Wall clock time and date at job start Tue Mar 31 2020 19:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00030 * 2 1 4 4 H 1.09007 * 109.47099 * 330.00311 * 3 2 1 5 5 C 1.53005 * 109.47129 * 89.99609 * 3 2 1 6 6 C 1.52995 * 109.47468 * 210.00056 * 3 2 1 7 7 C 1.50700 * 109.47108 * 64.99664 * 6 3 2 8 8 O 1.21277 * 119.99954 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99949 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64786 * 359.97438 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.90251 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64696 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.46512 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47204 * 300.00333 * 1 2 3 32 32 H 1.09001 * 109.46960 * 60.00068 * 1 2 3 33 33 H 1.08995 * 109.46723 * 60.00752 * 5 3 2 34 34 H 1.08999 * 109.46837 * 179.97438 * 5 3 2 35 35 H 1.08990 * 109.47271 * 300.00260 * 5 3 2 36 36 H 1.08997 * 109.46988 * 305.00192 * 6 3 2 37 37 H 1.08999 * 109.47112 * 184.99856 * 6 3 2 38 38 H 1.08993 * 110.37184 * 37.06155 * 10 9 7 39 39 H 1.09004 * 110.36546 * 274.73719 * 10 9 7 40 40 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 41 41 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 42 42 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 43 43 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 44 44 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 45 45 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 46 46 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.87987 * 61.61153 * 29 9 7 48 48 H 1.09002 * 109.88123 * 300.44506 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2634 -0.7212 7 6 3.1416 0.9236 -2.1733 8 8 2.0186 0.7344 -2.5903 9 7 4.1952 0.8312 -3.0087 10 6 5.6069 1.0372 -2.6372 11 6 6.4150 0.2454 -3.6955 12 6 5.5744 0.4900 -4.9764 13 1 5.8330 1.4464 -5.4306 14 7 5.7588 -0.6032 -5.9340 15 6 5.9654 -1.9037 -5.6225 16 6 6.0808 -2.5599 -6.8007 17 6 6.3204 -4.0355 -6.9913 18 7 5.0383 -4.7174 -7.1847 19 6 5.0060 -6.0725 -7.3793 20 1 5.9257 -6.6385 -7.3898 21 6 3.7912 -6.7185 -7.5631 22 7 2.6704 -6.0286 -7.5507 23 14 3.7471 -8.5671 -7.8279 24 1 3.6303 -9.2525 -6.5157 25 1 2.5792 -8.9180 -8.6754 26 1 4.9968 -9.0004 -8.5032 27 7 5.9416 -1.6407 -7.7627 28 7 5.7520 -0.4917 -7.2163 29 6 4.1269 0.5093 -4.4417 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8829 1.0776 1.9563 34 1 2.6614 2.7670 1.4425 35 1 1.2569 1.8015 1.9563 36 1 3.9931 0.5052 -0.2617 37 1 3.8426 2.2371 -0.6443 38 1 5.7984 0.6416 -1.6398 39 1 5.8601 2.0965 -2.6812 40 1 6.4495 -0.8154 -3.4473 41 1 7.4203 0.6524 -3.8042 42 1 6.0265 -2.3319 -4.6330 43 1 6.9504 -4.1912 -7.8670 44 1 6.8176 -4.4397 -6.1095 45 1 4.2123 -4.2089 -7.1755 46 1 1.8216 -6.4799 -7.6795 47 1 3.5482 1.2701 -4.9653 48 1 3.6676 -0.4695 -4.5802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098640623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:18 Heat of formation + Delta-G solvation = 42.571067 kcal Electronic energy + Delta-G solvation = -29077.478892 eV Core-core repulsion = 24977.852450 eV Total energy + Delta-G solvation = -4099.626441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.05418 -40.53324 -38.73218 -37.56926 -35.04446 -34.04500 -33.18680 -31.92039 -30.93681 -29.98804 -29.60011 -28.11852 -26.74303 -25.85182 -24.45593 -23.18158 -22.71479 -21.87580 -20.86616 -20.56371 -19.70734 -17.90497 -17.47473 -17.23928 -16.94762 -16.39614 -15.99731 -15.70088 -15.36939 -14.94610 -14.80386 -14.50917 -14.39680 -14.02506 -13.71246 -13.56705 -13.20183 -13.13611 -13.04453 -12.88435 -12.76397 -12.53398 -12.39257 -12.31977 -12.25707 -11.94908 -11.70272 -11.50519 -11.23974 -11.06352 -10.86793 -10.77515 -10.45108 -10.17856 -10.06143 -9.89140 -9.83419 -9.69451 -9.10245 -8.86993 -8.82743 -6.88126 -5.69589 -2.99686 1.74787 2.12055 2.34507 2.67947 2.90744 3.48725 3.50148 3.53426 3.55911 3.67657 3.78714 4.21575 4.27395 4.35027 4.40295 4.58347 4.66349 4.73061 4.76921 4.82083 4.93943 4.98709 5.09522 5.11057 5.13497 5.20820 5.25802 5.29849 5.31207 5.34629 5.45577 5.51634 5.53621 5.60216 5.65737 5.70397 5.76055 5.86498 6.20602 6.40616 6.66163 6.74444 6.79858 6.95867 7.05060 7.74515 7.84463 8.47234 8.82286 9.58902 10.14601 10.50345 11.53060 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.002637 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.545444 B =10614.510606 C =12739.211760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.377 6.377 3 C 0.098 3.902 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.134 4.134 7 C 0.533 3.467 8 O -0.521 6.521 9 N -0.623 5.623 10 C 0.102 3.898 11 C -0.143 4.143 12 C 0.138 3.862 13 H 0.130 0.870 14 N -0.294 5.294 15 C -0.042 4.042 16 C -0.002 4.002 17 C 0.233 3.767 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.251 5.251 28 N -0.093 5.093 29 C 0.099 3.901 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.187 0.813 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.386 0.614 46 H 0.255 0.745 47 H 0.085 0.915 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 22.540 20.699 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.039 3.961 4 H 0.086 0.914 5 C -0.232 4.232 6 C -0.174 4.174 7 C 0.322 3.678 8 O -0.395 6.395 9 N -0.360 5.360 10 C -0.021 4.021 11 C -0.182 4.182 12 C 0.034 3.966 13 H 0.148 0.852 14 N -0.088 5.088 15 C -0.192 4.192 16 C -0.140 4.140 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.072 5.072 29 C -0.025 4.025 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.304 23.079 19.297 30.548 hybrid contribution -0.475 -1.252 0.832 1.576 sum 4.830 21.828 20.129 30.082 Atomic orbital electron populations 1.22723 0.80714 1.02805 0.99669 1.87907 1.20063 1.26612 1.94934 1.21795 0.93377 0.86200 0.94702 0.91372 1.22297 1.02790 1.01565 0.96572 1.21839 0.99486 1.04363 0.91695 1.20299 0.83351 0.76723 0.87474 1.90755 1.22648 1.48646 1.77460 1.48414 1.06929 1.71489 1.09157 1.22362 0.80041 1.00410 0.99308 1.23290 0.99473 1.03299 0.92157 1.22491 0.96166 0.89686 0.88232 0.85245 1.47106 1.47781 1.07440 1.06521 1.23272 1.09822 0.83817 1.02255 1.22477 1.04451 0.98600 0.88427 1.18953 0.90797 0.80961 0.98940 1.42308 1.02133 1.05299 1.87334 1.19215 0.92865 0.83437 1.41631 0.90888 1.24770 0.95367 0.98033 1.02756 1.69684 0.97012 1.34561 1.56650 0.86160 0.76990 0.85301 0.77539 1.21738 1.21796 1.20669 1.75109 1.14965 0.94933 1.26812 1.78285 1.19995 1.19963 0.88907 1.22205 0.95081 1.03671 0.81515 0.89740 0.94608 0.93517 0.91554 0.91504 0.92027 0.87790 0.87593 0.89251 0.90236 0.88610 0.87918 0.79641 0.94294 0.94512 0.78089 0.93488 0.89635 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.82 101.05 1.09 1.45 16 2 O -0.38 -4.31 9.58 -49.64 -0.48 -4.79 16 3 C 0.10 0.81 2.27 -26.73 -0.06 0.75 16 4 H 0.07 0.60 7.60 -51.92 -0.39 0.20 16 5 C -0.17 -0.97 9.53 37.16 0.35 -0.61 16 6 C -0.13 -0.91 4.42 -27.89 -0.12 -1.03 16 7 C 0.53 5.72 7.73 -10.98 -0.08 5.63 16 8 O -0.52 -8.04 15.75 -8.85 -0.14 -8.18 16 9 N -0.62 -5.45 3.33 -170.52 -0.57 -6.02 16 10 C 0.10 0.45 6.69 -2.53 -0.02 0.43 16 11 C -0.14 -0.78 6.49 -24.58 -0.16 -0.94 16 12 C 0.14 1.22 3.98 -66.10 -0.26 0.96 16 13 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 14 N -0.29 -4.07 3.28 -52.99 -0.17 -4.24 16 15 C -0.04 -0.63 10.59 -17.04 -0.18 -0.81 16 16 C 0.00 -0.04 6.62 -82.77 -0.55 -0.59 16 17 C 0.23 4.97 6.82 -5.19 -0.04 4.93 16 18 N -0.73 -19.44 5.59 -61.08 -0.34 -19.78 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -29.40 13.06 55.49 0.72 -28.67 16 23 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 N -0.25 -5.16 12.41 33.29 0.41 -4.75 16 28 N -0.09 -1.64 13.16 60.35 0.79 -0.85 16 29 C 0.10 1.06 6.62 -3.06 -0.02 1.04 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.26 7.87 -51.93 -0.41 -0.14 16 32 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.34 7.87 -51.93 -0.41 -0.06 16 36 H 0.10 0.60 7.85 -51.93 -0.41 0.19 16 37 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.24 7.48 -51.93 -0.39 -0.14 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.59 6.39 -51.93 -0.33 0.26 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.19 2.24 7.01 -52.49 -0.37 1.87 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.39 11.20 7.66 -40.82 -0.31 10.89 16 46 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -38.90 398.49 -6.71 -45.61 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.63 Total: 4.07 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.29 Total: 3.66 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 0.85 Total: -64.31 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.61 Total: -12.96 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.90 -6.71 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098640623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.178 kcal (2) G-P(sol) polarization free energy of solvation -38.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds