Wall clock time and date at job start Tue Mar 31 2020 20:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46995 * 2 1 4 4 N 1.28708 * 126.03527 * 275.19990 * 3 2 1 5 5 N 1.28514 * 110.63663 * 180.29990 * 4 3 2 6 6 C 1.33321 * 109.43908 * 359.71618 * 5 4 3 7 7 C 1.50705 * 126.81159 * 179.97438 * 6 5 4 8 8 C 1.37004 * 106.37159 * 0.02562 * 6 5 4 9 9 C 1.47234 * 127.18666 * 180.02562 * 8 6 5 10 10 O 1.21619 * 119.99840 * 80.65813 * 9 8 6 11 11 N 1.34776 * 119.99900 * 260.65290 * 9 8 6 12 12 C 1.46497 * 120.00111 * 184.66507 * 11 9 8 13 13 C 1.52998 * 109.47248 * 180.02562 * 12 11 9 14 14 H 1.08996 * 108.45249 * 57.88391 * 13 12 11 15 15 C 1.47485 * 108.55064 * 175.84734 * 13 12 11 16 16 N 1.50116 * 106.48788 * 178.00843 * 15 13 12 17 17 C 1.36935 * 120.63675 * 111.37507 * 16 15 13 18 18 H 1.07995 * 120.00595 * 150.45828 * 17 16 15 19 19 C 1.38813 * 119.99340 * 330.45639 * 17 16 15 20 20 N 1.31621 * 120.00585 * 349.76489 * 19 17 16 21 21 Si 1.86803 * 119.99684 * 169.77292 * 19 17 16 22 22 H 1.48504 * 109.47017 * 269.99862 * 21 19 17 23 23 H 1.48492 * 109.47362 * 29.99491 * 21 19 17 24 24 H 1.48503 * 109.47327 * 149.99957 * 21 19 17 25 25 C 1.43425 * 118.72875 * 291.10105 * 16 15 13 26 26 C 1.55335 * 116.23911 * 89.62557 * 25 16 15 27 27 C 1.55190 * 108.87118 * 319.46163 * 26 25 16 28 28 O 1.39640 * 110.56856 * 322.14551 * 27 26 25 29 29 H 1.09004 * 109.47387 * 300.00122 * 1 2 3 30 30 H 1.08997 * 109.47525 * 60.00164 * 1 2 3 31 31 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47387 * 239.99878 * 2 1 3 33 33 H 1.09004 * 109.47139 * 119.99859 * 2 1 3 34 34 H 1.08991 * 109.46667 * 270.02113 * 7 6 5 35 35 H 1.09004 * 109.46982 * 30.02599 * 7 6 5 36 36 H 1.09004 * 109.46551 * 150.02202 * 7 6 5 37 37 H 0.96997 * 119.99659 * 4.66796 * 11 9 8 38 38 H 1.09006 * 109.47136 * 60.00157 * 12 11 9 39 39 H 1.09006 * 109.47043 * 300.00797 * 12 11 9 40 40 H 1.09006 * 110.11002 * 58.79595 * 15 13 12 41 41 H 1.08995 * 110.15104 * 297.24676 * 15 13 12 42 42 H 0.96996 * 120.00017 * 179.97438 * 20 19 17 43 43 H 1.08991 * 108.12813 * 211.38188 * 25 16 15 44 44 H 1.09001 * 108.12630 * 328.08407 * 25 16 15 45 45 H 1.09000 * 109.56727 * 79.27659 * 26 25 16 46 46 H 1.09000 * 109.57010 * 199.64588 * 26 25 16 47 47 H 1.09004 * 109.25681 * 82.42770 * 27 26 25 48 48 H 1.09003 * 109.25242 * 201.90114 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1817 2.1266 -1.0365 5 7 2.6297 3.2823 -0.6973 6 6 2.7731 3.3313 0.6273 7 6 3.2710 4.4993 1.4391 8 6 2.3790 2.1087 1.1039 9 6 2.3531 1.6672 2.5082 10 8 1.4276 1.9874 3.2293 11 7 3.3550 0.9082 2.9945 12 6 3.2801 0.3837 4.3603 13 6 4.5351 -0.4382 4.6606 14 1 5.4073 0.2005 4.5212 15 6 4.4861 -0.8717 6.0695 16 7 5.7087 -1.7119 6.2995 17 6 6.7188 -1.2670 7.1099 18 1 7.3277 -1.9751 7.6523 19 6 6.9602 0.0943 7.2342 20 7 6.3608 0.9453 6.4287 21 14 8.1360 0.7185 8.5447 22 1 7.3837 0.9900 9.7959 23 1 9.1765 -0.3082 8.8057 24 1 8.7824 1.9700 8.0743 25 6 5.7958 -2.9922 5.6589 26 6 6.4439 -3.0111 4.2473 27 6 5.9498 -1.7738 3.4515 28 8 4.6066 -1.5147 3.7316 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3539 4.4341 1.5431 35 1 3.0096 5.4298 0.9351 36 1 2.8092 4.4787 2.4263 37 1 4.1257 0.7093 2.4402 38 1 2.3984 -0.2497 4.4585 39 1 3.2119 1.2129 5.0647 40 1 3.5883 -1.4633 6.2485 41 1 4.5002 -0.0047 6.7298 42 1 6.5292 1.8966 6.5158 43 1 6.3704 -3.6561 6.3046 44 1 4.7875 -3.3969 5.5713 45 1 7.5290 -2.9741 4.3432 46 1 6.1527 -3.9219 3.7240 47 1 6.5486 -0.9059 3.7280 48 1 6.0638 -1.9639 2.3842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073631278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:41 Heat of formation + Delta-G solvation = 43.729130 kcal Electronic energy + Delta-G solvation = -30869.305213 eV Core-core repulsion = 26769.728989 eV Total energy + Delta-G solvation = -4099.576224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.36113 -39.68483 -38.75992 -35.83890 -35.11959 -34.71185 -32.86515 -32.21503 -31.35218 -30.94018 -28.83289 -27.91144 -25.83030 -25.39565 -24.87849 -23.38446 -22.26968 -21.28859 -20.96753 -20.20190 -19.68393 -18.11168 -17.20798 -16.71915 -16.57277 -16.12024 -15.64755 -15.15899 -14.98779 -14.85541 -14.37081 -14.33361 -13.96752 -13.88200 -13.56632 -13.40132 -13.08640 -12.92144 -12.71046 -12.63422 -12.40453 -12.33649 -12.06852 -12.00943 -11.81814 -11.43423 -11.32615 -11.02353 -10.94000 -10.82846 -10.54600 -10.32651 -10.22494 -10.15126 -10.07285 -9.76676 -9.60718 -9.23845 -8.99580 -8.88269 -8.60543 -6.82554 -5.98842 -3.46131 1.16920 1.81306 2.32056 2.55156 3.16559 3.27922 3.35844 3.36307 4.10744 4.32411 4.35979 4.48556 4.54401 4.67023 4.78693 4.80922 5.13048 5.15451 5.20687 5.22387 5.42634 5.55319 5.58997 5.65242 5.69834 5.72868 5.80434 5.81434 5.83719 6.02695 6.12007 6.21532 6.26430 6.30522 6.32747 6.40478 6.58187 6.60156 6.71422 6.78460 6.87173 7.02988 7.26113 7.46006 7.64507 8.01731 8.07414 8.28711 8.30330 9.01082 9.66087 10.21994 11.09650 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.003387 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.054065 B = 8264.620540 C = 9282.762313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.267 5.267 4 N -0.067 5.067 5 N -0.271 5.271 6 C 0.028 3.972 7 C -0.074 4.074 8 C -0.059 4.059 9 C 0.590 3.410 10 O -0.521 6.521 11 N -0.697 5.697 12 C 0.119 3.881 13 C 0.060 3.940 14 H 0.111 0.889 15 C 0.145 3.855 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.068 0.932 19 C 0.006 3.994 20 N -0.912 5.912 21 Si 0.908 3.092 22 H -0.287 1.287 23 H -0.280 1.280 24 H -0.290 1.290 25 C 0.162 3.838 26 C -0.171 4.171 27 C 0.068 3.932 28 O -0.372 6.372 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.404 0.596 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.018 0.982 41 H 0.106 0.894 42 H 0.256 0.744 43 H 0.033 0.967 44 H 0.030 0.970 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 -1.412 -10.598 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.065 5.065 4 N -0.046 5.046 5 N -0.136 5.136 6 C -0.112 4.112 7 C -0.133 4.133 8 C -0.194 4.194 9 C 0.371 3.629 10 O -0.395 6.395 11 N -0.347 5.347 12 C -0.004 4.004 13 C 0.002 3.998 14 H 0.128 0.872 15 C 0.020 3.980 16 N -0.308 5.308 17 C -0.379 4.379 18 H 0.085 0.915 19 C -0.192 4.192 20 N -0.557 5.557 21 Si 0.738 3.262 22 H -0.214 1.214 23 H -0.206 1.206 24 H -0.216 1.216 25 C 0.033 3.967 26 C -0.212 4.212 27 C -0.010 4.010 28 O -0.291 6.291 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.861 -1.106 -11.619 14.071 hybrid contribution 1.343 0.087 1.407 1.947 sum -6.518 -1.019 -10.212 12.157 Atomic orbital electron populations 1.22165 0.92548 1.04167 1.03926 1.22266 0.96892 0.75966 1.06314 1.47819 1.41657 1.13277 1.03747 1.78132 1.16696 0.98105 1.11711 1.74812 1.15711 1.11136 1.11939 1.22161 1.02774 0.95153 0.91118 1.20202 1.01638 0.93267 0.98177 1.21976 1.12103 0.94869 0.90423 1.16786 0.83165 0.78928 0.84003 1.90850 1.35217 1.55064 1.58377 1.45986 1.21625 1.50158 1.16933 1.21881 0.99668 0.97712 0.81178 1.22398 0.97877 0.87461 0.92090 0.87186 1.20830 0.86800 0.96432 0.93898 1.44009 1.17163 1.17413 1.52256 1.19274 1.09299 0.90877 1.18437 0.91467 1.25050 0.98849 0.96685 0.98607 1.69761 1.46033 1.02048 1.37905 0.86197 0.80577 0.78128 0.81273 1.21373 1.20558 1.21648 1.20370 0.97201 0.88518 0.90622 1.23569 1.00530 0.97284 0.99864 1.22341 0.83645 0.98570 0.96448 1.87481 1.24929 1.54478 1.62182 0.91219 0.91132 0.89383 0.86997 0.87393 0.89912 0.89948 0.90141 0.76191 0.91606 0.89661 0.96425 0.87621 0.93358 0.94906 0.95112 0.92451 0.93204 0.91854 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.11 0.96 6.99 -4.04 -0.03 0.93 16 3 N -0.27 -3.40 3.39 -57.37 -0.19 -3.60 16 4 N -0.07 -0.97 13.14 60.35 0.79 -0.18 16 5 N -0.27 -4.14 12.35 33.51 0.41 -3.73 16 6 C 0.03 0.39 7.30 -82.39 -0.60 -0.21 16 7 C -0.07 -0.85 10.28 36.01 0.37 -0.48 16 8 C -0.06 -0.84 6.74 -82.33 -0.55 -1.40 16 9 C 0.59 8.95 6.83 -12.61 -0.09 8.87 16 10 O -0.52 -9.44 17.11 5.26 0.09 -9.35 16 11 N -0.70 -10.13 5.43 -61.44 -0.33 -10.46 16 12 C 0.12 1.96 5.24 -4.04 -0.02 1.94 16 13 C 0.06 1.12 1.93 -29.39 -0.06 1.07 16 14 H 0.11 2.34 5.11 -51.93 -0.27 2.07 16 15 C 0.15 3.07 4.73 -4.68 -0.02 3.05 16 16 N -0.59 -13.37 2.59 -174.20 -0.45 -13.82 16 17 C -0.25 -6.23 9.61 -15.06 -0.14 -6.37 16 18 H 0.07 1.69 7.84 -52.49 -0.41 1.28 16 19 C 0.01 0.14 5.10 -17.43 -0.09 0.05 16 20 N -0.91 -22.58 9.25 55.49 0.51 -22.07 16 21 Si 0.91 20.18 29.57 -169.99 -5.03 15.16 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.16 3.23 5.33 -4.43 -0.02 3.21 16 26 C -0.17 -3.01 6.75 -24.33 -0.16 -3.18 16 27 C 0.07 1.18 6.38 38.32 0.24 1.42 16 28 O -0.37 -6.60 9.53 -31.93 -0.30 -6.90 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.11 0.96 7.75 -51.93 -0.40 0.56 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 37 H 0.40 5.50 8.31 -40.82 -0.34 5.16 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 2.47 6.13 -51.93 -0.32 2.15 16 42 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 43 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 44 H 0.03 0.60 7.97 -51.93 -0.41 0.18 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.26 6.66 -51.93 -0.35 0.91 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -28.56 388.91 -6.97 -35.53 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.54 Total: 5.65 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.80 Total: 7.90 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.74 Total: -53.86 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.21 Total: -16.25 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.56 -6.97 -35.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073631278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.264 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds