Wall clock time and date at job start Tue Mar 31 2020 20:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47120 * 2 1 4 4 C 1.34818 * 126.59550 * 125.03003 * 3 2 1 5 5 C 1.36594 * 106.83966 * 179.97438 * 4 3 2 6 6 C 1.47527 * 125.76621 * 179.97438 * 5 4 3 7 7 O 1.21592 * 120.00314 * 353.66261 * 6 5 4 8 8 N 1.34779 * 119.99731 * 173.66728 * 6 5 4 9 9 C 1.46501 * 119.99844 * 3.75474 * 8 6 5 10 10 C 1.50696 * 109.47082 * 83.41705 * 9 8 6 11 11 H 1.08006 * 120.00027 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00208 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00174 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00076 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47325 * 89.99897 * 14 12 10 16 16 H 1.48500 * 109.47457 * 210.00190 * 14 12 10 17 17 H 1.48503 * 109.46489 * 330.00021 * 14 12 10 18 18 C 1.46500 * 120.00046 * 183.76033 * 8 6 5 19 19 C 1.52997 * 109.47175 * 89.99823 * 18 8 6 20 20 N 1.46902 * 109.46972 * 180.02562 * 19 18 8 21 21 C 1.47018 * 110.99653 * 293.62906 * 20 19 18 22 22 C 1.53092 * 109.25647 * 177.60656 * 21 20 19 23 23 O 1.43013 * 109.25651 * 56.85289 * 22 21 20 24 24 C 1.43023 * 113.73957 * 301.32560 * 23 22 21 25 25 C 1.47014 * 110.99817 * 169.99872 * 20 19 18 26 26 N 1.34393 * 108.45992 * 359.97438 * 5 4 3 27 27 N 1.28760 * 109.52407 * 0.02562 * 26 5 4 28 28 H 1.08994 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47188 * 299.99756 * 1 2 3 30 30 H 1.08997 * 109.46889 * 59.99701 * 1 2 3 31 31 H 1.09003 * 109.47188 * 240.00244 * 2 1 3 32 32 H 1.08996 * 109.47560 * 119.99967 * 2 1 3 33 33 H 1.08005 * 126.57658 * 359.95303 * 4 3 2 34 34 H 1.09005 * 109.47188 * 203.41472 * 9 8 6 35 35 H 1.08998 * 109.47396 * 323.41396 * 9 8 6 36 36 H 0.97008 * 120.00085 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.46818 * 210.00022 * 18 8 6 38 38 H 1.08997 * 109.46616 * 329.99379 * 18 8 6 39 39 H 1.09000 * 109.46908 * 299.99749 * 19 18 8 40 40 H 1.08994 * 109.47188 * 59.99690 * 19 18 8 41 41 H 1.08995 * 109.50891 * 297.54490 * 21 20 19 42 42 H 1.09003 * 109.50292 * 57.68090 * 21 20 19 43 43 H 1.09005 * 109.51364 * 296.91958 * 22 21 20 44 44 H 1.08999 * 109.54393 * 176.80912 * 22 21 20 45 45 H 1.08995 * 109.50496 * 298.73806 * 24 23 22 46 46 H 1.09004 * 109.54041 * 178.62768 * 24 23 22 47 47 H 1.08993 * 109.50931 * 302.32520 * 25 20 19 48 48 H 1.09000 * 109.50466 * 62.41573 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8720 1.9319 0.8863 5 6 3.0511 3.2321 0.5079 6 6 3.9082 4.2190 1.1920 7 8 4.4405 3.9340 2.2474 8 7 4.1011 5.4365 0.6470 9 6 3.3951 5.8094 -0.5813 10 6 2.0141 6.3044 -0.2364 11 1 1.6942 6.3375 0.7946 12 6 1.1591 6.7150 -1.2370 13 7 -0.0462 7.1466 -0.9361 14 14 1.7126 6.6585 -3.0203 15 1 1.3642 5.3388 -3.6052 16 1 1.0313 7.7341 -3.7845 17 1 3.1827 6.8577 -3.0887 18 6 5.0168 6.3869 1.2829 19 6 6.4256 6.1933 0.7184 20 7 7.3439 7.1460 1.3566 21 6 7.0117 8.5286 0.9832 22 6 7.9527 9.4892 1.7151 23 8 9.3069 9.1539 1.4005 24 6 9.6649 7.8144 1.7514 25 6 8.7412 6.8369 1.0199 26 7 2.3145 3.4603 -0.5928 27 7 1.6885 2.3844 -0.9223 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3267 1.4395 1.7333 34 1 3.9468 6.5985 -1.0922 35 1 3.3169 4.9398 -1.2338 36 1 -0.6477 7.4358 -1.6401 37 1 4.6814 7.4044 1.0820 38 1 5.0296 6.2145 2.3591 39 1 6.7608 5.1758 0.9194 40 1 6.4127 6.3657 -0.3577 41 1 7.1294 8.6533 -0.0932 42 1 5.9809 8.7439 1.2647 43 1 7.7968 9.4028 2.7904 44 1 7.7480 10.5119 1.3986 45 1 9.5587 7.6794 2.8277 46 1 10.6984 7.6253 1.4610 47 1 8.9729 5.8174 1.3280 48 1 8.8863 6.9339 -0.0561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931268998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:47 Heat of formation + Delta-G solvation = 46.190338 kcal Electronic energy + Delta-G solvation = -30123.889766 eV Core-core repulsion = 26024.420268 eV Total energy + Delta-G solvation = -4099.469498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69879 -39.65478 -38.80080 -36.16645 -35.27393 -34.73655 -32.37143 -31.28539 -30.97877 -30.55773 -29.32014 -27.67815 -26.09095 -24.43163 -24.06641 -23.29595 -22.37554 -21.41669 -21.32400 -20.34360 -18.83517 -17.11370 -16.91554 -16.55322 -16.20005 -15.95099 -15.69773 -15.61559 -15.15857 -15.04052 -14.73043 -14.47647 -14.28356 -14.06980 -13.86375 -13.46501 -13.31151 -12.88272 -12.69708 -12.38748 -12.35558 -12.23616 -12.08956 -12.03139 -11.78921 -11.48790 -11.40966 -11.28071 -10.80329 -10.73268 -10.66653 -10.41926 -10.13799 -9.99740 -9.91945 -9.75058 -9.43497 -9.34373 -8.78952 -8.46357 -8.39314 -7.72533 -5.99547 -3.96125 1.56568 2.38623 2.40596 3.36118 3.40465 3.45582 3.49660 3.78841 3.90565 4.10114 4.41385 4.49716 4.70573 4.75575 4.81530 4.94942 4.95815 4.97890 5.08500 5.12331 5.22117 5.35487 5.35539 5.38777 5.42620 5.49184 5.51094 5.52289 5.59120 5.72074 5.78042 5.80115 5.89720 5.91318 5.98101 6.11609 6.28025 6.41356 6.54521 6.73130 6.94454 6.97578 7.06739 7.08053 7.43317 7.67969 8.12424 8.49438 8.61169 8.87688 9.04166 9.62516 11.13999 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.003574 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.529117 B = 7832.718304 C = 9700.485922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.373 5.373 4 C 0.076 3.924 5 C -0.089 4.089 6 C 0.605 3.395 7 O -0.567 6.567 8 N -0.576 5.576 9 C 0.200 3.800 10 C -0.512 4.512 11 H 0.071 0.929 12 C 0.083 3.917 13 N -0.899 5.899 14 Si 0.870 3.130 15 H -0.269 1.269 16 H -0.290 1.290 17 H -0.269 1.269 18 C 0.125 3.875 19 C 0.043 3.957 20 N -0.532 5.532 21 C 0.011 3.989 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 N -0.148 5.148 27 N -0.081 5.081 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.196 0.804 34 H 0.025 0.975 35 H 0.060 0.940 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -9.202 3.334 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 N -0.158 5.158 4 C -0.081 4.081 5 C -0.227 4.227 6 C 0.391 3.609 7 O -0.448 6.448 8 N -0.304 5.304 9 C 0.079 3.921 10 C -0.550 4.550 11 H 0.090 0.910 12 C -0.119 4.119 13 N -0.538 5.538 14 Si 0.697 3.303 15 H -0.195 1.195 16 H -0.216 1.216 17 H -0.194 1.194 18 C 0.001 3.999 19 C -0.085 4.085 20 N -0.258 5.258 21 C -0.117 4.117 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 N -0.021 5.021 27 N -0.061 5.061 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.213 0.787 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.521 -8.886 2.943 14.844 hybrid contribution 0.278 -0.522 -0.958 1.126 sum 11.799 -9.408 1.985 15.220 Atomic orbital electron populations 1.22073 0.93093 1.03047 1.04347 1.21858 0.96678 0.77110 1.04268 1.50636 1.32173 1.12043 1.20990 1.23180 0.94318 0.94485 0.96100 1.21404 1.07509 0.94269 0.99558 1.16774 0.79299 0.81340 0.83442 1.90707 1.52351 1.79345 1.22354 1.47731 1.42176 1.12684 1.27842 1.20251 0.92748 0.97071 0.82010 1.21128 0.96175 1.42190 0.95533 0.91041 1.24692 0.94460 0.94386 0.98372 1.69897 1.06945 1.44028 1.32968 0.86950 0.79017 0.78247 0.86060 1.19461 1.21578 1.19397 1.21255 0.86698 0.93262 0.98692 1.22525 0.93323 0.96197 0.96490 1.62136 1.02224 1.02473 1.58963 1.22903 1.01156 0.88858 0.98823 1.22684 0.80963 0.98186 0.99402 1.87958 1.28732 1.29717 1.84385 1.22641 0.97929 0.81552 0.99071 1.22764 0.89022 1.00395 0.98820 1.75197 1.02420 1.14890 1.09569 1.82098 1.21143 0.90605 1.12262 0.90430 0.91679 0.90622 0.88961 0.88347 0.78688 0.95701 0.92239 0.92793 0.90147 0.89496 0.90462 0.94439 0.93791 0.88710 0.92150 0.88448 0.92230 0.88724 0.89675 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.12 37.16 0.38 -1.16 16 2 C 0.12 1.11 7.26 -4.04 -0.03 1.08 16 3 N -0.37 -5.52 3.69 -61.06 -0.23 -5.74 16 4 C 0.08 1.17 11.28 -16.83 -0.19 0.98 16 5 C -0.09 -1.79 6.67 -83.55 -0.56 -2.35 16 6 C 0.60 12.84 7.61 -12.47 -0.09 12.75 16 7 O -0.57 -12.26 16.43 5.29 0.09 -12.17 16 8 N -0.58 -12.21 2.48 -176.29 -0.44 -12.65 16 9 C 0.20 4.74 3.83 -5.19 -0.02 4.72 16 10 C -0.51 -14.20 8.89 -34.44 -0.31 -14.51 16 11 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 12 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 13 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 14 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 18 C 0.12 2.26 5.34 -4.04 -0.02 2.24 16 19 C 0.04 0.68 5.28 -3.82 -0.02 0.65 16 20 N -0.53 -7.29 4.73 -234.31 -1.11 -8.40 16 21 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 22 C 0.06 0.73 7.01 37.20 0.26 0.99 16 23 O -0.39 -4.86 10.83 -35.23 -0.38 -5.25 16 24 C 0.07 0.68 7.01 37.21 0.26 0.94 16 25 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 26 N -0.15 -3.30 8.06 32.85 0.26 -3.04 16 27 N -0.08 -1.61 13.65 60.35 0.82 -0.79 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.20 2.25 8.06 -52.48 -0.42 1.82 16 34 H 0.03 0.58 7.08 -51.93 -0.37 0.21 16 35 H 0.06 1.45 4.75 -51.93 -0.25 1.20 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 1.45 6.45 -51.93 -0.33 1.11 16 38 H 0.09 1.63 7.37 -51.93 -0.38 1.25 16 39 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 40 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.23 6.38 -51.93 -0.33 0.90 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 48 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -35.28 389.08 -7.07 -42.35 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.58 Total: 0.65 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.48 Total: 8.92 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.09 Total: -57.36 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.29 Total: -17.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.28 -7.07 -42.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931268998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.540 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds