Wall clock time and date at job start Tue Mar 31 2020 19:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47178 * 2 1 4 4 N 1.46906 * 109.47117 * 120.00098 * 2 1 3 5 5 C 1.46896 * 110.99994 * 56.04794 * 4 2 1 6 6 C 1.46898 * 110.99742 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.47026 * 170.00023 * 6 4 2 8 8 H 1.08997 * 109.46998 * 64.99586 * 7 6 4 9 9 C 1.52996 * 109.47635 * 185.00242 * 7 6 4 10 10 N 1.46505 * 109.47050 * 305.00144 * 7 6 4 11 11 C 1.34778 * 120.00007 * 154.99707 * 10 7 6 12 12 O 1.21366 * 120.00035 * 0.02562 * 11 10 7 13 13 C 1.49309 * 119.99924 * 180.02562 * 11 10 7 14 14 O 1.21407 * 119.99668 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00138 * 180.02562 * 13 11 10 16 16 C 1.40296 * 120.00306 * 179.97438 * 15 13 11 17 17 C 1.40718 * 126.09771 * 359.96814 * 16 15 13 18 18 N 1.30874 * 108.37509 * 179.74082 * 17 16 15 19 19 N 1.40061 * 108.43445 * 0.44356 * 18 17 16 20 20 C 1.37294 * 126.05340 * 179.81771 * 19 18 17 21 21 H 1.07999 * 120.00339 * 173.75960 * 20 19 18 22 22 C 1.39009 * 120.00129 * 354.03394 * 20 19 18 23 23 N 1.31274 * 120.00094 * 5.58773 * 22 20 19 24 24 Si 1.86802 * 120.00082 * 185.58331 * 22 20 19 25 25 H 1.48497 * 109.47065 * 94.97773 * 24 22 20 26 26 H 1.48495 * 109.47224 * 214.98268 * 24 22 20 27 27 H 1.48506 * 109.47153 * 334.98084 * 24 22 20 28 28 C 1.35787 * 126.09925 * 179.97438 * 16 15 13 29 29 H 1.08995 * 109.47376 * 299.99630 * 1 2 3 30 30 H 1.09000 * 109.46826 * 60.00319 * 1 2 3 31 31 H 1.08998 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47444 * 239.99790 * 2 1 3 33 33 H 1.09006 * 109.47487 * 300.00059 * 3 2 1 34 34 H 1.09005 * 109.47413 * 60.00034 * 3 2 1 35 35 H 1.09006 * 109.47737 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47425 * 183.95426 * 5 4 2 37 37 H 1.09005 * 109.47030 * 303.95559 * 5 4 2 38 38 H 1.09003 * 109.47329 * 63.95423 * 5 4 2 39 39 H 1.08997 * 109.47486 * 50.00397 * 6 4 2 40 40 H 1.08997 * 109.47320 * 289.99861 * 6 4 2 41 41 H 1.09007 * 109.46622 * 300.00225 * 9 7 6 42 42 H 1.09001 * 109.46835 * 59.99255 * 9 7 6 43 43 H 1.08994 * 109.47476 * 180.02562 * 9 7 6 44 44 H 0.96997 * 120.00020 * 335.00214 * 10 7 6 45 45 H 0.97005 * 120.00018 * 359.97438 * 15 13 11 46 46 H 1.07996 * 125.81429 * 0.02869 * 17 16 15 47 47 H 0.96998 * 120.00239 * 179.97438 * 23 22 20 48 48 H 1.07992 * 126.25470 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4730 -2.0535 1.2816 6 6 3.4881 -0.7126 1.2330 7 6 3.9602 -1.2125 2.5999 8 1 3.6544 -2.2503 2.7326 9 6 5.4850 -1.1159 2.6796 10 7 3.3629 -0.3889 3.6540 11 6 3.2010 -0.8936 4.8932 12 8 3.5504 -2.0303 5.1359 13 6 2.5918 -0.0544 5.9674 14 8 2.2428 1.0828 5.7247 15 7 2.4304 -0.5589 7.2067 16 6 1.8585 0.2299 8.2162 17 6 1.4107 1.5567 8.0780 18 7 0.9358 1.9541 9.2310 19 7 1.0699 0.9058 10.1502 20 6 0.6905 0.9344 11.4693 21 1 0.7462 0.0365 12.0669 22 6 0.2292 2.1178 12.0344 23 7 0.0523 3.1790 11.2823 24 14 -0.1389 2.1978 13.8641 25 1 1.0457 2.7298 14.5845 26 1 -1.3020 3.0912 14.0964 27 1 -0.4529 0.8358 14.3659 28 6 1.6384 -0.1509 9.5008 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.7948 -2.5188 2.2132 37 1 0.3842 -2.0100 1.2544 38 1 1.8343 -2.6418 0.4380 39 1 3.8693 0.2943 1.0630 40 1 3.8603 -1.3783 0.4544 41 1 5.9294 -1.7287 1.8952 42 1 5.7907 -0.0781 2.5468 43 1 5.8213 -1.4725 3.6531 44 1 3.0840 0.5196 3.4602 45 1 2.7097 -1.4673 7.4007 46 1 1.4478 2.1452 7.1732 47 1 -0.2699 4.0047 11.6765 48 1 1.8709 -1.1141 9.9302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810464305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:28 Heat of formation + Delta-G solvation = -1.581268 kcal Electronic energy + Delta-G solvation = -29258.209816 eV Core-core repulsion = 25156.668785 eV Total energy + Delta-G solvation = -4101.541030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00212 -41.20878 -39.84987 -39.06314 -36.74271 -35.92494 -34.96636 -33.06782 -32.28651 -31.72381 -29.85834 -29.25811 -27.24873 -26.76443 -25.84568 -25.07608 -22.94175 -22.15172 -21.51514 -21.19928 -20.83435 -19.59635 -19.11378 -17.81684 -17.44380 -17.17578 -16.84724 -16.74077 -16.60157 -15.95237 -15.78765 -15.47368 -15.44503 -14.99965 -14.86365 -14.81918 -14.58433 -14.00738 -13.71108 -13.51566 -13.40437 -13.36295 -13.13378 -13.06810 -12.99970 -12.88671 -12.83146 -12.61082 -12.46515 -12.34583 -12.06156 -11.94250 -11.92566 -11.64442 -11.44064 -11.06381 -10.85523 -10.51177 -10.19007 -10.12641 -9.23978 -8.60323 -8.48517 -6.25719 0.36723 1.30415 1.36835 1.44487 1.59584 1.74059 2.09237 2.13074 2.57410 2.61788 2.86104 3.02824 3.07591 3.60412 3.73596 3.98217 4.07292 4.18216 4.30237 4.40770 4.41113 4.46705 4.51826 4.54306 4.63748 4.72955 4.76831 4.83181 4.92333 4.95648 4.97548 4.98005 4.99848 5.06242 5.13333 5.23879 5.26917 5.32863 5.34120 5.38899 5.44174 5.92284 6.08253 6.13063 6.18182 6.28877 6.55063 6.69230 6.90267 7.13034 7.42710 7.63999 8.51045 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.002210 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.954800 B =12668.710258 C =13411.287230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 C -0.148 4.148 4 N -0.551 5.551 5 C 0.021 3.979 6 C 0.046 3.954 7 C 0.143 3.857 8 H 0.080 0.920 9 C -0.160 4.160 10 N -0.666 5.666 11 C 0.525 3.475 12 O -0.547 6.547 13 C 0.485 3.515 14 O -0.543 6.543 15 N -0.585 5.585 16 C -0.055 4.055 17 C -0.049 4.049 18 N -0.308 5.308 19 N -0.164 5.164 20 C -0.354 4.354 21 H 0.141 0.859 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.243 1.243 28 C -0.076 4.076 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.417 0.583 45 H 0.422 0.578 46 H 0.175 0.825 47 H 0.278 0.722 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 -9.346 -21.488 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 C -0.205 4.205 4 N -0.276 5.276 5 C -0.127 4.127 6 C -0.082 4.082 7 C 0.039 3.961 8 H 0.098 0.902 9 C -0.218 4.218 10 N -0.317 5.317 11 C 0.305 3.695 12 O -0.426 6.426 13 C 0.267 3.733 14 O -0.421 6.421 15 N -0.230 5.230 16 C -0.161 4.161 17 C -0.224 4.224 18 N -0.140 5.140 19 N 0.068 4.932 20 C -0.485 4.485 21 H 0.158 0.842 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.166 1.166 28 C -0.226 4.226 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.254 0.746 45 H 0.260 0.740 46 H 0.192 0.808 47 H 0.088 0.912 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.001 -7.911 -20.502 22.780 hybrid contribution 0.284 -0.849 -0.334 0.956 sum 6.285 -8.760 -20.836 23.461 Atomic orbital electron populations 1.21912 0.94435 1.02034 1.02119 1.21638 0.95675 0.95266 0.90346 1.21924 1.01452 0.94819 1.02304 1.61988 1.07836 1.17585 1.40209 1.22433 1.00956 0.88683 1.00631 1.22542 0.87764 1.03283 0.94618 1.21263 0.93567 0.95361 0.85872 0.90201 1.22135 0.93443 1.03470 1.02780 1.45614 1.59787 1.18578 1.07727 1.19581 0.79467 0.86275 0.84173 1.90717 1.51040 1.18738 1.82073 1.20400 0.81579 0.87485 0.83827 1.90642 1.50516 1.19403 1.81525 1.42102 1.57089 1.16549 1.07250 1.17304 1.15905 0.93537 0.89336 1.24232 1.05217 0.95136 0.97832 1.78144 1.26113 1.11931 0.97789 1.44836 1.33436 1.06994 1.07916 1.20650 1.45583 1.00028 0.82222 0.84158 1.26888 0.94614 0.93921 1.06278 1.70378 1.34111 1.02103 1.38250 0.84569 0.78172 0.79962 0.73454 1.19137 1.20044 1.16641 1.21999 1.11754 0.96457 0.92422 0.93301 0.91089 0.92380 0.93355 0.91180 0.93013 0.91638 0.92636 0.91092 0.94424 0.88370 0.91285 0.89105 0.91192 0.93539 0.74595 0.74039 0.80834 0.91243 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.84 71.98 0.64 -1.46 16 2 C 0.08 1.05 2.67 44.91 0.12 1.17 16 3 C -0.15 -1.85 8.99 71.98 0.65 -1.21 16 4 N -0.55 -8.73 4.36 -897.06 -3.91 -12.64 16 5 C 0.02 0.33 8.95 127.69 1.14 1.48 16 6 C 0.05 0.58 4.33 86.30 0.37 0.96 16 7 C 0.14 2.45 2.35 44.99 0.11 2.56 16 8 H 0.08 1.58 6.23 -2.39 -0.01 1.57 16 9 C -0.16 -2.32 9.48 71.98 0.68 -1.64 16 10 N -0.67 -15.43 4.79 -444.00 -2.13 -17.56 16 11 C 0.53 15.75 7.85 87.23 0.68 16.43 16 12 O -0.55 -17.54 16.14 -3.30 -0.05 -17.59 16 13 C 0.49 17.87 7.85 87.23 0.69 18.56 16 14 O -0.54 -22.72 13.62 -3.42 -0.05 -22.77 16 15 N -0.59 -22.28 5.45 -305.34 -1.66 -23.94 16 16 C -0.05 -2.57 6.90 37.82 0.26 -2.31 16 17 C -0.05 -2.64 10.84 85.44 0.93 -1.72 16 18 N -0.31 -18.52 10.41 -56.44 -0.59 -19.11 16 19 N -0.16 -9.13 3.73 -189.99 -0.71 -9.84 16 20 C -0.35 -18.75 10.24 84.02 0.86 -17.89 16 21 H 0.14 6.47 7.84 -2.91 -0.02 6.44 16 22 C 0.00 -0.25 5.50 84.96 0.47 0.21 16 23 N -0.82 -47.08 11.83 21.66 0.26 -46.83 16 24 Si 1.02 38.48 29.56 68.60 2.03 40.50 16 25 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 26 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 27 H -0.24 -8.31 7.11 99.48 0.71 -7.60 16 28 C -0.08 -3.57 11.50 83.41 0.96 -2.61 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.79 6.26 -2.39 -0.01 0.78 16 32 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 0.69 6.20 -2.38 -0.01 0.67 16 36 H 0.05 1.05 6.58 -2.39 -0.02 1.04 16 37 H 0.07 1.16 6.01 -2.38 -0.01 1.14 16 38 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.10 1.08 5.83 -2.39 -0.01 1.06 16 40 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 41 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.42 9.69 8.07 -92.71 -0.75 8.94 16 45 H 0.42 13.63 8.29 -92.70 -0.77 12.86 16 46 H 0.17 9.28 5.92 -2.91 -0.02 9.26 16 47 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.19 7.08 8.06 -2.91 -0.02 7.06 16 Total: -1.00 -72.53 392.49 1.23 -71.31 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -0.51 Total: 45.92 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 8.55 Total: 12.54 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -8.74 Total: -129.91 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.10 Total: -40.36 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Total: -72.53 1.23 -71.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810464305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.726 kcal (2) G-P(sol) polarization free energy of solvation -72.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds