Wall clock time and date at job start Tue Mar 31 2020 19:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99861 * 2 1 4 4 H 1.08997 * 109.47339 * 330.00735 * 3 2 1 5 5 C 1.53000 * 109.46666 * 90.00430 * 3 2 1 6 6 C 1.53003 * 109.47193 * 209.99905 * 3 2 1 7 7 C 1.50705 * 109.46413 * 65.00259 * 6 3 2 8 8 O 1.21276 * 120.00374 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99371 * 179.97438 * 7 6 3 10 10 C 1.47019 * 125.65277 * 359.97438 * 9 7 6 11 11 C 1.54321 * 107.27531 * 178.97403 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09001 * 111.00741 * 277.51995 * 12 11 10 14 14 N 1.46506 * 111.00374 * 153.66359 * 12 11 10 15 15 C 1.35305 * 125.86870 * 326.45437 * 14 12 11 16 16 C 1.35348 * 106.17780 * 180.02562 * 15 14 12 17 17 C 1.50694 * 126.75332 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47213 * 94.99905 * 17 16 15 19 19 C 1.36933 * 120.00097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00470 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00184 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99567 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00406 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46915 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47263 * 119.99823 * 23 21 19 26 26 H 1.48497 * 109.47587 * 240.00475 * 23 21 19 27 27 N 1.33769 * 106.49327 * 359.97438 * 16 15 14 28 28 N 1.28635 * 108.88572 * 359.74092 * 27 16 15 29 29 C 1.47431 * 125.64579 * 180.02562 * 9 7 6 30 30 H 1.09002 * 109.46966 * 59.99085 * 1 2 3 31 31 H 1.09000 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46477 * 299.99513 * 1 2 3 33 33 H 1.09005 * 109.47470 * 59.99688 * 5 3 2 34 34 H 1.08999 * 109.47296 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47309 * 299.99739 * 5 3 2 36 36 H 1.09003 * 109.47136 * 305.00773 * 6 3 2 37 37 H 1.08996 * 109.46929 * 185.00162 * 6 3 2 38 38 H 1.09001 * 109.88251 * 59.55144 * 10 9 7 39 39 H 1.09004 * 109.88394 * 298.39057 * 10 9 7 40 40 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 41 41 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 42 42 H 1.08011 * 126.91266 * 359.97438 * 15 14 12 43 43 H 1.09005 * 109.47245 * 214.99577 * 17 16 15 44 44 H 1.08996 * 109.47439 * 335.00109 * 17 16 15 45 45 H 0.96998 * 119.99650 * 0.02562 * 18 17 16 46 46 H 0.97002 * 119.99779 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36190 * 322.93058 * 29 9 7 48 48 H 1.08998 * 110.36491 * 85.14737 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3590 1.2633 -0.7212 7 6 3.1415 0.9237 -2.1733 8 8 2.0185 0.7345 -2.5903 9 7 4.1951 0.8312 -3.0087 10 6 5.6030 1.0365 -2.6384 11 6 6.4494 0.8028 -3.9074 12 6 5.5245 -0.0762 -4.7902 13 1 5.5915 -1.1254 -4.5023 14 7 5.8353 0.0972 -6.2113 15 6 6.2610 1.2407 -6.7960 16 6 6.4236 0.9550 -8.1090 17 6 6.8848 1.9013 -9.1873 18 7 8.3303 1.7575 -9.3777 19 6 8.9771 2.5209 -10.3125 20 1 8.4218 3.2293 -10.9093 21 6 10.3466 2.3842 -10.4933 22 7 11.0234 1.5205 -9.7663 23 14 11.2289 3.4251 -11.7691 24 1 10.2495 4.3109 -12.4483 25 1 12.2650 4.2535 -11.1015 26 1 11.8735 2.5389 -12.7712 27 7 6.0942 -0.3325 -8.2611 28 7 5.7558 -0.8137 -7.1172 29 6 4.1265 0.5085 -4.4457 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 2.8830 1.0773 1.9564 34 1 2.6615 2.7668 1.4427 35 1 1.2570 1.8013 1.9564 36 1 3.9932 0.5051 -0.2618 37 1 3.8427 2.2371 -0.6443 38 1 5.8904 0.3245 -1.8647 39 1 5.7471 2.0555 -2.2792 40 1 6.6708 1.7482 -4.4028 41 1 7.3697 0.2715 -3.6648 42 1 6.4351 2.1907 -6.3125 43 1 6.3706 1.6681 -10.1197 44 1 6.6573 2.9259 -8.8933 45 1 8.8290 1.1210 -8.8419 46 1 11.9803 1.4247 -9.8929 47 1 3.3495 -0.2330 -4.6311 48 1 3.9366 1.4100 -5.0282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098640615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:11 Heat of formation + Delta-G solvation = 13.487935 kcal Electronic energy + Delta-G solvation = -28667.732426 eV Core-core repulsion = 24566.844846 eV Total energy + Delta-G solvation = -4100.887581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.32687 -41.27605 -39.42293 -38.37049 -36.81707 -35.26120 -33.88715 -33.64109 -31.85186 -31.59774 -30.30575 -28.72928 -27.65891 -27.45566 -25.29786 -24.81512 -23.86875 -22.44721 -22.24317 -21.62513 -20.36762 -19.37655 -18.60727 -18.21047 -17.74436 -17.33996 -17.00598 -16.59882 -16.51955 -16.01870 -15.94447 -15.60545 -15.46126 -15.28802 -15.05846 -14.71677 -14.29213 -14.23700 -14.01519 -13.73501 -13.53821 -13.42647 -13.16340 -13.05550 -12.96962 -12.89767 -12.80244 -12.78366 -12.56951 -12.32437 -12.02958 -12.02524 -11.88620 -11.78826 -11.65533 -11.13136 -10.96554 -10.93189 -10.53658 -10.25269 -9.80825 -9.00571 -7.92123 -5.22294 0.54336 1.12590 1.44419 1.51742 1.53358 1.59318 1.63146 1.94576 2.60663 2.87917 3.00293 3.16084 3.36690 3.43796 3.60575 3.66995 3.82765 3.86503 3.93090 4.09171 4.19837 4.21482 4.25079 4.29307 4.36361 4.46201 4.50232 4.56725 4.56836 4.60891 4.68941 4.76184 4.80558 4.83074 4.86846 4.90481 4.97029 5.04426 5.08419 5.12041 5.18734 5.33862 5.53057 5.63775 6.27770 6.28480 6.37250 7.07669 7.34848 7.48185 8.05668 8.31940 9.31881 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.001827 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.973659 B =15321.264623 C =15749.134678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.403 6.403 3 C 0.090 3.910 4 H 0.054 0.946 5 C -0.168 4.168 6 C -0.127 4.127 7 C 0.527 3.473 8 O -0.578 6.578 9 N -0.619 5.619 10 C 0.104 3.896 11 C -0.136 4.136 12 C 0.127 3.873 13 H 0.136 0.864 14 N -0.275 5.275 15 C -0.014 4.014 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.738 5.738 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.298 1.298 27 N -0.297 5.297 28 N -0.113 5.113 29 C 0.107 3.893 30 H 0.030 0.970 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.228 0.772 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.069 0.931 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.445 3.195 29.351 33.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.322 6.322 3 C 0.032 3.968 4 H 0.072 0.928 5 C -0.225 4.225 6 C -0.166 4.166 7 C 0.318 3.682 8 O -0.457 6.457 9 N -0.354 5.354 10 C -0.017 4.017 11 C -0.174 4.174 12 C 0.025 3.975 13 H 0.153 0.847 14 N -0.069 5.069 15 C -0.166 4.166 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.381 5.381 19 C -0.374 4.374 20 H 0.102 0.898 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.226 1.226 27 N -0.163 5.163 28 N -0.091 5.091 29 C -0.018 4.018 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.244 0.756 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.385 1.579 28.779 33.659 hybrid contribution 0.653 0.958 -0.781 1.398 sum -16.732 2.537 27.998 32.715 Atomic orbital electron populations 1.22739 0.80442 1.02917 0.99856 1.87837 1.20634 1.28604 1.95175 1.22018 0.93679 0.84781 0.96362 0.92805 1.22244 1.02927 1.02774 0.94555 1.21949 0.99180 1.06933 0.88573 1.21029 0.82697 0.75598 0.88871 1.90713 1.24759 1.51534 1.78664 1.48452 1.08384 1.70355 1.08211 1.22363 0.77266 1.05124 0.96998 1.23219 0.98727 1.00980 0.94522 1.23077 0.96590 1.04534 0.73327 0.84661 1.47325 1.42384 1.07264 1.09927 1.23694 1.04921 0.94834 0.93123 1.22307 1.06004 0.93055 0.96023 1.18976 0.84163 0.93993 0.92140 1.42499 1.02866 1.47561 1.45143 1.19732 0.91049 1.14543 1.12065 0.89798 1.25623 0.97477 1.01379 1.02420 1.69860 1.07208 1.40341 1.44824 0.85003 0.78377 0.77755 0.78167 1.18668 1.21752 1.22560 1.75045 1.15191 1.10209 1.15886 1.78207 1.21249 1.17086 0.92535 1.22315 0.95517 1.00512 0.83442 0.95140 0.89567 0.92732 0.91160 0.89381 0.92355 0.85983 0.83956 0.87763 0.87111 0.88061 0.86562 0.75552 0.95476 0.91762 0.79736 0.94084 0.91249 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.82 113.37 1.23 1.79 16 2 O -0.40 -7.43 9.58 -135.21 -1.30 -8.73 16 3 C 0.09 1.11 2.27 30.60 0.07 1.18 16 4 H 0.05 0.80 7.60 -2.39 -0.02 0.78 16 5 C -0.17 -1.11 9.53 71.98 0.69 -0.42 16 6 C -0.13 -1.07 4.60 29.85 0.14 -0.93 16 7 C 0.53 8.96 7.73 87.66 0.68 9.64 16 8 O -0.58 -15.65 15.68 10.76 0.17 -15.48 16 9 N -0.62 -8.09 3.33 -810.79 -2.70 -10.78 16 10 C 0.10 0.48 6.49 86.73 0.56 1.04 16 11 C -0.14 -1.14 6.37 31.78 0.20 -0.94 16 12 C 0.13 2.06 4.10 46.56 0.19 2.25 16 13 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 14 N -0.28 -7.20 3.38 -319.76 -1.08 -8.28 16 15 C -0.01 -0.39 10.59 83.49 0.88 0.49 16 16 C -0.04 -1.33 6.61 41.59 0.28 -1.05 16 17 C 0.24 9.76 6.82 85.63 0.58 10.34 16 18 N -0.74 -38.45 5.59 -347.17 -1.94 -40.40 16 19 C -0.24 -13.54 9.99 84.04 0.84 -12.70 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 22 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 23 Si 0.98 46.03 29.55 68.60 2.03 48.05 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 27 N -0.30 -12.37 12.41 -48.61 -0.60 -12.97 16 28 N -0.11 -4.01 13.16 37.02 0.49 -3.52 16 29 C 0.11 1.87 6.62 87.03 0.58 2.45 16 30 H 0.03 0.54 8.08 -2.39 -0.02 0.52 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 33 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.06 0.43 7.87 -2.39 -0.02 0.41 16 36 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.10 0.07 8.14 -2.39 -0.02 0.06 16 39 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.10 0.81 6.39 -2.39 -0.02 0.79 16 41 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.23 4.13 7.03 -2.90 -0.02 4.11 16 43 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.37 21.13 7.66 -92.71 -0.71 20.42 16 46 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 47 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -84.93 399.49 2.98 -81.95 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.25 Total: 20.88 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 7.38 Total: 9.17 kcal Atomic # 7 Polarization: -130.29 SS G_CDS: -5.55 Total: -135.84 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.13 Total: -24.21 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -84.93 2.98 -81.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098640615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.438 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds