Wall clock time and date at job start Tue Mar 31 2020 19:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 N 1.46897 * 109.47347 * 120.00253 * 2 1 3 5 5 C 1.46901 * 110.99907 * 306.04661 * 4 2 1 6 6 C 1.46898 * 110.99897 * 69.99759 * 4 2 1 7 7 C 1.52999 * 109.47209 * 75.10172 * 6 4 2 8 8 H 1.08993 * 109.47316 * 295.27177 * 7 6 4 9 9 C 1.52999 * 109.47245 * 175.27006 * 7 6 4 10 10 N 1.46504 * 109.47137 * 55.27053 * 7 6 4 11 11 C 1.34771 * 120.00073 * 207.76542 * 10 7 6 12 12 O 1.21371 * 119.99863 * 359.97438 * 11 10 7 13 13 C 1.49304 * 120.00175 * 180.02562 * 11 10 7 14 14 O 1.21408 * 119.99745 * 359.97438 * 13 11 10 15 15 N 1.34771 * 120.00175 * 180.02562 * 13 11 10 16 16 C 1.40300 * 120.00302 * 179.97438 * 15 13 11 17 17 C 1.40723 * 126.09459 * 359.69232 * 16 15 13 18 18 N 1.30876 * 108.37454 * 179.85184 * 17 16 15 19 19 N 1.40061 * 108.43619 * 0.40491 * 18 17 16 20 20 C 1.37293 * 126.05664 * 179.74052 * 19 18 17 21 21 H 1.08007 * 119.99701 * 179.97438 * 20 19 18 22 22 C 1.39001 * 120.00505 * 0.02562 * 20 19 18 23 23 N 1.31283 * 119.99450 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00474 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47285 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46890 * 120.00052 * 24 22 20 27 27 H 1.48503 * 109.47588 * 239.99762 * 24 22 20 28 28 C 1.35784 * 126.10249 * 179.97438 * 16 15 13 29 29 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46743 * 300.00095 * 1 2 3 31 31 H 1.08998 * 109.47130 * 59.99211 * 1 2 3 32 32 H 1.08999 * 109.47016 * 240.00340 * 2 1 3 33 33 H 1.09007 * 109.46887 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47229 * 299.99861 * 3 2 1 35 35 H 1.08999 * 109.46884 * 60.00259 * 3 2 1 36 36 H 1.08994 * 109.47208 * 66.18870 * 5 4 2 37 37 H 1.08995 * 109.47454 * 186.19553 * 5 4 2 38 38 H 1.09002 * 109.46964 * 306.19138 * 5 4 2 39 39 H 1.09002 * 109.47056 * 195.10292 * 6 4 2 40 40 H 1.08996 * 109.47258 * 315.09834 * 6 4 2 41 41 H 1.09004 * 109.47526 * 300.00247 * 9 7 6 42 42 H 1.09005 * 109.47244 * 59.99781 * 9 7 6 43 43 H 1.08998 * 109.47330 * 180.02562 * 9 7 6 44 44 H 0.96999 * 119.99601 * 27.76853 * 10 7 6 45 45 H 0.96999 * 120.00326 * 359.97438 * 15 13 11 46 46 H 1.07999 * 125.81408 * 359.97438 * 17 16 15 47 47 H 0.96999 * 120.00351 * 180.02562 * 23 22 20 48 48 H 1.08000 * 126.25056 * 359.94927 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4343 -0.1149 2.4166 6 6 1.7529 -2.1349 1.1202 7 6 2.7370 -2.7828 0.1441 8 1 2.5600 -2.3971 -0.8598 9 6 2.5373 -4.2997 0.1502 10 7 4.1084 -2.4691 0.5530 11 6 5.0913 -2.4189 -0.3677 12 8 4.8404 -2.6340 -1.5355 13 6 6.4890 -2.0998 0.0491 14 8 6.7400 -1.8850 1.2174 15 7 7.4718 -2.0491 -0.8716 16 6 8.7852 -1.7487 -0.4801 17 6 9.2172 -1.4740 0.8307 18 7 10.5053 -1.2443 0.8010 19 7 10.9441 -1.3531 -0.5247 20 6 12.2320 -1.1768 -0.9666 21 1 12.4623 -1.2853 -2.0162 22 6 13.2396 -0.8599 -0.0631 23 7 12.9599 -0.7296 1.2129 24 14 14.9920 -0.6208 -0.6643 25 1 15.0426 -0.8219 -2.1347 26 1 15.4438 0.7556 -0.3376 27 1 15.8825 -1.6052 0.0014 28 6 9.8651 -1.6658 -1.2990 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.3613 -0.3058 2.4296 37 1 1.8951 -0.5707 3.2930 38 1 1.6123 0.9604 2.4304 39 1 1.8731 -2.5814 2.1073 40 1 0.7336 -2.2972 0.7698 41 1 2.7143 -4.6855 1.1542 42 1 1.5169 -4.5331 -0.1540 43 1 3.2387 -4.7613 -0.5449 44 1 4.3088 -2.2976 1.4864 45 1 7.2713 -2.2202 -1.8051 46 1 8.5926 -1.4578 1.7116 47 1 13.6629 -0.5081 1.8434 48 1 9.8692 -1.8196 -2.3680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810441819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:25 Heat of formation + Delta-G solvation = -2.596817 kcal Electronic energy + Delta-G solvation = -29308.020643 eV Core-core repulsion = 25206.435575 eV Total energy + Delta-G solvation = -4101.585068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99599 -41.20200 -39.92601 -39.12939 -36.74681 -35.91621 -34.96052 -32.87138 -32.28474 -31.72214 -29.85021 -28.41643 -27.83700 -27.22450 -25.72961 -25.04917 -22.97639 -22.44441 -21.63623 -21.19969 -20.37232 -19.54028 -19.10329 -17.76455 -17.44887 -17.18815 -16.90415 -16.77483 -16.43100 -16.02290 -15.72045 -15.48319 -15.34191 -14.94019 -14.89736 -14.85300 -14.55901 -14.08751 -13.97596 -13.51492 -13.42898 -13.36438 -13.17676 -12.94895 -12.93252 -12.82791 -12.77551 -12.68842 -12.37702 -12.14725 -12.13264 -12.02212 -11.96118 -11.90321 -11.39364 -11.06883 -10.86106 -10.50649 -10.17580 -10.12755 -9.16380 -8.60289 -8.48156 -6.25530 0.37421 1.29624 1.37475 1.44943 1.60615 1.73888 2.09826 2.12808 2.57675 2.62579 2.90257 3.05031 3.08397 3.60939 3.73924 3.96199 4.07874 4.21458 4.31033 4.39213 4.40876 4.44264 4.53953 4.61666 4.64110 4.72633 4.74393 4.77493 4.85004 4.96002 4.97541 4.99305 5.01393 5.07577 5.11293 5.23991 5.27800 5.31837 5.33096 5.36507 5.41953 5.92312 6.09375 6.17237 6.18826 6.29020 6.55517 6.69320 6.91402 7.13407 7.42599 7.64095 8.51376 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.002166 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.563600 B =12922.782415 C =13327.001582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.142 4.142 4 N -0.551 5.551 5 C 0.021 3.979 6 C 0.047 3.953 7 C 0.144 3.856 8 H 0.078 0.922 9 C -0.159 4.159 10 N -0.664 5.664 11 C 0.525 3.475 12 O -0.548 6.548 13 C 0.485 3.515 14 O -0.543 6.543 15 N -0.585 5.585 16 C -0.054 4.054 17 C -0.049 4.049 18 N -0.307 5.307 19 N -0.164 5.164 20 C -0.352 4.352 21 H 0.141 0.859 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.076 4.076 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.416 0.584 45 H 0.422 0.578 46 H 0.175 0.825 47 H 0.278 0.722 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.752 -1.809 -2.449 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.036 4.036 3 C -0.199 4.199 4 N -0.275 5.275 5 C -0.126 4.126 6 C -0.081 4.081 7 C 0.040 3.960 8 H 0.096 0.904 9 C -0.218 4.218 10 N -0.316 5.316 11 C 0.305 3.695 12 O -0.427 6.427 13 C 0.267 3.733 14 O -0.421 6.421 15 N -0.230 5.230 16 C -0.161 4.161 17 C -0.225 4.225 18 N -0.139 5.139 19 N 0.068 4.932 20 C -0.483 4.483 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.227 4.227 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.253 0.747 45 H 0.259 0.741 46 H 0.192 0.808 47 H 0.087 0.913 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.173 -1.409 -1.513 23.265 hybrid contribution -0.673 -0.080 -0.499 0.841 sum -23.845 -1.489 -2.012 23.976 Atomic orbital electron populations 1.22385 0.95975 1.02404 1.02930 1.21699 0.93718 0.95220 0.92954 1.21809 1.00597 0.95333 1.02182 1.62125 1.59566 1.02904 1.02876 1.22445 0.97832 1.00633 0.91709 1.22493 0.97456 0.87851 1.00348 1.21256 0.79386 0.95869 0.99503 0.90401 1.22137 1.03265 0.93508 1.02885 1.45587 1.07354 1.67221 1.11398 1.19574 0.85589 0.78304 0.86019 1.90714 1.83526 1.50236 1.18231 1.20405 0.86828 0.80277 0.85755 1.90639 1.83275 1.49543 1.18657 1.42107 1.04394 1.64923 1.11596 1.17306 0.84643 1.20656 0.93458 1.24238 0.93197 1.07501 0.97519 1.78149 1.10605 1.27196 0.97955 1.44843 1.06486 1.37971 1.03876 1.20687 0.80445 1.50450 0.96741 0.84120 1.26893 1.05857 0.94313 0.94743 1.70385 1.35541 1.35634 1.03355 0.84520 0.73526 0.78199 0.79867 1.16416 1.19714 1.19702 1.21996 0.86540 1.15999 0.98182 0.91918 0.91755 0.91647 0.91378 0.94168 0.91599 0.91929 0.94037 0.91166 0.91459 0.88796 0.90695 0.91145 0.89094 0.93623 0.74656 0.74061 0.80826 0.91258 0.79564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.47 71.98 0.61 -1.35 16 2 C 0.07 1.13 2.83 44.92 0.13 1.25 16 3 C -0.14 -2.40 9.13 71.98 0.66 -1.74 16 4 N -0.55 -8.59 4.38 -897.08 -3.93 -12.51 16 5 C 0.02 0.27 8.57 127.69 1.09 1.37 16 6 C 0.05 0.58 4.46 86.30 0.38 0.96 16 7 C 0.14 2.47 2.62 44.99 0.12 2.59 16 8 H 0.08 1.59 6.26 -2.39 -0.01 1.57 16 9 C -0.16 -2.28 9.51 71.98 0.68 -1.60 16 10 N -0.66 -15.48 4.77 -444.02 -2.12 -17.60 16 11 C 0.53 15.91 7.87 87.22 0.69 16.60 16 12 O -0.55 -17.82 16.09 -3.31 -0.05 -17.87 16 13 C 0.49 17.99 7.85 87.22 0.69 18.67 16 14 O -0.54 -22.80 13.62 -3.43 -0.05 -22.84 16 15 N -0.59 -22.43 5.45 -305.33 -1.66 -24.10 16 16 C -0.05 -2.57 6.90 37.82 0.26 -2.31 16 17 C -0.05 -2.67 10.85 85.44 0.93 -1.75 16 18 N -0.31 -18.50 10.39 -56.43 -0.59 -19.09 16 19 N -0.16 -9.14 3.73 -189.98 -0.71 -9.85 16 20 C -0.35 -18.67 10.25 84.02 0.86 -17.81 16 21 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16 22 C -0.01 -0.32 5.50 84.96 0.47 0.15 16 23 N -0.82 -47.19 11.81 21.66 0.26 -46.93 16 24 Si 1.02 38.53 29.55 68.60 2.03 40.56 16 25 H -0.24 -8.19 7.11 99.48 0.71 -7.48 16 26 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 28 C -0.08 -3.62 11.50 83.41 0.96 -2.66 16 29 H 0.06 0.60 6.46 -2.39 -0.02 0.59 16 30 H 0.06 0.66 6.47 -2.39 -0.02 0.64 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.26 6.67 -2.39 -0.02 1.24 16 33 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.95 6.43 -2.39 -0.02 0.93 16 36 H 0.04 0.41 6.60 -2.39 -0.02 0.40 16 37 H 0.07 0.87 8.11 -2.39 -0.02 0.85 16 38 H 0.07 0.91 6.21 -2.39 -0.01 0.90 16 39 H 0.09 0.97 7.93 -2.39 -0.02 0.95 16 40 H 0.08 0.69 6.19 -2.39 -0.01 0.67 16 41 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.42 9.58 8.10 -92.71 -0.75 8.83 16 45 H 0.42 13.75 8.29 -92.71 -0.77 12.98 16 46 H 0.17 9.30 5.92 -2.91 -0.02 9.29 16 47 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.19 7.10 8.06 -2.91 -0.02 7.08 16 Total: -1.00 -73.06 390.10 1.19 -71.87 By element: Atomic # 1 Polarization: 46.49 SS G_CDS: -0.51 Total: 45.98 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 8.52 Total: 12.37 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -8.75 Total: -130.07 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.10 Total: -40.72 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -73.06 1.19 -71.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810441819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.274 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds