Wall clock time and date at job start Tue Mar 31 2020 19:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99674 * 2 1 4 4 H 1.08993 * 109.46963 * 30.00398 * 3 2 1 5 5 C 1.53004 * 109.47170 * 269.99914 * 3 2 1 6 6 C 1.53007 * 109.46495 * 150.00221 * 3 2 1 7 7 C 1.50695 * 109.47019 * 294.99733 * 6 3 2 8 8 O 1.21283 * 120.00238 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99686 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64857 * 0.03317 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64625 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46960 * 299.99575 * 1 2 3 32 32 H 1.09004 * 109.47094 * 59.99514 * 1 2 3 33 33 H 1.09003 * 109.47210 * 300.00542 * 5 3 2 34 34 H 1.08993 * 109.47034 * 60.00591 * 5 3 2 35 35 H 1.08996 * 109.46872 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.46681 * 174.99855 * 6 3 2 37 37 H 1.08999 * 109.47209 * 55.00328 * 6 3 2 38 38 H 1.08993 * 110.37184 * 36.99021 * 10 9 7 39 39 H 1.09004 * 110.36546 * 274.66585 * 10 9 7 40 40 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 41 41 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 42 42 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 43 43 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 44 44 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 45 45 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 46 46 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.87987 * 61.68287 * 29 9 7 48 48 H 1.09002 * 109.88123 * 300.51640 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3590 1.2632 0.7213 7 6 3.1417 0.9235 2.1733 8 8 2.0187 0.7335 2.5901 9 7 4.1954 0.8299 3.0084 10 6 5.6072 1.0347 2.6367 11 6 6.3113 1.4334 3.9577 12 6 5.5700 0.5405 4.9876 13 1 5.9997 -0.4610 5.0096 14 7 5.6059 1.1473 6.3204 15 6 5.5831 2.4734 6.5887 16 6 5.6313 2.5863 7.9366 17 6 5.6303 3.8644 8.7351 18 7 4.2610 4.1807 9.1488 19 6 4.0121 5.3045 9.8906 20 1 4.8254 5.9578 10.1703 21 6 2.7148 5.6039 10.2831 22 7 1.7239 4.8073 9.9426 23 14 2.3752 7.1373 11.2944 24 1 2.0988 8.2786 10.3855 25 1 1.1971 6.9034 12.1677 26 1 3.5598 7.4488 12.1341 27 7 5.6813 1.3402 8.4206 28 7 5.6645 0.5107 7.4376 29 6 4.1270 0.5079 4.4413 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.8829 1.0775 -1.9564 34 1 1.2569 1.8016 -1.9563 35 1 2.6614 2.7670 -1.4425 36 1 3.8427 2.2369 0.6443 37 1 3.9932 0.5051 0.2617 38 1 5.6940 1.8365 1.9035 39 1 6.0335 0.1119 2.2431 40 1 6.1607 2.4904 4.1771 41 1 7.3733 1.1905 3.9230 42 1 5.5364 3.2796 5.8716 43 1 6.2574 3.7417 9.6181 44 1 6.0212 4.6763 8.1217 45 1 3.5307 3.5936 8.8978 46 1 0.8173 5.0163 10.2171 47 1 3.7014 -0.4862 4.5779 48 1 3.5178 1.2487 4.9591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098640619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:15 Heat of formation + Delta-G solvation = 42.161563 kcal Electronic energy + Delta-G solvation = -29000.667435 eV Core-core repulsion = 24901.023237 eV Total energy + Delta-G solvation = -4099.644199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.06543 -40.53652 -38.74923 -37.58152 -35.05904 -34.05446 -33.19953 -31.93563 -30.94423 -30.00080 -29.60561 -28.12215 -26.78510 -25.86744 -24.46003 -23.19079 -22.72981 -21.88590 -20.87783 -20.57148 -19.71061 -17.89333 -17.55176 -17.19260 -16.95311 -16.42842 -16.00490 -15.77360 -15.31563 -14.91157 -14.82853 -14.53962 -14.51045 -14.03094 -13.68121 -13.46442 -13.34305 -13.19440 -12.95780 -12.91778 -12.77924 -12.54741 -12.39449 -12.33026 -12.26213 -11.95819 -11.73616 -11.50291 -11.24893 -11.09319 -10.88424 -10.79198 -10.46177 -10.18158 -10.07695 -9.91583 -9.85676 -9.70995 -9.10246 -8.88573 -8.84409 -6.90027 -5.71504 -3.01611 1.73772 2.11084 2.35306 2.66975 2.89586 3.46228 3.46970 3.51938 3.54388 3.67333 3.78173 4.20896 4.27682 4.34511 4.39972 4.58618 4.64700 4.73364 4.76239 4.81891 4.91668 5.00754 5.07259 5.10744 5.11431 5.20373 5.25618 5.28146 5.29408 5.34121 5.44820 5.50121 5.53078 5.54337 5.64061 5.69466 5.75543 5.85617 6.18758 6.39158 6.64539 6.73176 6.78474 6.91629 7.04575 7.72730 7.84329 8.45344 8.81334 9.57030 10.12704 10.48459 11.51130 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.002453 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.132046 B =11413.309604 C =13110.735046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.379 6.379 3 C 0.097 3.903 4 H 0.070 0.930 5 C -0.174 4.174 6 C -0.134 4.134 7 C 0.533 3.467 8 O -0.521 6.521 9 N -0.623 5.623 10 C 0.102 3.898 11 C -0.143 4.143 12 C 0.138 3.862 13 H 0.130 0.870 14 N -0.294 5.294 15 C -0.042 4.042 16 C -0.002 4.002 17 C 0.233 3.767 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.251 5.251 28 N -0.093 5.093 29 C 0.100 3.900 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.186 0.814 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.751 -8.870 -27.630 30.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.297 6.297 3 C 0.039 3.961 4 H 0.088 0.912 5 C -0.232 4.232 6 C -0.173 4.173 7 C 0.322 3.678 8 O -0.395 6.395 9 N -0.360 5.360 10 C -0.021 4.021 11 C -0.182 4.182 12 C 0.034 3.966 13 H 0.148 0.852 14 N -0.088 5.088 15 C -0.192 4.192 16 C -0.140 4.140 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.071 5.071 29 C -0.025 4.025 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.203 0.797 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.244 -10.387 -26.682 29.796 hybrid contribution -0.741 1.809 -0.152 1.961 sum 7.502 -8.578 -26.835 29.154 Atomic orbital electron populations 1.22719 0.80757 1.02572 0.99909 1.87869 1.20036 1.26856 1.94985 1.21810 0.93441 0.86076 0.94777 0.91183 1.22294 1.02766 1.01660 0.96483 1.21836 0.99423 1.04432 0.91654 1.20296 0.83316 0.76730 0.87501 1.90758 1.22598 1.48684 1.77469 1.48412 1.06903 1.71526 1.09148 1.22360 0.80638 1.02068 0.97031 1.23289 1.00821 1.01232 0.92860 1.22497 0.97011 0.99391 0.77698 0.85216 1.47113 1.48807 1.05524 1.07379 1.23260 1.10542 0.86851 0.98591 1.22478 1.04394 0.95608 0.91481 1.18953 0.89944 0.86359 0.94397 1.42310 1.01885 1.28553 1.64333 1.19217 0.92755 0.99771 1.25405 0.90883 1.24770 0.95714 0.99013 1.01431 1.69684 0.99271 1.38296 1.50672 0.86159 0.77483 0.82608 0.79738 1.21754 1.21786 1.20657 1.75114 1.15593 0.99837 1.21280 1.78293 1.20002 1.22016 0.86770 1.22203 0.95214 1.03391 0.81645 0.89935 0.93387 0.94547 0.91640 0.92021 0.91381 0.87506 0.87872 0.89296 0.90197 0.88643 0.87911 0.79663 0.94284 0.94518 0.78093 0.93485 0.89594 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.82 101.05 1.09 1.42 16 2 O -0.38 -4.02 9.58 -49.66 -0.48 -4.49 16 3 C 0.10 0.80 2.27 -26.73 -0.06 0.74 16 4 H 0.07 0.66 7.60 -51.93 -0.39 0.26 16 5 C -0.17 -0.97 9.53 37.16 0.35 -0.62 16 6 C -0.13 -0.90 4.42 -27.88 -0.12 -1.02 16 7 C 0.53 5.71 7.73 -10.99 -0.08 5.63 16 8 O -0.52 -8.03 15.75 -8.87 -0.14 -8.17 16 9 N -0.62 -5.44 3.33 -170.52 -0.57 -6.01 16 10 C 0.10 0.45 6.69 -2.53 -0.02 0.43 16 11 C -0.14 -0.75 6.48 -24.58 -0.16 -0.91 16 12 C 0.14 1.22 3.98 -66.10 -0.26 0.95 16 13 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 14 N -0.29 -4.03 3.28 -52.99 -0.17 -4.20 16 15 C -0.04 -0.63 10.59 -17.04 -0.18 -0.81 16 16 C 0.00 -0.04 6.62 -82.77 -0.55 -0.59 16 17 C 0.23 4.91 6.82 -5.19 -0.04 4.88 16 18 N -0.73 -19.26 5.59 -61.08 -0.34 -19.60 16 19 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 23 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 N -0.25 -5.13 12.41 33.29 0.41 -4.72 16 28 N -0.09 -1.63 13.16 60.35 0.79 -0.83 16 29 C 0.10 1.06 6.62 -3.06 -0.02 1.04 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.04 0.25 7.87 -51.93 -0.41 -0.15 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.11 0.43 7.85 -51.93 -0.41 0.02 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.21 7.48 -51.93 -0.39 -0.18 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 0.55 6.39 -51.93 -0.33 0.22 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.19 2.16 7.01 -52.49 -0.37 1.79 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.39 11.11 7.66 -40.82 -0.31 10.79 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -38.52 398.48 -6.71 -45.23 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.63 Total: 3.87 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.29 Total: 3.64 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.85 Total: -63.83 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.62 Total: -12.67 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.52 -6.71 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098640619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.387 kcal (2) G-P(sol) polarization free energy of solvation -38.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds