 -2.9746 -5.8554 13 14 2.9957 -2.4319 -6.1990 14 1 3.7606 -3.5772 -5.6434 15 1 2.8010 -2.6279 -7.6580 16 1 3.7487 -1.1736 -5.9647 17 7 2.0183 -0.6906 1.1962 18 6 1.4357 -1.7587 1.7884 19 6 2.2124 -2.0702 2.8522 20 6 1.9879 -3.1898 3.8356 21 7 2.7617 -4.3678 3.4216 22 6 4.2058 -4.1098 3.5177 23 6 4.9723 -5.3391 3.0225 24 8 4.5739 -6.4826 3.7835 25 6 3.1734 -6.7629 3.7110 26 6 2.3886 -5.5485 4.2141 27 7 3.2157 -1.1855 2.8621 28 7 3.0749 -0.3852 1.8649 29 1 -0.3633 0.5779 -0.8498 30 1 -0.3633 -1.0249 -0.0756 31 1 -0.3634 0.4471 0.9254 32 1 2.2687 1.9610 -2.3551 33 1 1.0483 1.4282 -3.5362 34 1 0.6674 1.4195 -1.7975 35 1 2.7402 -0.1223 -4.3784 36 1 3.1521 -1.5427 -3.3880 37 1 0.4046 -3.5058 -6.6605 38 1 0.5322 -2.2610 1.4757 39 1 0.9278 -3.4425 3.8626 40 1 2.3112 -2.8728 4.8272 41 1 4.4709 -3.9094 4.5557 42 1 4.4641 -3.2478 2.9026 43 1 6.0428 -5.1747 3.1460 44 1 4.7490 -5.5072 1.9689 45 1 2.8970 -6.9721 2.6775 46 1 2.9429 -7.6287 4.3317 47 1 1.3202 -5.7357 4.1072 48 1 2.6247 -5.3718 5.2635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603191166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:01 Heat of formation + Delta-G solvation = 17.652051 kcal Electronic energy + Delta-G solvation = -30087.744792 eV Core-core repulsion = 25987.037781 eV Total energy + Delta-G solvation = -4100.707011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.35448 -41.04197 -40.47551 -37.21941 -36.84587 -36.25114 -34.71010 -32.93238 -32.16003 -31.98903 -30.22696 -29.25500 -27.68919 -26.34175 -25.56166 -25.07789 -24.68415 -22.68322 -22.27367 -21.36975 -20.43946 -19.17880 -18.49933 -18.40650 -17.66355 -17.20393 -17.02236 -16.70920 -16.46533 -16.20389 -16.07177 -16.01393 -15.92373 -15.34327 -15.01946 -14.83821 -14.69247 -14.41019 -14.27156 -13.80294 -13.60815 -13.55347 -13.36581 -13.22920 -13.15902 -12.96176 -12.73460 -12.58458 -12.47151 -12.39472 -12.16909 -12.07175 -11.88161 -11.77021 -11.63973 -11.52591 -10.85945 -10.75660 -10.68387 -10.20935 -9.54455 -9.39846 -8.36967 -6.41606 0.51094 1.18404 1.30178 1.34419 1.40744 1.41319 1.47607 2.17427 2.27550 2.80121 2.96622 2.97731 3.25492 3.28377 3.51068 3.61590 3.77013 3.92906 3.97572 4.05754 4.14312 4.19688 4.21786 4.32261 4.44430 4.50879 4.53853 4.56072 4.61248 4.61952 4.69360 4.73155 4.79462 4.81776 4.86918 4.88236 4.89868 4.99592 5.12305 5.13483 5.39993 5.44270 5.55014 5.85345 5.97247 6.12173 6.17748 6.45270 6.59953 7.06733 7.24323 7.45361 8.79055 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003219 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.089802 B = 8696.598827 C =10243.882483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.162 0.838 4 C 0.492 3.508 5 O -0.582 6.582 6 N -0.593 5.593 7 C 0.058 3.942 8 C 0.223 3.777 9 C -0.534 4.534 10 H 0.041 0.959 11 C 0.018 3.982 12 N -0.939 5.939 13 Si 0.937 3.063 14 H -0.282 1.282 15 H -0.274 1.274 16 H -0.239 1.239 17 N -0.272 5.272 18 C -0.007 4.007 19 C -0.030 4.030 20 C 0.150 3.850 21 N -0.552 5.552 22 C 0.029 3.971 23 C 0.065 3.935 24 O -0.401 6.401 25 C 0.056 3.944 26 C 0.023 3.977 27 N -0.287 5.287 28 N -0.113 5.113 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.012 0.988 37 H 0.269 0.731 38 H 0.206 0.794 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.042 0.958 45 H 0.050 0.950 46 H 0.124 0.876 47 H 0.111 0.889 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 4.769 19.560 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.027 3.973 3 H 0.180 0.820 4 C 0.277 3.723 5 O -0.461 6.461 6 N -0.323 5.323 7 C -0.083 4.083 8 C 0.101 3.899 9 C -0.573 4.573 10 H 0.059 0.941 11 C -0.181 4.181 12 N -0.579 5.579 13 Si 0.761 3.239 14 H -0.208 1.208 15 H -0.199 1.199 16 H -0.162 1.162 17 N -0.064 5.064 18 C -0.159 4.159 19 C -0.169 4.169 20 C 0.021 3.979 21 N -0.278 5.278 22 C -0.100 4.100 23 C -0.012 4.012 24 O -0.319 6.319 25 C -0.021 4.021 26 C -0.105 4.105 27 N -0.154 5.154 28 N -0.092 5.092 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.223 0.777 39 H 0.140 0.860 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.127 0.873 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.142 0.858 47 H 0.129 0.871 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.690 4.899 19.143 19.772 hybrid contribution -0.230 -0.809 -0.673 1.077 sum 0.460 4.090 18.470 18.923 Atomic orbital electron populations 1.22293 0.86878 1.05194 1.07085 1.21793 0.99306 0.97904 0.78341 0.82046 1.20955 0.79441 0.86251 0.85621 1.90738 1.47122 1.21864 1.86408 1.47822 1.62622 1.16142 1.05729 1.22349 1.00786 0.79854 1.05272 1.19405 0.94694 0.92626 0.83171 1.21493 0.96200 1.29705 1.09878 0.94118 1.25710 1.00382 0.94334 0.97685 1.70016 1.32473 1.32297 1.23123 0.85867 0.79949 0.80053 0.78023 1.20847 1.19883 1.16247 1.47043 1.17090 1.22165 1.20145 1.23643 1.04014 0.92494 0.95752 1.22041 0.94311 1.00186 1.00359 1.20317 1.00103 0.84674 0.92833 1.62110 1.04666 1.04803 1.56240 1.22627 0.88445 0.98596 1.00314 1.22652 0.99620 0.84394 0.94521 1.87938 1.25424 1.47345 1.71233 1.22890 0.79876 0.97593 1.01713 1.22846 1.02203 0.89811 0.95594 1.74908 1.21863 1.04658 1.13959 1.78174 1.04800 1.22941 1.03246 0.86691 0.91605 0.86941 0.89879 0.90139 0.88245 0.92731 0.96940 0.92238 0.77729 0.85994 0.92311 0.93539 0.91484 0.87299 0.93956 0.93189 0.85788 0.87094 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.47 71.98 0.61 -2.18 16 2 C 0.13 3.34 2.82 44.24 0.12 3.47 16 3 H 0.16 3.04 7.48 -2.39 -0.02 3.02 16 4 C 0.49 18.50 6.97 87.66 0.61 19.11 16 5 O -0.58 -28.69 15.88 -3.05 -0.05 -28.74 16 6 N -0.59 -21.71 2.86 -851.15 -2.43 -24.14 16 7 C 0.06 1.35 9.86 127.77 1.26 2.61 16 8 C 0.22 10.34 4.23 85.63 0.36 10.70 16 9 C -0.53 -29.65 9.94 25.60 0.25 -29.39 16 10 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 11 C 0.02 1.01 5.47 84.65 0.46 1.47 16 12 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 13 Si 0.94 43.49 27.47 68.60 1.88 45.37 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 17 N -0.27 -8.08 2.85 -330.75 -0.94 -9.02 16 18 C -0.01 -0.19 10.42 83.49 0.87 0.68 16 19 C -0.03 -0.85 5.97 41.60 0.25 -0.60 16 20 C 0.15 3.11 5.53 85.56 0.47 3.59 16 21 N -0.55 -13.05 4.72 -899.78 -4.24 -17.30 16 22 C 0.03 0.75 5.46 86.31 0.47 1.22 16 23 C 0.07 1.65 7.01 72.01 0.50 2.16 16 24 O -0.40 -9.91 10.83 -148.98 -1.61 -11.53 16 25 C 0.06 1.07 7.01 72.01 0.50 1.57 16 26 C 0.02 0.39 5.65 86.31 0.49 0.88 16 27 N -0.29 -9.47 11.40 -48.60 -0.55 -10.03 16 28 N -0.11 -3.84 13.17 37.02 0.49 -3.35 16 29 H 0.11 1.71 5.80 -2.39 -0.01 1.70 16 30 H 0.06 1.40 7.40 -2.39 -0.02 1.38 16 31 H 0.11 1.30 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.97 8.03 -2.39 -0.02 1.95 16 34 H 0.10 1.57 4.56 -2.39 -0.01 1.56 16 35 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 36 H 0.01 0.65 6.80 -2.39 -0.02 0.63 16 37 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 38 H 0.21 4.56 7.42 -2.91 -0.02 4.54 16 39 H 0.12 1.77 8.04 -2.38 -0.02 1.75 16 40 H 0.06 1.15 8.12 -2.38 -0.02 1.13 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 2.12 6.46 -2.39 -0.02 2.11 16 43 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.11 1.40 8.09 -2.39 -0.02 1.38 16 48 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -83.62 385.51 0.99 -82.63 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.91 Total: 17.73 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 7.24 Total: 15.29 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -7.38 Total: -120.75 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.66 Total: -40.27 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -83.62 0.99 -82.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603191166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.280 kcal (2) G-P(sol) polarization free energy of solvation -83.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds