Wall clock time and date at job start Tue Mar 31 2020 20:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47120 * 2 1 4 4 C 1.34818 * 126.59550 * 125.03003 * 3 2 1 5 5 C 1.36594 * 106.83966 * 179.97438 * 4 3 2 6 6 C 1.47527 * 125.76621 * 179.97438 * 5 4 3 7 7 O 1.21592 * 120.00314 * 353.66261 * 6 5 4 8 8 N 1.34779 * 119.99731 * 173.66728 * 6 5 4 9 9 C 1.46501 * 119.99844 * 3.75474 * 8 6 5 10 10 C 1.50696 * 109.47082 * 83.41705 * 9 8 6 11 11 H 1.08006 * 120.00027 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00208 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00174 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00076 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47325 * 89.99897 * 14 12 10 16 16 H 1.48500 * 109.47457 * 210.00190 * 14 12 10 17 17 H 1.48503 * 109.46489 * 330.00021 * 14 12 10 18 18 C 1.46500 * 120.00046 * 183.76033 * 8 6 5 19 19 C 1.52997 * 109.47175 * 89.99823 * 18 8 6 20 20 N 1.46902 * 109.46972 * 180.02562 * 19 18 8 21 21 C 1.47018 * 110.99653 * 293.62906 * 20 19 18 22 22 C 1.53092 * 109.25647 * 177.60656 * 21 20 19 23 23 O 1.43013 * 109.25651 * 56.85289 * 22 21 20 24 24 C 1.43023 * 113.73957 * 301.32560 * 23 22 21 25 25 C 1.47014 * 110.99817 * 169.99872 * 20 19 18 26 26 N 1.34393 * 108.45992 * 359.97438 * 5 4 3 27 27 N 1.28760 * 109.52407 * 0.02562 * 26 5 4 28 28 H 1.08994 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47188 * 299.99756 * 1 2 3 30 30 H 1.08997 * 109.46889 * 59.99701 * 1 2 3 31 31 H 1.09003 * 109.47188 * 240.00244 * 2 1 3 32 32 H 1.08996 * 109.47560 * 119.99967 * 2 1 3 33 33 H 1.08005 * 126.57658 * 359.95303 * 4 3 2 34 34 H 1.09005 * 109.47188 * 203.41472 * 9 8 6 35 35 H 1.08998 * 109.47396 * 323.41396 * 9 8 6 36 36 H 0.97008 * 120.00085 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.46818 * 210.00022 * 18 8 6 38 38 H 1.08997 * 109.46616 * 329.99379 * 18 8 6 39 39 H 1.09000 * 109.46908 * 299.99749 * 19 18 8 40 40 H 1.08994 * 109.47188 * 59.99690 * 19 18 8 41 41 H 1.08995 * 109.50891 * 297.54490 * 21 20 19 42 42 H 1.09003 * 109.50292 * 57.68090 * 21 20 19 43 43 H 1.09005 * 109.51364 * 296.91958 * 22 21 20 44 44 H 1.08999 * 109.54393 * 176.80912 * 22 21 20 45 45 H 1.08995 * 109.50496 * 298.73806 * 24 23 22 46 46 H 1.09004 * 109.54041 * 178.62768 * 24 23 22 47 47 H 1.08993 * 109.50931 * 302.32520 * 25 20 19 48 48 H 1.09000 * 109.50466 * 62.41573 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8720 1.9319 0.8863 5 6 3.0511 3.2321 0.5079 6 6 3.9082 4.2190 1.1920 7 8 4.4405 3.9340 2.2474 8 7 4.1011 5.4365 0.6470 9 6 3.3951 5.8094 -0.5813 10 6 2.0141 6.3044 -0.2364 11 1 1.6942 6.3375 0.7946 12 6 1.1591 6.7150 -1.2370 13 7 -0.0462 7.1466 -0.9361 14 14 1.7126 6.6585 -3.0203 15 1 1.3642 5.3388 -3.6052 16 1 1.0313 7.7341 -3.7845 17 1 3.1827 6.8577 -3.0887 18 6 5.0168 6.3869 1.2829 19 6 6.4256 6.1933 0.7184 20 7 7.3439 7.1460 1.3566 21 6 7.0117 8.5286 0.9832 22 6 7.9527 9.4892 1.7151 23 8 9.3069 9.1539 1.4005 24 6 9.6649 7.8144 1.7514 25 6 8.7412 6.8369 1.0199 26 7 2.3145 3.4603 -0.5928 27 7 1.6885 2.3844 -0.9223 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3267 1.4395 1.7333 34 1 3.9468 6.5985 -1.0922 35 1 3.3169 4.9398 -1.2338 36 1 -0.6477 7.4358 -1.6401 37 1 4.6814 7.4044 1.0820 38 1 5.0296 6.2145 2.3591 39 1 6.7608 5.1758 0.9194 40 1 6.4127 6.3657 -0.3577 41 1 7.1294 8.6533 -0.0932 42 1 5.9809 8.7439 1.2647 43 1 7.7968 9.4028 2.7904 44 1 7.7480 10.5119 1.3986 45 1 9.5587 7.6794 2.8277 46 1 10.6984 7.6253 1.4610 47 1 8.9729 5.8174 1.3280 48 1 8.8863 6.9339 -0.0561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931268998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:46 Heat of formation + Delta-G solvation = 19.087938 kcal Electronic energy + Delta-G solvation = -30125.065015 eV Core-core repulsion = 26024.420268 eV Total energy + Delta-G solvation = -4100.644746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.07236 -40.81639 -40.21225 -37.44851 -36.55644 -36.04552 -34.46351 -32.30759 -32.16947 -31.81351 -30.67586 -29.45933 -27.31267 -25.46180 -25.01222 -24.88074 -24.11478 -22.72510 -22.53666 -21.34742 -20.30738 -19.05018 -18.43255 -17.78933 -17.32365 -17.20813 -16.99573 -16.88882 -16.24875 -16.16610 -15.95843 -15.88955 -15.60359 -15.43943 -15.00984 -14.90597 -14.61159 -14.49110 -14.12228 -13.80660 -13.70039 -13.49480 -13.23854 -13.17377 -12.97011 -12.81842 -12.58745 -12.44572 -12.30847 -12.24790 -12.08417 -11.84642 -11.72488 -11.52671 -11.39490 -11.16722 -11.02361 -10.70663 -10.63429 -10.19700 -9.55612 -9.37230 -8.22163 -6.22282 0.29472 0.84488 1.31334 1.36064 1.43421 1.45999 2.07240 2.35000 2.40081 2.83060 2.99461 3.16599 3.36507 3.52815 3.77660 3.86634 3.94619 3.99915 4.02895 4.08032 4.10720 4.20864 4.31498 4.33004 4.38874 4.43127 4.45827 4.58024 4.60377 4.71692 4.73763 4.75448 4.81238 4.83996 4.91504 4.92045 4.98950 5.03406 5.19485 5.27387 5.54766 5.64722 5.69135 5.88043 5.93002 6.18062 6.22512 6.52658 6.75053 7.05762 7.29901 7.40958 8.95313 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.003574 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.529117 B = 7832.718304 C = 9700.485922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.354 5.354 4 C 0.106 3.894 5 C -0.130 4.130 6 C 0.601 3.399 7 O -0.576 6.576 8 N -0.584 5.584 9 C 0.215 3.785 10 C -0.500 4.500 11 H 0.022 0.978 12 C 0.030 3.970 13 N -0.949 5.949 14 Si 0.930 3.070 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.244 1.244 18 C 0.126 3.874 19 C 0.060 3.940 20 N -0.538 5.538 21 C 0.009 3.991 22 C 0.068 3.932 23 O -0.404 6.404 24 C 0.065 3.935 25 C 0.017 3.983 26 N -0.194 5.194 27 N -0.114 5.114 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.241 0.759 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.308 -11.298 3.220 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.139 5.139 4 C -0.053 4.053 5 C -0.270 4.270 6 C 0.389 3.611 7 O -0.457 6.457 8 N -0.313 5.313 9 C 0.093 3.907 10 C -0.539 4.539 11 H 0.041 0.959 12 C -0.168 4.168 13 N -0.590 5.590 14 Si 0.755 3.245 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.168 1.168 18 C 0.003 3.997 19 C -0.069 4.069 20 N -0.264 5.264 21 C -0.119 4.119 22 C -0.009 4.009 23 O -0.322 6.322 24 C -0.012 4.012 25 C -0.111 4.111 26 N -0.066 5.066 27 N -0.094 5.094 28 H 0.133 0.867 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.257 0.743 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.115 0.885 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.668 -10.999 2.823 17.770 hybrid contribution -0.437 -0.045 -0.758 0.876 sum 13.231 -11.044 2.065 17.358 Atomic orbital electron populations 1.22077 0.93329 1.04795 1.02145 1.22520 0.96506 0.74249 1.07674 1.51027 1.30599 1.13086 1.19156 1.23766 0.92653 0.92816 0.96051 1.21592 1.08862 0.96100 1.00439 1.17021 0.79234 0.81484 0.83372 1.90678 1.52929 1.79583 1.22552 1.47737 1.42648 1.13439 1.27436 1.19927 0.90613 0.97031 0.83146 1.21186 0.98186 1.41412 0.93102 0.95948 1.25460 0.94331 0.94129 1.02832 1.70044 1.08522 1.46058 1.34413 0.85975 0.80047 0.78012 0.80502 1.19674 1.21116 1.16765 1.21314 0.87831 0.92447 0.98095 1.22246 0.92067 0.96648 0.95960 1.62138 1.03062 1.02432 1.58792 1.22936 1.01394 0.88890 0.98647 1.22731 0.80256 0.98521 0.99407 1.87944 1.28992 1.30720 1.84582 1.22796 0.98827 0.80350 0.99185 1.22868 0.87774 1.01536 0.98875 1.75102 1.03763 1.16606 1.11138 1.81953 1.21932 0.91414 1.14084 0.86688 0.93232 0.93451 0.86711 0.83752 0.74260 0.94874 0.91983 0.92789 0.90595 0.90366 0.90641 0.94943 0.94486 0.89385 0.91745 0.86812 0.91817 0.86262 0.88534 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.12 71.98 0.73 -1.95 16 2 C 0.11 1.57 7.26 86.38 0.63 2.20 16 3 N -0.35 -9.73 3.69 -347.10 -1.28 -11.01 16 4 C 0.11 3.03 11.28 83.85 0.95 3.98 16 5 C -0.13 -5.23 6.67 40.82 0.27 -4.95 16 6 C 0.60 25.70 7.61 86.69 0.66 26.36 16 7 O -0.58 -24.68 16.43 -4.00 -0.07 -24.74 16 8 N -0.58 -25.24 2.48 -829.93 -2.05 -27.30 16 9 C 0.22 10.32 3.83 85.63 0.33 10.65 16 10 C -0.50 -28.83 8.89 25.60 0.23 -28.60 16 11 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 12 C 0.03 1.77 5.47 84.65 0.46 2.23 16 13 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 14 Si 0.93 45.22 27.47 68.60 1.88 47.11 16 15 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 17 H -0.24 -10.78 6.54 99.48 0.65 -10.13 16 18 C 0.13 4.65 5.34 86.38 0.46 5.11 16 19 C 0.06 1.84 5.28 86.30 0.46 2.30 16 20 N -0.54 -14.31 4.73 -895.24 -4.23 -18.54 16 21 C 0.01 0.24 5.44 86.31 0.47 0.71 16 22 C 0.07 1.44 7.01 72.01 0.50 1.95 16 23 O -0.40 -9.34 10.83 -148.98 -1.61 -10.95 16 24 C 0.07 1.22 7.01 72.01 0.50 1.73 16 25 C 0.02 0.38 5.64 86.31 0.49 0.86 16 26 N -0.19 -8.80 8.06 -50.00 -0.40 -9.20 16 27 N -0.11 -4.52 13.65 37.02 0.51 -4.02 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.14 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.24 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.03 1.53 7.08 -2.38 -0.02 1.52 16 35 H 0.06 3.05 4.75 -2.39 -0.01 3.04 16 36 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 37 H 0.08 2.82 6.45 -2.39 -0.02 2.80 16 38 H 0.08 3.00 7.37 -2.39 -0.02 2.98 16 39 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 40 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 2.30 6.38 -2.39 -0.02 2.29 16 43 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.10 1.86 8.09 -2.39 -0.02 1.84 16 48 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -81.12 389.08 1.07 -80.05 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.90 Total: 16.02 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 7.13 Total: 22.57 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -7.17 Total: -130.05 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.68 Total: -35.70 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -81.12 1.07 -80.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931268998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.136 kcal (2) G-P(sol) polarization free energy of solvation -81.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds