Wall clock time and date at job start Tue Mar 31 2020 20:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46995 * 2 1 4 4 N 1.28708 * 126.03527 * 275.19990 * 3 2 1 5 5 N 1.28514 * 110.63663 * 180.29990 * 4 3 2 6 6 C 1.33321 * 109.43908 * 359.71618 * 5 4 3 7 7 C 1.50705 * 126.81159 * 179.97438 * 6 5 4 8 8 C 1.37004 * 106.37159 * 0.02562 * 6 5 4 9 9 C 1.47234 * 127.18666 * 180.02562 * 8 6 5 10 10 O 1.21619 * 119.99840 * 80.65813 * 9 8 6 11 11 N 1.34776 * 119.99900 * 260.65290 * 9 8 6 12 12 C 1.46497 * 120.00111 * 184.66507 * 11 9 8 13 13 C 1.52998 * 109.47248 * 180.02562 * 12 11 9 14 14 H 1.08996 * 108.45249 * 57.88391 * 13 12 11 15 15 C 1.47485 * 108.55064 * 175.84734 * 13 12 11 16 16 N 1.50116 * 106.48788 * 178.00843 * 15 13 12 17 17 C 1.36935 * 120.63675 * 111.37507 * 16 15 13 18 18 H 1.07995 * 120.00595 * 150.45828 * 17 16 15 19 19 C 1.38813 * 119.99340 * 330.45639 * 17 16 15 20 20 N 1.31621 * 120.00585 * 349.76489 * 19 17 16 21 21 Si 1.86803 * 119.99684 * 169.77292 * 19 17 16 22 22 H 1.48504 * 109.47017 * 269.99862 * 21 19 17 23 23 H 1.48492 * 109.47362 * 29.99491 * 21 19 17 24 24 H 1.48503 * 109.47327 * 149.99957 * 21 19 17 25 25 C 1.43425 * 118.72875 * 291.10105 * 16 15 13 26 26 C 1.55335 * 116.23911 * 89.62557 * 25 16 15 27 27 C 1.55190 * 108.87118 * 319.46163 * 26 25 16 28 28 O 1.39640 * 110.56856 * 322.14551 * 27 26 25 29 29 H 1.09004 * 109.47387 * 300.00122 * 1 2 3 30 30 H 1.08997 * 109.47525 * 60.00164 * 1 2 3 31 31 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47387 * 239.99878 * 2 1 3 33 33 H 1.09004 * 109.47139 * 119.99859 * 2 1 3 34 34 H 1.08991 * 109.46667 * 270.02113 * 7 6 5 35 35 H 1.09004 * 109.46982 * 30.02599 * 7 6 5 36 36 H 1.09004 * 109.46551 * 150.02202 * 7 6 5 37 37 H 0.96997 * 119.99659 * 4.66796 * 11 9 8 38 38 H 1.09006 * 109.47136 * 60.00157 * 12 11 9 39 39 H 1.09006 * 109.47043 * 300.00797 * 12 11 9 40 40 H 1.09006 * 110.11002 * 58.79595 * 15 13 12 41 41 H 1.08995 * 110.15104 * 297.24676 * 15 13 12 42 42 H 0.96996 * 120.00017 * 179.97438 * 20 19 17 43 43 H 1.08991 * 108.12813 * 211.38188 * 25 16 15 44 44 H 1.09001 * 108.12630 * 328.08407 * 25 16 15 45 45 H 1.09000 * 109.56727 * 79.27659 * 26 25 16 46 46 H 1.09000 * 109.57010 * 199.64588 * 26 25 16 47 47 H 1.09004 * 109.25681 * 82.42770 * 27 26 25 48 48 H 1.09003 * 109.25242 * 201.90114 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1817 2.1266 -1.0365 5 7 2.6297 3.2823 -0.6973 6 6 2.7731 3.3313 0.6273 7 6 3.2710 4.4993 1.4391 8 6 2.3790 2.1087 1.1039 9 6 2.3531 1.6672 2.5082 10 8 1.4276 1.9874 3.2293 11 7 3.3550 0.9082 2.9945 12 6 3.2801 0.3837 4.3603 13 6 4.5351 -0.4382 4.6606 14 1 5.4073 0.2005 4.5212 15 6 4.4861 -0.8717 6.0695 16 7 5.7087 -1.7119 6.2995 17 6 6.7188 -1.2670 7.1099 18 1 7.3277 -1.9751 7.6523 19 6 6.9602 0.0943 7.2342 20 7 6.3608 0.9453 6.4287 21 14 8.1360 0.7185 8.5447 22 1 7.3837 0.9900 9.7959 23 1 9.1765 -0.3082 8.8057 24 1 8.7824 1.9700 8.0743 25 6 5.7958 -2.9922 5.6589 26 6 6.4439 -3.0111 4.2473 27 6 5.9498 -1.7738 3.4515 28 8 4.6066 -1.5147 3.7316 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3539 4.4341 1.5431 35 1 3.0096 5.4298 0.9351 36 1 2.8092 4.4787 2.4263 37 1 4.1257 0.7093 2.4402 38 1 2.3984 -0.2497 4.4585 39 1 3.2119 1.2129 5.0647 40 1 3.5883 -1.4633 6.2485 41 1 4.5002 -0.0047 6.7298 42 1 6.5292 1.8966 6.5158 43 1 6.3704 -3.6561 6.3046 44 1 4.7875 -3.3969 5.5713 45 1 7.5290 -2.9741 4.3432 46 1 6.1527 -3.9219 3.7240 47 1 6.5486 -0.9059 3.7280 48 1 6.0638 -1.9639 2.3842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073631278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:40 Heat of formation + Delta-G solvation = 25.129659 kcal Electronic energy + Delta-G solvation = -30870.111747 eV Core-core repulsion = 26769.728989 eV Total energy + Delta-G solvation = -4100.382758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.42115 -41.06028 -40.17937 -36.78547 -36.73393 -36.08402 -34.04200 -33.67752 -32.90366 -31.93580 -30.32850 -28.99318 -27.27872 -27.04131 -25.81656 -24.73659 -23.62957 -22.43542 -22.26347 -21.42442 -21.26104 -19.26545 -18.88803 -17.90085 -17.64875 -17.57511 -16.96334 -16.63185 -16.44983 -16.02890 -15.87538 -15.52490 -15.44097 -14.94114 -14.73413 -14.67484 -14.44807 -14.19513 -13.90361 -13.70322 -13.57325 -13.55026 -13.17251 -13.15300 -13.03927 -12.98483 -12.64525 -12.58217 -12.46956 -12.26377 -12.03310 -11.95559 -11.79754 -11.49701 -11.36324 -11.20835 -11.16505 -10.55401 -10.33000 -10.29939 -10.23804 -8.61341 -7.86782 -5.35655 0.09824 0.77666 1.22889 1.41138 1.49033 1.53123 1.58312 1.97887 2.52571 3.09021 3.16300 3.31555 3.40698 3.53641 3.56650 3.80595 3.82256 4.13520 4.15041 4.22475 4.28650 4.38248 4.41996 4.56189 4.56693 4.60148 4.67850 4.75336 4.76572 4.79280 4.80274 4.88558 4.91904 5.05585 5.09611 5.18332 5.19478 5.20440 5.26287 5.35011 5.36585 5.44802 5.54204 5.69628 6.23626 6.42595 6.52563 6.84815 7.15431 7.22133 7.84507 8.38183 9.18136 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.003387 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.054065 B = 8264.620540 C = 9282.762313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.255 5.255 4 N -0.074 5.074 5 N -0.294 5.294 6 C 0.024 3.976 7 C -0.074 4.074 8 C -0.072 4.072 9 C 0.603 3.397 10 O -0.551 6.551 11 N -0.686 5.686 12 C 0.132 3.868 13 C 0.078 3.922 14 H 0.087 0.913 15 C 0.146 3.854 16 N -0.602 5.602 17 C -0.265 4.265 18 H 0.059 0.941 19 C -0.030 4.030 20 N -0.917 5.917 21 Si 0.959 3.041 22 H -0.290 1.290 23 H -0.278 1.278 24 H -0.294 1.294 25 C 0.156 3.844 26 C -0.165 4.165 27 C 0.070 3.930 28 O -0.365 6.365 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.080 0.920 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.036 0.964 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.035 0.965 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -2.426 -11.898 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.054 5.054 4 N -0.053 5.053 5 N -0.158 5.158 6 C -0.117 4.117 7 C -0.133 4.133 8 C -0.207 4.207 9 C 0.385 3.615 10 O -0.428 6.428 11 N -0.336 5.336 12 C 0.008 3.992 13 C 0.019 3.981 14 H 0.104 0.896 15 C 0.022 3.978 16 N -0.324 5.324 17 C -0.395 4.395 18 H 0.076 0.924 19 C -0.226 4.226 20 N -0.563 5.563 21 Si 0.789 3.211 22 H -0.217 1.217 23 H -0.204 1.204 24 H -0.221 1.221 25 C 0.028 3.972 26 C -0.206 4.206 27 C -0.008 4.008 28 O -0.284 6.284 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.054 0.946 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.961 -2.151 -12.950 15.353 hybrid contribution 1.354 0.308 1.818 2.288 sum -6.607 -1.843 -11.131 13.075 Atomic orbital electron populations 1.22149 0.91751 1.05646 1.02658 1.22695 0.97542 0.74314 1.07862 1.48137 1.40359 1.14087 1.02843 1.78062 1.16820 0.98248 1.12137 1.74796 1.16802 1.11763 1.12458 1.22587 1.02252 0.95789 0.91054 1.20294 1.02241 0.93101 0.97632 1.21809 1.13409 0.95354 0.90148 1.16748 0.82455 0.78144 0.84155 1.90839 1.36403 1.56246 1.59308 1.45806 1.21776 1.49827 1.16190 1.21587 0.98744 0.97040 0.81849 1.21935 0.97741 0.87370 0.91007 0.89563 1.20763 0.86626 0.95463 0.94972 1.44139 1.17106 1.18339 1.52813 1.19380 1.09881 0.91042 1.19157 0.92359 1.25560 1.00151 0.96876 1.00041 1.69890 1.46388 1.01695 1.38322 0.85406 0.79100 0.77287 0.79328 1.21699 1.20355 1.22055 1.20475 0.97736 0.87137 0.91883 1.23489 0.99959 0.98709 0.98395 1.22366 0.82850 0.97297 0.98304 1.87482 1.25212 1.54067 1.61608 0.93438 0.91340 0.86538 0.84317 0.86965 0.88748 0.88549 0.90633 0.75361 0.90967 0.90988 0.95629 0.90205 0.93858 0.95415 0.94536 0.93043 0.90338 0.94624 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 71.98 0.74 -1.61 16 2 C 0.09 1.50 6.99 86.38 0.60 2.10 16 3 N -0.26 -6.14 3.39 -335.42 -1.14 -7.28 16 4 N -0.07 -2.04 13.14 37.02 0.49 -1.55 16 5 N -0.29 -8.73 12.35 -47.88 -0.59 -9.32 16 6 C 0.02 0.65 7.30 42.04 0.31 0.96 16 7 C -0.07 -1.65 10.28 71.24 0.73 -0.91 16 8 C -0.07 -1.99 6.74 40.41 0.27 -1.71 16 9 C 0.60 17.85 6.83 86.61 0.59 18.44 16 10 O -0.55 -19.86 17.11 -4.09 -0.07 -19.93 16 11 N -0.69 -19.26 5.43 -466.56 -2.53 -21.80 16 12 C 0.13 4.26 5.24 86.38 0.45 4.72 16 13 C 0.08 2.87 1.93 28.87 0.06 2.93 16 14 H 0.09 3.67 5.11 -2.39 -0.01 3.66 16 15 C 0.15 6.19 4.73 83.95 0.40 6.59 16 16 N -0.60 -27.36 2.59 -705.06 -1.83 -29.19 16 17 C -0.26 -13.31 9.61 84.03 0.81 -12.50 16 18 H 0.06 2.97 7.84 -2.91 -0.02 2.95 16 19 C -0.03 -1.48 5.10 84.86 0.43 -1.05 16 20 N -0.92 -45.94 9.25 21.65 0.20 -45.74 16 21 Si 0.96 41.70 29.57 68.60 2.03 43.73 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 25 C 0.16 6.05 5.33 87.75 0.47 6.52 16 26 C -0.16 -5.43 6.75 32.15 0.22 -5.22 16 27 C 0.07 2.27 6.38 72.73 0.46 2.73 16 28 O -0.37 -12.22 9.53 -137.18 -1.31 -13.52 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.11 1.71 7.75 -2.38 -0.02 1.70 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.07 1.74 8.02 -2.38 -0.02 1.73 16 37 H 0.41 10.60 8.31 -92.71 -0.77 9.83 16 38 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 40 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.08 3.81 6.13 -2.39 -0.01 3.79 16 42 H 0.25 12.50 8.31 -92.71 -0.77 11.73 16 43 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 44 H 0.04 1.36 7.97 -2.39 -0.02 1.34 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.04 1.38 6.66 -2.38 -0.02 1.36 16 48 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -60.99 388.91 1.99 -58.99 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.21 Total: 23.61 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.54 Total: 22.00 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -5.40 Total: -114.87 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.38 Total: -33.45 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -60.99 1.99 -58.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073631278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.124 kcal (2) G-P(sol) polarization free energy of solvation -60.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds