Wall clock time and date at job start Tue Mar 31 2020 20:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46497 * 2 1 4 4 N 1.28524 * 124.44147 * 270.03660 * 3 2 1 5 5 C 1.31129 * 109.05548 * 179.97438 * 4 3 2 6 6 C 1.40921 * 105.78248 * 359.97438 * 5 4 3 7 7 C 1.47798 * 127.24210 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99586 * 8.10899 * 7 6 5 9 9 N 1.34780 * 120.00024 * 188.11873 * 7 6 5 10 10 C 1.46916 * 120.63147 * 6.15439 * 9 7 6 11 11 C 1.53617 * 108.54373 * 126.37235 * 10 9 7 12 12 C 1.53038 * 109.24320 * 54.85525 * 11 10 9 13 13 N 1.46505 * 109.46237 * 178.49025 * 12 11 10 14 14 C 1.36940 * 119.99831 * 60.06864 * 13 12 11 15 15 H 1.08005 * 119.99895 * 324.32536 * 14 13 12 16 16 C 1.38810 * 120.00134 * 144.32480 * 14 13 12 17 17 N 1.31627 * 119.99966 * 341.88228 * 16 14 13 18 18 Si 1.86795 * 120.00303 * 161.88275 * 16 14 13 19 19 H 1.48501 * 109.47156 * 89.99540 * 18 16 14 20 20 H 1.48492 * 109.47408 * 210.00322 * 18 16 14 21 21 H 1.48506 * 109.46821 * 330.00028 * 18 16 14 22 22 C 1.46500 * 120.00250 * 240.06832 * 13 12 11 23 23 C 1.52994 * 109.47241 * 83.86419 * 22 13 12 24 24 O 1.42905 * 109.47022 * 64.99889 * 23 22 13 25 25 C 1.53040 * 109.53831 * 298.50990 * 12 11 10 26 26 C 1.46931 * 120.62643 * 186.43891 * 9 7 6 27 27 N 1.28592 * 124.44620 * 90.00162 * 3 2 1 28 28 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47710 * 300.00093 * 1 2 3 30 30 H 1.09001 * 109.47301 * 60.00306 * 1 2 3 31 31 H 1.08997 * 109.47303 * 240.00176 * 2 1 3 32 32 H 1.08995 * 109.46933 * 119.99499 * 2 1 3 33 33 H 1.07999 * 127.10659 * 180.26272 * 5 4 3 34 34 H 1.09006 * 109.58627 * 246.20724 * 10 9 7 35 35 H 1.09000 * 109.58779 * 6.63034 * 10 9 7 36 36 H 1.08998 * 109.63599 * 294.86367 * 11 10 9 37 37 H 1.09006 * 109.43649 * 174.72316 * 11 10 9 38 38 H 1.08995 * 109.45274 * 58.52368 * 12 11 10 39 39 H 0.96997 * 119.99666 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46796 * 203.86816 * 22 13 12 41 41 H 1.09001 * 109.46667 * 323.86751 * 22 13 12 42 42 H 1.08993 * 109.47595 * 184.99902 * 23 22 13 43 43 H 1.09003 * 109.47034 * 305.00524 * 23 22 13 44 44 H 0.96703 * 113.99892 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.50030 * 301.41469 * 25 12 11 46 46 H 1.09001 * 109.50065 * 181.31535 * 25 12 11 47 47 H 1.09007 * 109.58561 * 353.36677 * 26 9 7 48 48 H 1.08989 * 109.58636 * 113.65305 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2598 2.0669 -1.0599 5 6 2.6808 3.2590 -0.7120 6 6 2.6839 3.2682 0.6971 7 6 3.0783 4.3833 1.5834 8 8 3.3088 5.4806 1.1138 9 7 3.1824 4.1836 2.9123 10 6 3.0394 2.8361 3.4801 11 6 4.2734 2.5369 4.3447 12 6 4.4387 3.6440 5.3882 13 7 5.5934 3.3448 6.2388 14 6 6.8398 3.2256 5.6841 15 1 6.9550 2.7858 4.7044 16 6 7.9550 3.6701 6.3809 17 7 7.8124 4.5102 7.3841 18 14 9.6580 3.0761 5.8949 19 1 10.2326 3.9965 4.8810 20 1 10.5341 3.0507 7.0936 21 1 9.5609 1.7088 5.3237 22 6 5.4148 3.1729 7.6826 23 6 4.9808 1.7354 7.9753 24 8 6.0325 0.8375 7.6150 25 6 4.6591 4.9839 4.6824 26 6 3.4349 5.3101 3.8211 27 7 2.2606 2.0671 1.0604 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.9620 4.0683 -1.3696 34 1 2.1400 2.7920 4.0944 35 1 2.9702 2.1054 2.6743 36 1 5.1614 2.4960 3.7139 37 1 4.1399 1.5794 4.8483 38 1 3.5402 3.7008 6.0027 39 1 8.5917 4.8205 7.8712 40 1 6.3560 3.3793 8.1922 41 1 4.6499 3.8630 8.0387 42 1 4.7622 1.6310 9.0380 43 1 4.0880 1.5002 7.3959 44 1 5.8265 -0.0938 7.7742 45 1 5.5433 4.9200 4.0484 46 1 4.8000 5.7682 5.4261 47 1 3.6267 6.2123 3.2401 48 1 2.5662 5.4653 4.4608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098362945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:40 Heat of formation + Delta-G solvation = 39.984326 kcal Electronic energy + Delta-G solvation = -30626.507448 eV Core-core repulsion = 26526.768837 eV Total energy + Delta-G solvation = -4099.738611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.74178 -41.07093 -39.06253 -37.64531 -36.26079 -35.81533 -34.19495 -33.51528 -32.18942 -31.84954 -31.18671 -29.42022 -27.02512 -25.93239 -25.03518 -24.59052 -23.71559 -22.55616 -22.15729 -21.59520 -20.41958 -18.55798 -18.37258 -18.15107 -17.81018 -17.72537 -17.04180 -16.73735 -16.15596 -15.98684 -15.96235 -15.58901 -15.21672 -15.03767 -14.85969 -14.54306 -14.40619 -14.04340 -13.76135 -13.65455 -13.55475 -13.13967 -13.05813 -12.98192 -12.88940 -12.71465 -12.62784 -12.37274 -12.30314 -12.17267 -11.95468 -11.74007 -11.58442 -11.52215 -11.38610 -11.22471 -10.98499 -10.58763 -10.51027 -10.37330 -9.66374 -8.43494 -7.71592 -5.28435 0.17836 0.87585 1.17663 1.43399 1.45866 1.54382 1.91700 2.13515 2.56749 2.82483 3.38802 3.52761 3.60046 3.86759 3.90951 3.94886 3.98420 4.06682 4.21683 4.25565 4.27940 4.38552 4.46001 4.55565 4.60480 4.61900 4.70027 4.72825 4.77598 4.82062 4.89050 4.91372 4.96397 5.04520 5.12002 5.15183 5.18752 5.23147 5.44295 5.59286 5.62099 5.74099 5.76046 5.92348 6.30113 6.57489 6.91275 7.10764 7.24402 7.31405 8.00980 8.47240 9.25337 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.003298 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.073426 B = 8488.605595 C = 8951.786464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.133 5.133 4 N -0.293 5.293 5 C 0.028 3.972 6 C -0.062 4.062 7 C 0.602 3.398 8 O -0.567 6.567 9 N -0.591 5.591 10 C 0.101 3.899 11 C -0.123 4.123 12 C 0.172 3.828 13 N -0.584 5.584 14 C -0.217 4.217 15 H 0.041 0.959 16 C -0.038 4.038 17 N -0.923 5.923 18 Si 0.943 3.057 19 H -0.292 1.292 20 H -0.294 1.294 21 H -0.280 1.280 22 C 0.133 3.867 23 C 0.069 3.931 24 O -0.577 6.577 25 C -0.122 4.122 26 C 0.122 3.878 27 N -0.245 5.245 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.221 0.779 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.374 0.626 45 H 0.032 0.968 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.372 -11.158 -10.470 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.001 4.001 3 N -0.037 5.037 4 N -0.134 5.134 5 C -0.154 4.154 6 C -0.223 4.223 7 C 0.388 3.612 8 O -0.445 6.445 9 N -0.322 5.322 10 C -0.022 4.022 11 C -0.163 4.163 12 C 0.066 3.934 13 N -0.303 5.303 14 C -0.348 4.348 15 H 0.059 0.941 16 C -0.233 4.233 17 N -0.569 5.569 18 Si 0.774 3.226 19 H -0.219 1.219 20 H -0.220 1.220 21 H -0.205 1.205 22 C 0.007 3.993 23 C -0.011 4.011 24 O -0.381 6.381 25 C -0.162 4.162 26 C 0.000 4.000 27 N -0.094 5.094 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.237 0.763 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.220 0.780 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.287 -11.234 -10.761 24.009 hybrid contribution 1.575 0.426 0.236 1.648 sum -16.713 -10.809 -10.526 22.515 Atomic orbital electron populations 1.22162 0.91754 1.05575 1.02700 1.22678 0.97113 0.72187 1.08154 1.49015 1.41623 1.14423 0.98683 1.73994 1.17938 1.05390 1.16028 1.25088 1.01173 0.95836 0.93322 1.22873 1.10677 0.93615 0.95119 1.17008 0.76930 0.85703 0.81558 1.90756 1.52766 1.25659 1.75364 1.48042 1.68510 1.10403 1.05217 1.22565 0.97855 0.82595 0.99211 1.22229 0.96680 0.99786 0.97611 1.20538 0.90024 0.91638 0.91241 1.43898 1.03022 1.80760 1.02668 1.18790 0.84410 1.30143 1.01442 0.94138 1.25513 1.00413 0.97625 0.99776 1.70012 1.28705 1.33317 1.24895 0.85651 0.82159 0.78172 0.76647 1.21924 1.22046 1.20505 1.21054 1.01180 0.91397 0.85646 1.22882 0.89074 0.92323 0.96799 1.86780 1.43001 1.19677 1.88692 1.22128 0.96465 0.99516 0.98140 1.21693 0.98129 0.88714 0.91462 1.74235 1.15613 1.04115 1.15474 0.86552 0.92382 0.92343 0.85080 0.85257 0.76275 0.89364 0.86123 0.94900 0.90906 0.91207 0.94571 0.91134 0.93731 0.93779 0.94011 0.77985 0.94914 0.92511 0.90281 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.24 71.98 0.74 -0.44 16 2 C 0.12 1.10 7.25 86.38 0.63 1.72 16 3 N -0.13 -2.62 3.94 -187.49 -0.74 -3.36 16 4 N -0.29 -6.56 12.01 -56.17 -0.67 -7.24 16 5 C 0.03 0.69 12.05 85.46 1.03 1.72 16 6 C -0.06 -1.75 6.86 42.24 0.29 -1.46 16 7 C 0.60 19.85 7.69 86.77 0.67 20.51 16 8 O -0.57 -21.64 16.38 -3.89 -0.06 -21.71 16 9 N -0.59 -18.46 2.97 -821.54 -2.44 -20.90 16 10 C 0.10 2.76 6.16 86.51 0.53 3.30 16 11 C -0.12 -4.22 5.32 30.81 0.16 -4.05 16 12 C 0.17 6.61 2.59 45.02 0.12 6.73 16 13 N -0.58 -27.63 2.34 -677.89 -1.58 -29.21 16 14 C -0.22 -11.86 8.10 84.03 0.68 -11.18 16 15 H 0.04 2.32 6.85 -2.91 -0.02 2.30 16 16 C -0.04 -2.16 5.00 84.86 0.42 -1.74 16 17 N -0.92 -54.60 11.21 21.65 0.24 -54.36 16 18 Si 0.94 47.41 29.59 68.60 2.03 49.44 16 19 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 20 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 21 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 22 C 0.13 6.04 5.54 86.38 0.48 6.52 16 23 C 0.07 2.50 7.38 71.98 0.53 3.03 16 24 O -0.58 -22.88 13.43 -148.98 -2.00 -24.88 16 25 C -0.12 -4.82 5.31 30.67 0.16 -4.66 16 26 C 0.12 3.90 6.44 86.36 0.56 4.46 16 27 N -0.25 -5.88 8.67 -48.17 -0.42 -6.29 16 28 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.22 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.12 3.17 4.19 -16.45 -0.07 3.10 16 36 H 0.03 1.34 7.04 -2.39 -0.02 1.32 16 37 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.07 2.38 7.87 -2.39 -0.02 2.36 16 39 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.07 3.85 5.32 -2.39 -0.01 3.84 16 41 H 0.04 1.87 8.05 -2.39 -0.02 1.85 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.37 10.26 9.12 -74.06 -0.68 9.58 16 45 H 0.03 1.52 7.71 -2.39 -0.02 1.50 16 46 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.08 2.67 7.00 -2.38 -0.02 2.66 16 48 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -75.66 386.87 1.60 -74.06 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.25 Total: 19.98 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 7.00 Total: 24.46 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -5.61 Total: -121.35 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.06 Total: -46.58 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -75.66 1.60 -74.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098362945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.047 kcal (2) G-P(sol) polarization free energy of solvation -75.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds