Wall clock time and date at job start Tue Mar 31 2020 20:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46497 * 2 1 4 4 N 1.28524 * 124.44147 * 270.03660 * 3 2 1 5 5 C 1.31129 * 109.05548 * 179.97438 * 4 3 2 6 6 C 1.40921 * 105.78248 * 359.97438 * 5 4 3 7 7 C 1.47798 * 127.24210 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99586 * 8.10899 * 7 6 5 9 9 N 1.34780 * 120.00024 * 188.11873 * 7 6 5 10 10 C 1.46916 * 120.63147 * 6.15439 * 9 7 6 11 11 C 1.53617 * 108.54373 * 126.37235 * 10 9 7 12 12 C 1.53038 * 109.24320 * 54.85525 * 11 10 9 13 13 N 1.46505 * 109.46237 * 178.49025 * 12 11 10 14 14 C 1.36940 * 119.99831 * 60.06864 * 13 12 11 15 15 H 1.08005 * 119.99895 * 324.32536 * 14 13 12 16 16 C 1.38810 * 120.00134 * 144.32480 * 14 13 12 17 17 N 1.31627 * 119.99966 * 341.88228 * 16 14 13 18 18 Si 1.86795 * 120.00303 * 161.88275 * 16 14 13 19 19 H 1.48501 * 109.47156 * 89.99540 * 18 16 14 20 20 H 1.48492 * 109.47408 * 210.00322 * 18 16 14 21 21 H 1.48506 * 109.46821 * 330.00028 * 18 16 14 22 22 C 1.46500 * 120.00250 * 240.06832 * 13 12 11 23 23 C 1.52994 * 109.47241 * 83.86419 * 22 13 12 24 24 O 1.42905 * 109.47022 * 64.99889 * 23 22 13 25 25 C 1.53040 * 109.53831 * 298.50990 * 12 11 10 26 26 C 1.46931 * 120.62643 * 186.43891 * 9 7 6 27 27 N 1.28592 * 124.44620 * 90.00162 * 3 2 1 28 28 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47710 * 300.00093 * 1 2 3 30 30 H 1.09001 * 109.47301 * 60.00306 * 1 2 3 31 31 H 1.08997 * 109.47303 * 240.00176 * 2 1 3 32 32 H 1.08995 * 109.46933 * 119.99499 * 2 1 3 33 33 H 1.07999 * 127.10659 * 180.26272 * 5 4 3 34 34 H 1.09006 * 109.58627 * 246.20724 * 10 9 7 35 35 H 1.09000 * 109.58779 * 6.63034 * 10 9 7 36 36 H 1.08998 * 109.63599 * 294.86367 * 11 10 9 37 37 H 1.09006 * 109.43649 * 174.72316 * 11 10 9 38 38 H 1.08995 * 109.45274 * 58.52368 * 12 11 10 39 39 H 0.96997 * 119.99666 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46796 * 203.86816 * 22 13 12 41 41 H 1.09001 * 109.46667 * 323.86751 * 22 13 12 42 42 H 1.08993 * 109.47595 * 184.99902 * 23 22 13 43 43 H 1.09003 * 109.47034 * 305.00524 * 23 22 13 44 44 H 0.96703 * 113.99892 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.50030 * 301.41469 * 25 12 11 46 46 H 1.09001 * 109.50065 * 181.31535 * 25 12 11 47 47 H 1.09007 * 109.58561 * 353.36677 * 26 9 7 48 48 H 1.08989 * 109.58636 * 113.65305 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2598 2.0669 -1.0599 5 6 2.6808 3.2590 -0.7120 6 6 2.6839 3.2682 0.6971 7 6 3.0783 4.3833 1.5834 8 8 3.3088 5.4806 1.1138 9 7 3.1824 4.1836 2.9123 10 6 3.0394 2.8361 3.4801 11 6 4.2734 2.5369 4.3447 12 6 4.4387 3.6440 5.3882 13 7 5.5934 3.3448 6.2388 14 6 6.8398 3.2256 5.6841 15 1 6.9550 2.7858 4.7044 16 6 7.9550 3.6701 6.3809 17 7 7.8124 4.5102 7.3841 18 14 9.6580 3.0761 5.8949 19 1 10.2326 3.9965 4.8810 20 1 10.5341 3.0507 7.0936 21 1 9.5609 1.7088 5.3237 22 6 5.4148 3.1729 7.6826 23 6 4.9808 1.7354 7.9753 24 8 6.0325 0.8375 7.6150 25 6 4.6591 4.9839 4.6824 26 6 3.4349 5.3101 3.8211 27 7 2.2606 2.0671 1.0604 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.9620 4.0683 -1.3696 34 1 2.1400 2.7920 4.0944 35 1 2.9702 2.1054 2.6743 36 1 5.1614 2.4960 3.7139 37 1 4.1399 1.5794 4.8483 38 1 3.5402 3.7008 6.0027 39 1 8.5917 4.8205 7.8712 40 1 6.3560 3.3793 8.1922 41 1 4.6499 3.8630 8.0387 42 1 4.7622 1.6310 9.0380 43 1 4.0880 1.5002 7.3959 44 1 5.8265 -0.0938 7.7742 45 1 5.5433 4.9200 4.0484 46 1 4.8000 5.7682 5.4261 47 1 3.6267 6.2123 3.2401 48 1 2.5662 5.4653 4.4608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098362945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:41 Heat of formation + Delta-G solvation = 64.907796 kcal Electronic energy + Delta-G solvation = -30625.426685 eV Core-core repulsion = 26526.768837 eV Total energy + Delta-G solvation = -4098.657848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.79360 -39.73654 -37.50706 -36.12143 -35.13267 -34.61942 -33.00244 -31.87207 -30.95267 -30.26277 -30.14485 -27.70066 -25.71028 -24.65984 -23.87033 -23.17062 -22.36535 -21.65317 -20.71450 -19.98143 -19.02542 -17.58831 -17.04432 -16.84184 -16.56399 -16.10452 -15.73060 -15.21055 -14.84473 -14.79496 -14.53974 -14.34527 -13.79421 -13.70570 -13.33628 -13.27190 -13.05672 -12.81663 -12.63937 -12.50320 -12.28592 -12.03626 -11.94242 -11.83331 -11.39257 -11.13589 -10.95368 -10.84405 -10.67835 -10.58782 -10.53075 -10.36952 -10.07823 -9.87960 -9.80686 -9.69443 -9.56438 -9.40803 -9.05740 -8.34773 -8.32647 -6.47095 -5.65376 -3.20143 1.23431 1.86246 1.93965 3.12946 3.34049 3.46380 3.52712 3.57763 3.79282 4.38854 4.40245 4.59777 4.68132 4.72112 4.91302 5.07921 5.20054 5.23305 5.32544 5.37868 5.49101 5.51313 5.58770 5.61148 5.67681 5.73847 5.86444 5.92980 6.05470 6.06703 6.14028 6.21193 6.31824 6.43236 6.51150 6.60218 6.67144 6.75411 6.87668 6.90086 7.17830 7.26630 7.57753 7.77836 7.93738 7.99150 8.28001 8.48198 8.68558 9.31196 9.95049 10.48529 11.37054 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.003298 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.073426 B = 8488.605595 C = 8951.786464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.146 5.146 4 N -0.291 5.291 5 C 0.032 3.968 6 C -0.035 4.035 7 C 0.603 3.397 8 O -0.537 6.537 9 N -0.587 5.587 10 C 0.090 3.910 11 C -0.137 4.137 12 C 0.176 3.824 13 N -0.572 5.572 14 C -0.228 4.228 15 H 0.056 0.944 16 C 0.011 3.989 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.140 3.860 23 C 0.059 3.941 24 O -0.544 6.544 25 C -0.133 4.133 26 C 0.113 3.887 27 N -0.246 5.246 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.207 0.793 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.251 0.749 40 H 0.111 0.889 41 H 0.034 0.966 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.348 0.652 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 -8.876 -9.889 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 N -0.049 5.049 4 N -0.131 5.131 5 C -0.151 4.151 6 C -0.198 4.198 7 C 0.388 3.612 8 O -0.413 6.413 9 N -0.318 5.318 10 C -0.033 4.033 11 C -0.177 4.177 12 C 0.068 3.932 13 N -0.291 5.291 14 C -0.358 4.358 15 H 0.073 0.927 16 C -0.187 4.187 17 N -0.543 5.543 18 Si 0.728 3.272 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.013 3.987 23 C -0.021 4.021 24 O -0.345 6.345 25 C -0.173 4.173 26 C -0.010 4.010 27 N -0.094 5.094 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.224 0.776 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.128 0.872 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.191 0.809 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.824 -8.915 -10.177 20.819 hybrid contribution 0.900 -0.160 0.099 0.919 sum -14.924 -9.074 -10.078 20.165 Atomic orbital electron populations 1.22185 0.92937 1.03996 1.03781 1.22097 0.96162 0.74308 1.06201 1.48441 1.43533 1.13488 0.99431 1.73971 1.17799 1.05555 1.15755 1.24804 1.01476 0.95150 0.93689 1.23177 1.08434 0.93391 0.94797 1.16743 0.77604 0.85454 0.81393 1.90782 1.51400 1.24256 1.74847 1.47970 1.68645 1.10039 1.05182 1.22556 0.98566 0.83094 0.99132 1.22422 0.96596 1.00280 0.98405 1.20337 0.90671 0.91199 0.90967 1.43731 1.03006 1.80403 1.01917 1.18778 0.82800 1.31918 1.02329 0.92685 1.25007 0.98022 0.96647 0.99008 1.69887 1.28723 1.31868 1.23786 0.86378 0.84768 0.78762 0.77265 1.21758 1.21782 1.20570 1.21095 1.02702 0.88409 0.86456 1.23112 0.89113 0.94958 0.94920 1.86863 1.41831 1.17489 1.88301 1.22307 0.96433 0.99792 0.98804 1.21835 0.98678 0.88812 0.91643 1.74375 1.15766 1.04543 1.14670 0.89466 0.91253 0.91396 0.87146 0.86986 0.77649 0.92067 0.87066 0.91523 0.91610 0.93573 0.93870 0.87159 0.94782 0.96355 0.96151 0.80935 0.90970 0.90860 0.89487 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.13 0.84 7.25 -4.04 -0.03 0.81 16 3 N -0.15 -1.62 3.94 -10.61 -0.04 -1.66 16 4 N -0.29 -3.53 12.01 30.89 0.37 -3.16 16 5 C 0.03 0.41 12.05 -16.84 -0.20 0.21 16 6 C -0.04 -0.52 6.86 -82.68 -0.57 -1.08 16 7 C 0.60 10.09 7.69 -12.35 -0.10 10.00 16 8 O -0.54 -10.16 16.38 5.32 0.09 -10.08 16 9 N -0.59 -9.50 2.97 -173.64 -0.51 -10.02 16 10 C 0.09 1.34 6.16 -3.49 -0.02 1.32 16 11 C -0.14 -2.44 5.32 -26.39 -0.14 -2.58 16 12 C 0.18 3.46 2.59 -67.89 -0.18 3.29 16 13 N -0.57 -13.53 2.34 -165.62 -0.39 -13.91 16 14 C -0.23 -6.13 8.10 -15.06 -0.12 -6.25 16 15 H 0.06 1.52 6.85 -52.48 -0.36 1.16 16 16 C 0.01 0.32 5.00 -17.43 -0.09 0.23 16 17 N -0.90 -25.81 11.21 55.49 0.62 -25.19 16 18 Si 0.90 22.54 29.59 -169.99 -5.03 17.51 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.14 3.21 5.54 -4.04 -0.02 3.18 16 23 C 0.06 1.14 7.38 37.15 0.27 1.42 16 24 O -0.54 -11.25 13.43 -35.23 -0.47 -11.72 16 25 C -0.13 -2.59 5.31 -26.61 -0.14 -2.73 16 26 C 0.11 1.84 6.44 -3.71 -0.02 1.81 16 27 N -0.25 -3.21 8.67 33.42 0.29 -2.92 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.21 2.15 8.06 -52.49 -0.42 1.72 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.11 1.60 4.19 -62.80 -0.26 1.33 16 36 H 0.07 1.36 7.04 -51.93 -0.37 0.99 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.11 2.96 5.32 -51.93 -0.28 2.69 16 41 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.35 5.20 9.12 45.56 0.42 5.62 16 45 H 0.07 1.61 7.71 -51.93 -0.40 1.21 16 46 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 47 H 0.09 1.46 7.00 -51.92 -0.36 1.10 16 48 H 0.06 0.91 8.14 -51.94 -0.42 0.49 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -33.90 386.87 -6.87 -40.77 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.65 Total: 5.42 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -0.97 Total: 9.13 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.34 Total: -56.86 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.39 Total: -21.80 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.90 -6.87 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098362945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.674 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds