Wall clock time and date at job start Tue Mar 31 2020 19:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99674 * 2 1 4 4 H 1.08993 * 109.46963 * 30.00398 * 3 2 1 5 5 C 1.53004 * 109.47170 * 269.99914 * 3 2 1 6 6 C 1.53007 * 109.46495 * 150.00221 * 3 2 1 7 7 C 1.50695 * 109.47019 * 294.99733 * 6 3 2 8 8 O 1.21283 * 120.00238 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99686 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64857 * 0.03317 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64625 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46960 * 299.99575 * 1 2 3 32 32 H 1.09004 * 109.47094 * 59.99514 * 1 2 3 33 33 H 1.09003 * 109.47210 * 300.00542 * 5 3 2 34 34 H 1.08993 * 109.47034 * 60.00591 * 5 3 2 35 35 H 1.08996 * 109.46872 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.46681 * 174.99855 * 6 3 2 37 37 H 1.08999 * 109.47209 * 55.00328 * 6 3 2 38 38 H 1.08993 * 110.37184 * 36.99021 * 10 9 7 39 39 H 1.09004 * 110.36546 * 274.66585 * 10 9 7 40 40 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 41 41 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 42 42 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 43 43 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 44 44 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 45 45 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 46 46 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.87987 * 61.68287 * 29 9 7 48 48 H 1.09002 * 109.88123 * 300.51640 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3590 1.2632 0.7213 7 6 3.1417 0.9235 2.1733 8 8 2.0187 0.7335 2.5901 9 7 4.1954 0.8299 3.0084 10 6 5.6072 1.0347 2.6367 11 6 6.3113 1.4334 3.9577 12 6 5.5700 0.5405 4.9876 13 1 5.9997 -0.4610 5.0096 14 7 5.6059 1.1473 6.3204 15 6 5.5831 2.4734 6.5887 16 6 5.6313 2.5863 7.9366 17 6 5.6303 3.8644 8.7351 18 7 4.2610 4.1807 9.1488 19 6 4.0121 5.3045 9.8906 20 1 4.8254 5.9578 10.1703 21 6 2.7148 5.6039 10.2831 22 7 1.7239 4.8073 9.9426 23 14 2.3752 7.1373 11.2944 24 1 2.0988 8.2786 10.3855 25 1 1.1971 6.9034 12.1677 26 1 3.5598 7.4488 12.1341 27 7 5.6813 1.3402 8.4206 28 7 5.6645 0.5107 7.4376 29 6 4.1270 0.5079 4.4413 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.8829 1.0775 -1.9564 34 1 1.2569 1.8016 -1.9563 35 1 2.6614 2.7670 -1.4425 36 1 3.8427 2.2369 0.6443 37 1 3.9932 0.5051 0.2617 38 1 5.6940 1.8365 1.9035 39 1 6.0335 0.1119 2.2431 40 1 6.1607 2.4904 4.1771 41 1 7.3733 1.1905 3.9230 42 1 5.5364 3.2796 5.8716 43 1 6.2574 3.7417 9.6181 44 1 6.0212 4.6763 8.1217 45 1 3.5307 3.5936 8.8978 46 1 0.8173 5.0163 10.2171 47 1 3.7014 -0.4862 4.5779 48 1 3.5178 1.2487 4.9591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098640619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:14 Heat of formation + Delta-G solvation = 12.988975 kcal Electronic energy + Delta-G solvation = -29001.932454 eV Core-core repulsion = 24901.023237 eV Total energy + Delta-G solvation = -4100.909217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.33808 -41.28491 -39.44305 -38.39224 -36.83593 -35.26459 -33.90505 -33.65675 -31.84014 -31.62269 -30.34010 -28.74150 -27.67700 -27.47753 -25.29247 -24.84041 -23.88321 -22.50718 -22.22397 -21.57411 -20.38636 -19.41248 -18.62976 -18.18403 -17.74934 -17.47364 -16.96994 -16.65628 -16.56993 -16.03703 -15.96725 -15.59511 -15.50160 -15.29174 -15.07670 -14.70742 -14.30330 -14.04097 -14.00402 -13.72707 -13.56814 -13.44294 -13.23833 -13.03447 -12.99017 -12.91396 -12.85727 -12.77892 -12.58489 -12.34781 -12.10165 -12.01665 -11.89207 -11.80825 -11.67767 -11.16038 -10.97320 -10.93745 -10.55544 -10.25783 -9.82956 -9.04016 -7.94479 -5.25541 0.51969 1.17410 1.42503 1.49663 1.51330 1.58909 1.60198 1.92593 2.58468 2.85341 3.04221 3.12588 3.35543 3.42543 3.60438 3.68842 3.81517 3.85796 3.92206 4.10314 4.19175 4.19923 4.24413 4.31975 4.36595 4.44025 4.47089 4.54589 4.56831 4.57429 4.68269 4.73354 4.79722 4.82846 4.85245 4.89760 4.98121 5.03735 5.10426 5.10856 5.18403 5.32767 5.49707 5.63524 6.24543 6.25959 6.37531 7.08830 7.31021 7.47073 8.02527 8.28090 9.29574 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.002453 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.132046 B =11413.309604 C =13110.735046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.401 6.401 3 C 0.087 3.913 4 H 0.047 0.953 5 C -0.166 4.166 6 C -0.124 4.124 7 C 0.521 3.479 8 O -0.584 6.584 9 N -0.619 5.619 10 C 0.100 3.900 11 C -0.133 4.133 12 C 0.131 3.869 13 H 0.152 0.848 14 N -0.277 5.277 15 C -0.016 4.016 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.741 5.741 19 C -0.242 4.242 20 H 0.087 0.913 21 C -0.081 4.081 22 N -0.975 5.975 23 Si 0.981 3.019 24 H -0.282 1.282 25 H -0.300 1.300 26 H -0.265 1.265 27 N -0.296 5.296 28 N -0.109 5.109 29 C 0.102 3.898 30 H 0.088 0.912 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.222 0.778 43 H 0.031 0.969 44 H 0.066 0.934 45 H 0.369 0.631 46 H 0.250 0.750 47 H 0.070 0.930 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.747 -7.703 -30.620 33.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.321 6.321 3 C 0.029 3.971 4 H 0.065 0.935 5 C -0.223 4.223 6 C -0.163 4.163 7 C 0.312 3.688 8 O -0.463 6.463 9 N -0.355 5.355 10 C -0.021 4.021 11 C -0.171 4.171 12 C 0.030 3.970 13 H 0.169 0.831 14 N -0.071 5.071 15 C -0.168 4.168 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.384 5.384 19 C -0.373 4.373 20 H 0.105 0.895 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.809 3.191 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.189 1.189 27 N -0.163 5.163 28 N -0.087 5.087 29 C -0.024 4.024 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.152 0.848 42 H 0.239 0.761 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.199 0.801 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.349 -9.231 -29.702 33.109 hybrid contribution -1.619 1.364 0.685 2.225 sum 9.730 -7.866 -29.017 31.600 Atomic orbital electron populations 1.22734 0.80536 1.02963 0.99727 1.87818 1.20518 1.28546 1.95182 1.22040 0.93757 0.84726 0.96558 0.93465 1.22231 1.02984 1.02836 0.94271 1.21941 0.99117 1.07035 0.88209 1.21180 0.82733 0.75672 0.89178 1.90735 1.25224 1.51551 1.78757 1.48519 1.08784 1.70360 1.07808 1.22771 0.77373 1.04760 0.97186 1.23410 1.02156 1.00234 0.91307 1.22997 0.96477 1.01540 0.76003 0.83081 1.47458 1.46260 1.05226 1.08153 1.23627 1.07452 0.88034 0.97655 1.22306 1.07338 0.94638 0.93082 1.19000 0.87020 0.88419 0.94821 1.42548 1.03620 1.27838 1.64359 1.19717 0.93132 1.00095 1.24373 0.89478 1.25695 0.95671 1.02501 1.03406 1.69875 0.99403 1.40614 1.52736 0.85032 0.77238 0.78752 0.78070 1.20905 1.22704 1.18949 1.75038 1.17358 1.00779 1.23157 1.78176 1.20902 1.22046 0.87602 1.21983 0.95838 1.01291 0.83265 0.89353 0.95625 0.92614 0.90720 0.92457 0.89385 0.83896 0.85395 0.85977 0.87426 0.88690 0.84757 0.76105 0.95105 0.91676 0.80069 0.94162 0.91135 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.82 113.37 1.23 1.91 16 2 O -0.40 -8.49 9.58 -135.18 -1.30 -9.78 16 3 C 0.09 1.34 2.27 30.60 0.07 1.41 16 4 H 0.05 0.92 7.60 -2.39 -0.02 0.90 16 5 C -0.17 -1.42 9.53 71.98 0.69 -0.74 16 6 C -0.12 -1.31 4.42 29.85 0.13 -1.18 16 7 C 0.52 10.75 7.73 87.66 0.68 11.43 16 8 O -0.58 -19.02 15.75 10.76 0.17 -18.85 16 9 N -0.62 -9.63 3.33 -811.78 -2.70 -12.33 16 10 C 0.10 0.38 6.69 86.86 0.58 0.96 16 11 C -0.13 -0.78 6.48 31.99 0.21 -0.58 16 12 C 0.13 2.03 3.98 46.18 0.18 2.22 16 13 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 14 N -0.28 -7.28 3.28 -321.56 -1.05 -8.33 16 15 C -0.02 -0.46 10.59 83.49 0.88 0.42 16 16 C -0.04 -1.35 6.62 41.60 0.28 -1.07 16 17 C 0.24 9.90 6.82 85.63 0.58 10.49 16 18 N -0.74 -39.96 5.59 -347.17 -1.94 -41.90 16 19 C -0.24 -13.82 9.99 84.03 0.84 -12.99 16 20 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 22 N -0.98 -62.93 13.06 21.65 0.28 -62.64 16 23 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 27 N -0.30 -12.42 12.41 -48.60 -0.60 -13.02 16 28 N -0.11 -3.86 13.16 37.02 0.49 -3.37 16 29 C 0.10 2.15 6.62 86.73 0.57 2.73 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.06 0.78 7.87 -2.38 -0.02 0.76 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 35 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.14 0.46 7.85 -2.39 -0.02 0.45 16 37 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 -0.22 7.48 -2.39 -0.02 -0.24 16 39 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 40 H 0.09 0.64 6.39 -2.39 -0.02 0.63 16 41 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.22 4.46 7.01 -2.91 -0.02 4.44 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.37 22.01 7.66 -92.71 -0.71 21.30 16 46 H 0.25 15.61 8.31 -92.71 -0.77 14.83 16 47 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 1.27 8.03 -2.39 -0.02 1.25 16 Total: -1.00 -90.83 398.48 3.02 -87.82 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.26 Total: 22.52 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.39 Total: 10.66 kcal Atomic # 7 Polarization: -136.07 SS G_CDS: -5.53 Total: -141.60 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.13 Total: -28.64 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -90.83 3.02 -87.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098640619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.806 kcal (2) G-P(sol) polarization free energy of solvation -90.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds