Wall clock time and date at job start Tue Mar 31 2020 20:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.46715 * 2 1 4 4 C 1.50698 * 109.47332 * 119.99429 * 2 1 3 5 5 O 1.21279 * 119.99636 * 120.00316 * 4 2 1 6 6 N 1.34776 * 120.00100 * 300.00307 * 4 2 1 7 7 C 1.46501 * 120.00106 * 359.97438 * 6 4 2 8 8 C 1.46507 * 119.99775 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.46817 * 90.00073 * 8 6 4 10 10 H 1.08001 * 120.00121 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99963 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99558 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00176 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47077 * 60.00745 * 13 11 9 15 15 H 1.48499 * 109.47183 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47197 * 300.00140 * 13 11 9 17 17 N 1.46501 * 109.47340 * 240.00131 * 2 1 3 18 18 C 1.35315 * 125.86352 * 325.31937 * 17 2 1 19 19 C 1.35343 * 106.17086 * 180.11846 * 18 17 2 20 20 C 1.50708 * 126.75059 * 179.85161 * 19 18 17 21 21 N 1.46908 * 109.46782 * 94.71348 * 20 19 18 22 22 C 1.47024 * 110.99261 * 66.32417 * 21 20 19 23 23 C 1.53103 * 109.24985 * 182.34870 * 22 21 20 24 24 O 1.43012 * 109.29295 * 303.21723 * 23 22 21 25 25 C 1.43011 * 113.74271 * 58.65008 * 24 23 22 26 26 C 1.47018 * 110.99661 * 189.99956 * 21 20 19 27 27 N 1.33773 * 106.50267 * 359.59354 * 19 18 17 28 28 N 1.28643 * 108.87853 * 0.26291 * 27 19 18 29 29 H 1.08998 * 109.47001 * 300.00233 * 1 2 3 30 30 H 1.09000 * 109.47218 * 60.00410 * 1 2 3 31 31 H 1.08994 * 109.46752 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 89.99608 * 7 6 4 33 33 H 1.09000 * 109.47079 * 210.00118 * 7 6 4 34 34 H 1.08997 * 109.47249 * 330.00044 * 7 6 4 35 35 H 1.08998 * 109.46874 * 210.00161 * 8 6 4 36 36 H 1.09000 * 109.47072 * 329.99794 * 8 6 4 37 37 H 0.97000 * 119.99905 * 179.97438 * 12 11 9 38 38 H 1.07997 * 126.91342 * 359.97438 * 18 17 2 39 39 H 1.09001 * 109.46829 * 334.72076 * 20 19 18 40 40 H 1.08995 * 109.46972 * 214.71352 * 20 19 18 41 41 H 1.08998 * 109.47369 * 62.43595 * 22 21 20 42 42 H 1.08998 * 109.54483 * 302.29802 * 22 21 20 43 43 H 1.09002 * 109.50635 * 183.25881 * 23 22 21 44 44 H 1.09003 * 109.50698 * 63.17493 * 23 22 21 45 45 H 1.08997 * 109.50806 * 61.26171 * 25 24 23 46 46 H 1.08997 * 109.50924 * 181.35636 * 25 24 23 47 47 H 1.08994 * 109.50209 * 57.67478 * 26 21 20 48 48 H 1.08997 * 109.50514 * 297.54292 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6963 1.1192 6 7 1.7068 -0.2497 2.4546 7 6 0.8649 0.9417 2.5889 8 6 2.1948 -0.9406 3.6508 9 6 3.5224 -0.3576 4.0611 10 1 3.9588 0.4474 3.4884 11 6 4.1795 -0.8511 5.1683 12 7 3.6477 -1.8310 5.8659 13 14 5.8255 -0.1288 5.6765 14 1 5.6616 1.3173 5.9717 15 1 6.3201 -0.8290 6.8890 16 1 6.8036 -0.3010 4.5725 17 7 2.0184 -0.6906 -1.1962 18 6 1.4325 -1.7550 -1.7918 19 6 2.2123 -2.0700 -2.8522 20 6 1.9874 -3.1893 -3.8360 21 7 1.2682 -2.6735 -5.0085 22 6 2.0982 -1.7186 -5.7575 23 6 1.2915 -1.1631 -6.9342 24 8 0.8403 -2.2467 -7.7512 25 6 0.0283 -3.1947 -7.0532 26 6 0.8225 -3.7717 -5.8783 27 7 3.2190 -1.1890 -2.8587 28 7 3.0751 -0.3853 -1.8646 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 -0.1831 0.6441 2.6221 33 1 1.1228 1.4669 3.5086 34 1 1.0288 1.6004 1.7361 35 1 1.4767 -0.8151 4.4612 36 1 2.3155 -2.0019 3.4336 37 1 4.1101 -2.1784 6.6446 38 1 0.5264 -2.2542 -1.4820 39 1 1.3968 -3.9746 -3.3641 40 1 2.9488 -3.5962 -4.1494 41 1 2.9870 -2.2260 -6.1327 42 1 2.3951 -0.9005 -5.1013 43 1 1.9213 -0.4988 -7.5259 44 1 0.4319 -0.6092 -6.5569 45 1 -0.8681 -2.7004 -6.6788 46 1 -0.2560 -3.9995 -7.7312 47 1 0.1887 -4.4520 -5.3096 48 1 1.6905 -4.3120 -6.2561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603191168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:03 Heat of formation + Delta-G solvation = 16.059500 kcal Electronic energy + Delta-G solvation = -29678.359263 eV Core-core repulsion = 25577.583194 eV Total energy + Delta-G solvation = -4100.776069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.34159 -41.01681 -40.43508 -37.17965 -36.83101 -36.25099 -34.76107 -32.89925 -32.10884 -31.88871 -29.57819 -29.23544 -27.77363 -26.28652 -25.55637 -25.13909 -24.81107 -22.73915 -22.29754 -21.32574 -20.49280 -18.80012 -18.38368 -18.36896 -17.60678 -17.16797 -17.01305 -16.69946 -16.53214 -16.20068 -16.12200 -15.97372 -15.81086 -15.22181 -14.96539 -14.92211 -14.55402 -14.27624 -14.23774 -13.69579 -13.50936 -13.49416 -13.32710 -13.17654 -12.96975 -12.86521 -12.72726 -12.60998 -12.48657 -12.34863 -12.24631 -12.13249 -11.86037 -11.78496 -11.57806 -11.48206 -10.69758 -10.68960 -10.62566 -10.20757 -9.56529 -9.43931 -8.28466 -6.42339 0.55422 1.23369 1.32564 1.36827 1.42733 1.43083 1.52483 2.19548 2.36382 2.81180 2.99240 3.02094 3.28904 3.33442 3.53808 3.63656 3.77585 3.97077 3.99425 4.07733 4.19655 4.26375 4.31038 4.35919 4.48444 4.50866 4.55449 4.61378 4.64170 4.69228 4.75174 4.84349 4.86309 4.91270 4.92352 4.93263 5.03685 5.12904 5.14837 5.17045 5.45435 5.55385 5.73683 5.82675 5.95737 5.99000 6.19218 6.52868 6.66566 7.12975 7.30397 7.47749 8.78374 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.002288 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.741287 B =12236.229524 C =12592.587062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 H 0.151 0.849 4 C 0.489 3.511 5 O -0.588 6.588 6 N -0.594 5.594 7 C 0.062 3.938 8 C 0.262 3.738 9 C -0.546 4.546 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.924 5.924 13 Si 0.961 3.039 14 H -0.257 1.257 15 H -0.277 1.277 16 H -0.284 1.284 17 N -0.269 5.269 18 C -0.008 4.008 19 C -0.031 4.031 20 C 0.149 3.851 21 N -0.533 5.533 22 C 0.022 3.978 23 C 0.069 3.931 24 O -0.405 6.405 25 C 0.061 3.939 26 C 0.017 3.983 27 N -0.293 5.293 28 N -0.119 5.119 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.036 0.964 36 H -0.002 1.002 37 H 0.268 0.732 38 H 0.218 0.782 39 H 0.119 0.881 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.111 0.889 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.430 2.439 -20.978 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.168 0.832 4 C 0.275 3.725 5 O -0.468 6.468 6 N -0.325 5.325 7 C -0.079 4.079 8 C 0.140 3.860 9 C -0.585 4.585 10 H 0.069 0.931 11 C -0.189 4.189 12 N -0.564 5.564 13 Si 0.786 3.214 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.210 1.210 17 N -0.062 5.062 18 C -0.160 4.160 19 C -0.170 4.170 20 C 0.019 3.981 21 N -0.259 5.259 22 C -0.107 4.107 23 C -0.008 4.008 24 O -0.324 6.324 25 C -0.015 4.015 26 C -0.111 4.111 27 N -0.159 5.159 28 N -0.097 5.097 29 H 0.143 0.857 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.234 0.766 39 H 0.137 0.863 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.136 0.864 47 H 0.129 0.871 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.219 3.051 -20.956 25.508 hybrid contribution 1.345 -1.001 1.106 2.009 sum -12.874 2.050 -19.849 23.748 Atomic orbital electron populations 1.22507 0.85839 1.05903 1.07759 1.21812 0.99978 0.97432 0.78330 0.83167 1.20973 0.80843 0.84999 0.85664 1.90734 1.39888 1.29357 1.86819 1.48050 1.49697 1.29453 1.05274 1.22355 0.94895 0.86100 1.04514 1.18811 0.93820 0.91621 0.81712 1.21659 1.06156 1.19264 1.11420 0.93125 1.25784 1.01519 0.95255 0.96319 1.70017 1.40615 1.26946 1.18807 0.85561 0.79076 0.79379 0.77386 1.18151 1.20158 1.21042 1.47060 1.16803 1.22257 1.20067 1.23719 1.03363 0.92875 0.96079 1.22049 0.93954 1.01222 0.99788 1.20276 0.98053 0.91434 0.88303 1.62219 1.39867 1.16266 1.07563 1.22730 0.94813 0.97073 0.96038 1.22670 0.98123 0.88866 0.91113 1.87954 1.69888 1.36982 1.37604 1.22848 0.92723 0.92479 0.93481 1.22906 1.00047 0.93111 0.95007 1.74923 1.22247 1.04709 1.14066 1.78220 1.05145 1.22879 1.03459 0.85716 0.87608 0.90365 0.88887 0.90972 0.88468 0.94606 0.98380 0.92306 0.76579 0.86344 0.93743 0.94973 0.90671 0.87588 0.92102 0.91743 0.86356 0.87078 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.46 71.98 0.61 -1.69 16 2 C 0.13 3.36 2.85 44.25 0.13 3.48 16 3 H 0.15 3.33 7.40 -2.38 -0.02 3.31 16 4 C 0.49 18.93 7.14 87.66 0.63 19.55 16 5 O -0.59 -30.22 16.00 -3.03 -0.05 -30.27 16 6 N -0.59 -22.54 2.86 -851.13 -2.43 -24.98 16 7 C 0.06 1.46 8.80 127.77 1.12 2.58 16 8 C 0.26 13.34 5.16 85.63 0.44 13.78 16 9 C -0.55 -30.83 9.39 25.60 0.24 -30.59 16 10 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 11 C 0.01 0.62 5.46 84.65 0.46 1.08 16 12 N -0.92 -54.93 13.29 21.45 0.28 -54.65 16 13 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 17 N -0.27 -8.27 2.75 -330.73 -0.91 -9.18 16 18 C -0.01 -0.22 10.61 83.49 0.89 0.67 16 19 C -0.03 -0.88 5.98 41.60 0.25 -0.63 16 20 C 0.15 3.14 5.53 85.56 0.47 3.62 16 21 N -0.53 -10.14 4.72 -899.71 -4.24 -14.39 16 22 C 0.02 0.47 5.46 86.31 0.47 0.94 16 23 C 0.07 1.24 7.01 72.02 0.50 1.75 16 24 O -0.41 -7.76 10.83 -148.98 -1.61 -9.37 16 25 C 0.06 0.81 7.01 72.02 0.50 1.32 16 26 C 0.02 0.23 5.65 86.31 0.49 0.72 16 27 N -0.29 -10.32 11.38 -48.60 -0.55 -10.87 16 28 N -0.12 -4.38 13.16 37.02 0.49 -3.89 16 29 H 0.12 1.26 4.53 -2.39 -0.01 1.25 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.11 7.17 -2.39 -0.02 1.09 16 32 H 0.09 1.49 6.95 -2.39 -0.02 1.47 16 33 H 0.07 1.86 8.07 -2.39 -0.02 1.84 16 34 H 0.10 1.54 6.01 -2.39 -0.01 1.53 16 35 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 36 H 0.00 -0.12 7.42 -2.39 -0.02 -0.13 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.22 3.96 7.30 -2.91 -0.02 3.94 16 39 H 0.12 1.87 8.04 -2.39 -0.02 1.85 16 40 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 41 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.93 6.45 -2.39 -0.02 1.91 16 43 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.11 1.04 8.09 -2.39 -0.02 1.02 16 48 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -84.66 387.07 1.17 -83.49 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.96 Total: 10.60 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 7.21 Total: 16.57 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -7.36 Total: -117.95 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.66 Total: -39.64 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -84.66 1.17 -83.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603191168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.553 kcal (2) G-P(sol) polarization free energy of solvation -84.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds