Wall clock time and date at job start Tue Mar 31 2020 20:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.46715 * 2 1 4 4 C 1.50698 * 109.47332 * 119.99429 * 2 1 3 5 5 O 1.21279 * 119.99636 * 120.00316 * 4 2 1 6 6 N 1.34776 * 120.00100 * 300.00307 * 4 2 1 7 7 C 1.46501 * 120.00106 * 359.97438 * 6 4 2 8 8 C 1.46507 * 119.99775 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.46817 * 90.00073 * 8 6 4 10 10 H 1.08001 * 120.00121 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99963 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99558 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00176 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47077 * 60.00745 * 13 11 9 15 15 H 1.48499 * 109.47183 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47197 * 300.00140 * 13 11 9 17 17 N 1.46501 * 109.47340 * 240.00131 * 2 1 3 18 18 C 1.35315 * 125.86352 * 325.31937 * 17 2 1 19 19 C 1.35343 * 106.17086 * 180.11846 * 18 17 2 20 20 C 1.50708 * 126.75059 * 179.85161 * 19 18 17 21 21 N 1.46908 * 109.46782 * 94.71348 * 20 19 18 22 22 C 1.47024 * 110.99261 * 66.32417 * 21 20 19 23 23 C 1.53103 * 109.24985 * 182.34870 * 22 21 20 24 24 O 1.43012 * 109.29295 * 303.21723 * 23 22 21 25 25 C 1.43011 * 113.74271 * 58.65008 * 24 23 22 26 26 C 1.47018 * 110.99661 * 189.99956 * 21 20 19 27 27 N 1.33773 * 106.50267 * 359.59354 * 19 18 17 28 28 N 1.28643 * 108.87853 * 0.26291 * 27 19 18 29 29 H 1.08998 * 109.47001 * 300.00233 * 1 2 3 30 30 H 1.09000 * 109.47218 * 60.00410 * 1 2 3 31 31 H 1.08994 * 109.46752 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 89.99608 * 7 6 4 33 33 H 1.09000 * 109.47079 * 210.00118 * 7 6 4 34 34 H 1.08997 * 109.47249 * 330.00044 * 7 6 4 35 35 H 1.08998 * 109.46874 * 210.00161 * 8 6 4 36 36 H 1.09000 * 109.47072 * 329.99794 * 8 6 4 37 37 H 0.97000 * 119.99905 * 179.97438 * 12 11 9 38 38 H 1.07997 * 126.91342 * 359.97438 * 18 17 2 39 39 H 1.09001 * 109.46829 * 334.72076 * 20 19 18 40 40 H 1.08995 * 109.46972 * 214.71352 * 20 19 18 41 41 H 1.08998 * 109.47369 * 62.43595 * 22 21 20 42 42 H 1.08998 * 109.54483 * 302.29802 * 22 21 20 43 43 H 1.09002 * 109.50635 * 183.25881 * 23 22 21 44 44 H 1.09003 * 109.50698 * 63.17493 * 23 22 21 45 45 H 1.08997 * 109.50806 * 61.26171 * 25 24 23 46 46 H 1.08997 * 109.50924 * 181.35636 * 25 24 23 47 47 H 1.08994 * 109.50209 * 57.67478 * 26 21 20 48 48 H 1.08997 * 109.50514 * 297.54292 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6963 1.1192 6 7 1.7068 -0.2497 2.4546 7 6 0.8649 0.9417 2.5889 8 6 2.1948 -0.9406 3.6508 9 6 3.5224 -0.3576 4.0611 10 1 3.9588 0.4474 3.4884 11 6 4.1795 -0.8511 5.1683 12 7 3.6477 -1.8310 5.8659 13 14 5.8255 -0.1288 5.6765 14 1 5.6616 1.3173 5.9717 15 1 6.3201 -0.8290 6.8890 16 1 6.8036 -0.3010 4.5725 17 7 2.0184 -0.6906 -1.1962 18 6 1.4325 -1.7550 -1.7918 19 6 2.2123 -2.0700 -2.8522 20 6 1.9874 -3.1893 -3.8360 21 7 1.2682 -2.6735 -5.0085 22 6 2.0982 -1.7186 -5.7575 23 6 1.2915 -1.1631 -6.9342 24 8 0.8403 -2.2467 -7.7512 25 6 0.0283 -3.1947 -7.0532 26 6 0.8225 -3.7717 -5.8783 27 7 3.2190 -1.1890 -2.8587 28 7 3.0751 -0.3853 -1.8646 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 -0.1831 0.6441 2.6221 33 1 1.1228 1.4669 3.5086 34 1 1.0288 1.6004 1.7361 35 1 1.4767 -0.8151 4.4612 36 1 2.3155 -2.0019 3.4336 37 1 4.1101 -2.1784 6.6446 38 1 0.5264 -2.2542 -1.4820 39 1 1.3968 -3.9746 -3.3641 40 1 2.9488 -3.5962 -4.1494 41 1 2.9870 -2.2260 -6.1327 42 1 2.3951 -0.9005 -5.1013 43 1 1.9213 -0.4988 -7.5259 44 1 0.4319 -0.6092 -6.5569 45 1 -0.8681 -2.7004 -6.6788 46 1 -0.2560 -3.9995 -7.7312 47 1 0.1887 -4.4520 -5.3096 48 1 1.6905 -4.3120 -6.2561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603191168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:04 Heat of formation + Delta-G solvation = 44.548454 kcal Electronic energy + Delta-G solvation = -29677.123889 eV Core-core repulsion = 25577.583194 eV Total energy + Delta-G solvation = -4099.540696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.18259 -39.76195 -39.47139 -36.30331 -35.21188 -35.08987 -32.76714 -31.88649 -31.36518 -30.69341 -28.36233 -27.83018 -26.49911 -25.20025 -24.53227 -24.23189 -23.28899 -21.46868 -21.18573 -20.55940 -19.11568 -17.32782 -17.05287 -16.77789 -16.58807 -16.38355 -15.59535 -15.51513 -15.36780 -15.22268 -15.11900 -14.81163 -14.53445 -14.13172 -13.95723 -13.81969 -13.38053 -13.25017 -12.72569 -12.52082 -12.45307 -12.35229 -12.23906 -11.92682 -11.71133 -11.67227 -11.62881 -11.29043 -11.25577 -11.01079 -10.85613 -10.72644 -10.67746 -10.29093 -10.22177 -9.95427 -9.78113 -9.20875 -9.03711 -8.61856 -8.52760 -7.92505 -6.14663 -4.20116 1.72775 2.31188 2.54842 2.96316 3.26968 3.31802 3.35731 3.55314 3.61572 3.72704 4.28899 4.36321 4.47625 4.55535 4.58730 4.65445 4.73466 4.75160 4.87954 4.96900 5.04382 5.06940 5.18998 5.20289 5.28327 5.30055 5.36381 5.37813 5.40459 5.51458 5.53531 5.59705 5.65407 5.71201 5.74621 5.94406 6.04288 6.19288 6.61517 6.65189 6.69949 6.83320 6.87352 7.22259 7.30647 7.80224 8.06548 8.09531 8.62164 8.66837 8.84701 9.45499 10.93513 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.002288 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.741287 B =12236.229524 C =12592.587062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 H 0.133 0.867 4 C 0.497 3.503 5 O -0.520 6.520 6 N -0.591 5.591 7 C 0.073 3.927 8 C 0.247 3.753 9 C -0.532 4.532 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.265 5.265 18 C -0.012 4.012 19 C -0.026 4.026 20 C 0.146 3.854 21 N -0.534 5.534 22 C 0.018 3.982 23 C 0.065 3.935 24 O -0.388 6.388 25 C 0.065 3.935 26 C 0.017 3.983 27 N -0.268 5.268 28 N -0.075 5.075 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.184 0.816 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.202 1.415 -20.127 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.151 0.849 4 C 0.280 3.720 5 O -0.396 6.396 6 N -0.324 5.324 7 C -0.070 4.070 8 C 0.129 3.871 9 C -0.571 4.571 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 N -0.058 5.058 18 C -0.164 4.164 19 C -0.164 4.164 20 C 0.017 3.983 21 N -0.259 5.259 22 C -0.110 4.110 23 C -0.012 4.012 24 O -0.307 6.307 25 C -0.012 4.012 26 C -0.111 4.111 27 N -0.135 5.135 28 N -0.054 5.054 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.201 0.799 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.952 1.964 -20.098 23.465 hybrid contribution 0.700 -0.624 0.860 1.273 sum -11.252 1.340 -19.237 22.326 Atomic orbital electron populations 1.22409 0.90164 1.04861 1.05430 1.21663 0.97007 0.98123 0.81768 0.84914 1.20018 0.82085 0.85689 0.84253 1.90772 1.36900 1.26229 1.85662 1.48109 1.49375 1.28157 1.06715 1.21927 0.93969 0.87942 1.03205 1.19378 0.94523 0.93651 0.79587 1.21350 1.04841 1.19419 1.11449 0.92426 1.24931 0.98024 0.94869 0.96152 1.69914 1.39120 1.25852 1.18331 0.86532 0.83730 0.79071 0.77992 1.20121 1.21067 1.20091 1.46852 1.17226 1.21701 1.19990 1.23114 1.02693 0.93686 0.96857 1.21478 0.94721 1.01184 0.98988 1.20180 0.97821 0.92043 0.88253 1.62200 1.40644 1.15590 1.07510 1.22827 0.94756 0.97532 0.95910 1.22684 0.98080 0.88868 0.91592 1.87973 1.69433 1.36450 1.36808 1.22643 0.93063 0.92295 0.93235 1.22790 0.99858 0.93537 0.94922 1.74976 1.20947 1.03863 1.13748 1.78284 1.03554 1.21364 1.02232 0.87762 0.90385 0.90682 0.92773 0.90015 0.92238 0.94471 0.93744 0.92515 0.79868 0.88859 0.92708 0.93723 0.88639 0.88493 0.92451 0.92301 0.88511 0.89397 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 8.46 37.16 0.31 -1.24 16 2 C 0.12 1.68 2.85 -69.08 -0.20 1.48 16 3 H 0.13 1.64 7.40 -51.92 -0.38 1.26 16 4 C 0.50 9.64 7.14 -10.99 -0.08 9.56 16 5 O -0.52 -12.89 16.00 5.56 0.09 -12.80 16 6 N -0.59 -11.35 2.86 -182.95 -0.52 -11.88 16 7 C 0.07 0.96 8.80 59.85 0.53 1.48 16 8 C 0.25 6.13 5.16 -5.19 -0.03 6.10 16 9 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 13 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 N -0.27 -4.19 2.75 -55.89 -0.15 -4.34 16 18 C -0.01 -0.16 10.61 -17.05 -0.18 -0.34 16 19 C -0.03 -0.37 5.98 -82.77 -0.49 -0.86 16 20 C 0.15 1.62 5.53 -4.97 -0.03 1.59 16 21 N -0.53 -5.44 4.72 -235.73 -1.11 -6.55 16 22 C 0.02 0.19 5.46 -3.70 -0.02 0.17 16 23 C 0.06 0.61 7.01 37.21 0.26 0.87 16 24 O -0.39 -3.99 10.83 -35.23 -0.38 -4.37 16 25 C 0.06 0.50 7.01 37.21 0.26 0.76 16 26 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 27 N -0.27 -4.62 11.38 33.29 0.38 -4.24 16 28 N -0.08 -1.37 13.16 60.35 0.79 -0.58 16 29 H 0.10 0.80 4.53 -51.93 -0.24 0.56 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 32 H 0.05 0.55 6.95 -51.93 -0.36 0.19 16 33 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.06 0.59 6.01 -51.93 -0.31 0.28 16 35 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.18 1.95 7.30 -52.49 -0.38 1.56 16 39 H 0.09 0.84 8.04 -51.93 -0.42 0.43 16 40 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 1.19 6.45 -51.93 -0.33 0.86 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -36.25 387.07 -6.83 -43.08 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.37 Total: -1.91 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.10 Total: 6.34 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.12 Total: -52.86 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.29 Total: -17.17 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.25 -6.83 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603191168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.626 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds