Wall clock time and date at job start Tue Mar 31 2020 19:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00030 * 2 1 4 4 H 1.09007 * 109.47099 * 330.00311 * 3 2 1 5 5 C 1.53005 * 109.47129 * 89.99609 * 3 2 1 6 6 C 1.52995 * 109.47468 * 210.00056 * 3 2 1 7 7 C 1.50700 * 109.47108 * 64.99664 * 6 3 2 8 8 O 1.21277 * 119.99954 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99949 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64786 * 359.97438 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.90251 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64696 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.46512 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47204 * 300.00333 * 1 2 3 32 32 H 1.09001 * 109.46960 * 60.00068 * 1 2 3 33 33 H 1.08995 * 109.46723 * 60.00752 * 5 3 2 34 34 H 1.08999 * 109.46837 * 179.97438 * 5 3 2 35 35 H 1.08990 * 109.47271 * 300.00260 * 5 3 2 36 36 H 1.08997 * 109.46988 * 305.00192 * 6 3 2 37 37 H 1.08999 * 109.47112 * 184.99856 * 6 3 2 38 38 H 1.08993 * 110.37184 * 37.06155 * 10 9 7 39 39 H 1.09004 * 110.36546 * 274.73719 * 10 9 7 40 40 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 41 41 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 42 42 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 43 43 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 44 44 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 45 45 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 46 46 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.87987 * 61.61153 * 29 9 7 48 48 H 1.09002 * 109.88123 * 300.44506 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2634 -0.7212 7 6 3.1416 0.9236 -2.1733 8 8 2.0186 0.7344 -2.5903 9 7 4.1952 0.8312 -3.0087 10 6 5.6069 1.0372 -2.6372 11 6 6.4150 0.2454 -3.6955 12 6 5.5744 0.4900 -4.9764 13 1 5.8330 1.4464 -5.4306 14 7 5.7588 -0.6032 -5.9340 15 6 5.9654 -1.9037 -5.6225 16 6 6.0808 -2.5599 -6.8007 17 6 6.3204 -4.0355 -6.9913 18 7 5.0383 -4.7174 -7.1847 19 6 5.0060 -6.0725 -7.3793 20 1 5.9257 -6.6385 -7.3898 21 6 3.7912 -6.7185 -7.5631 22 7 2.6704 -6.0286 -7.5507 23 14 3.7471 -8.5671 -7.8279 24 1 3.6303 -9.2525 -6.5157 25 1 2.5792 -8.9180 -8.6754 26 1 4.9968 -9.0004 -8.5032 27 7 5.9416 -1.6407 -7.7627 28 7 5.7520 -0.4917 -7.2163 29 6 4.1269 0.5093 -4.4417 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8829 1.0776 1.9563 34 1 2.6614 2.7670 1.4425 35 1 1.2569 1.8015 1.9563 36 1 3.9931 0.5052 -0.2617 37 1 3.8426 2.2371 -0.6443 38 1 5.7984 0.6416 -1.6398 39 1 5.8601 2.0965 -2.6812 40 1 6.4495 -0.8154 -3.4473 41 1 7.4203 0.6524 -3.8042 42 1 6.0265 -2.3319 -4.6330 43 1 6.9504 -4.1912 -7.8670 44 1 6.8176 -4.4397 -6.1095 45 1 4.2123 -4.2089 -7.1755 46 1 1.8216 -6.4799 -7.6795 47 1 3.5482 1.2701 -4.9653 48 1 3.6676 -0.4695 -4.5802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098640623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:17 Heat of formation + Delta-G solvation = 12.977878 kcal Electronic energy + Delta-G solvation = -29078.762149 eV Core-core repulsion = 24977.852450 eV Total energy + Delta-G solvation = -4100.909698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.34139 -41.28254 -39.44278 -38.39416 -36.83899 -35.26523 -33.90511 -33.65822 -31.84169 -31.62597 -30.33868 -28.73766 -27.68158 -27.48285 -25.29170 -24.84415 -23.88606 -22.49953 -22.22834 -21.57579 -20.38379 -19.41649 -18.64809 -18.09455 -17.86556 -17.44831 -16.95187 -16.62374 -16.56187 -16.07296 -15.97743 -15.68232 -15.49933 -15.19001 -15.04685 -14.72544 -14.32998 -14.16442 -13.89599 -13.66146 -13.61256 -13.45535 -13.24151 -13.03773 -12.97168 -12.89695 -12.87676 -12.78066 -12.59132 -12.34550 -12.10272 -12.03601 -11.89377 -11.81338 -11.65077 -11.15961 -10.97542 -10.93762 -10.55098 -10.26211 -9.82698 -9.04312 -7.94601 -5.25764 0.51236 1.17615 1.41991 1.49386 1.51206 1.58292 1.60051 1.93477 2.58359 2.87193 3.03858 3.12861 3.35213 3.42276 3.61088 3.68659 3.82143 3.85728 3.91781 4.10004 4.18410 4.19738 4.23980 4.32218 4.36120 4.42349 4.48940 4.53828 4.56389 4.59276 4.65376 4.74657 4.80210 4.82659 4.84645 4.89460 4.98075 5.03942 5.09879 5.11221 5.17970 5.33660 5.49389 5.63314 6.24373 6.28095 6.38000 7.09137 7.30771 7.46421 8.02197 8.27826 9.29494 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.002637 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.545444 B =10614.510606 C =12739.211760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.406 6.406 3 C 0.087 3.913 4 H 0.053 0.947 5 C -0.166 4.166 6 C -0.124 4.124 7 C 0.521 3.479 8 O -0.583 6.583 9 N -0.620 5.620 10 C 0.100 3.900 11 C -0.134 4.134 12 C 0.132 3.868 13 H 0.155 0.845 14 N -0.277 5.277 15 C -0.017 4.017 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.741 5.741 19 C -0.242 4.242 20 H 0.087 0.913 21 C -0.081 4.081 22 N -0.976 5.976 23 Si 0.981 3.019 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.264 1.264 27 N -0.296 5.296 28 N -0.107 5.107 29 C 0.101 3.899 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.220 0.780 43 H 0.032 0.968 44 H 0.064 0.936 45 H 0.368 0.632 46 H 0.250 0.750 47 H 0.075 0.925 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 23.786 23.605 34.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.325 6.325 3 C 0.029 3.971 4 H 0.071 0.929 5 C -0.223 4.223 6 C -0.163 4.163 7 C 0.312 3.688 8 O -0.463 6.463 9 N -0.355 5.355 10 C -0.021 4.021 11 C -0.173 4.173 12 C 0.030 3.970 13 H 0.172 0.828 14 N -0.071 5.071 15 C -0.169 4.169 16 C -0.173 4.173 17 C 0.107 3.893 18 N -0.384 5.384 19 C -0.374 4.374 20 H 0.105 0.895 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.809 3.191 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.189 1.189 27 N -0.163 5.163 28 N -0.086 5.086 29 C -0.024 4.024 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.167 0.833 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.154 0.846 42 H 0.236 0.764 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.199 0.801 46 H 0.058 0.942 47 H 0.093 0.907 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.392 24.370 22.221 34.031 hybrid contribution -1.362 -1.500 -0.024 2.026 sum 7.030 22.870 22.197 32.637 Atomic orbital electron populations 1.22723 0.80529 1.02756 0.99894 1.87849 1.20581 1.28898 1.95186 1.22074 0.93778 0.84656 0.96612 0.92866 1.22235 1.02938 1.02884 0.94265 1.21951 0.99124 1.07091 0.88168 1.21183 0.82781 0.75679 0.89131 1.90732 1.25273 1.51513 1.78734 1.48523 1.08809 1.70308 1.07851 1.22776 0.76576 1.02569 1.00140 1.23412 1.00548 1.03621 0.89691 1.23013 0.95786 0.89226 0.88947 0.82754 1.47460 1.45260 1.08274 1.06107 1.23603 1.07000 0.83942 1.02335 1.22293 1.07305 0.97795 0.89908 1.18998 0.88401 0.82390 0.99482 1.42547 1.03415 1.05001 1.87408 1.19719 0.93318 0.84588 1.39739 0.89475 1.25704 0.95066 1.02963 1.03563 1.69877 0.97466 1.36452 1.58842 0.85026 0.77090 0.79475 0.77466 1.20954 1.22641 1.18898 1.75034 1.16720 0.96007 1.28527 1.78163 1.20661 1.19091 0.90636 1.21994 0.95995 1.00942 0.83472 0.90028 0.92321 0.95282 0.91147 0.88985 0.92446 0.86031 0.83324 0.86460 0.86779 0.89107 0.84639 0.76364 0.95022 0.91789 0.80080 0.94154 0.90690 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.82 113.37 1.23 1.98 16 2 O -0.41 -9.35 9.58 -135.20 -1.30 -10.65 16 3 C 0.09 1.32 2.27 30.59 0.07 1.39 16 4 H 0.05 0.94 7.60 -2.38 -0.02 0.93 16 5 C -0.17 -1.39 9.53 71.98 0.69 -0.70 16 6 C -0.12 -1.32 4.42 29.85 0.13 -1.18 16 7 C 0.52 10.73 7.73 87.66 0.68 11.41 16 8 O -0.58 -18.97 15.75 10.76 0.17 -18.80 16 9 N -0.62 -9.62 3.33 -811.78 -2.70 -12.32 16 10 C 0.10 0.38 6.69 86.86 0.58 0.96 16 11 C -0.13 -0.85 6.49 31.99 0.21 -0.65 16 12 C 0.13 2.03 3.98 46.18 0.18 2.22 16 13 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 14 N -0.28 -7.37 3.28 -321.55 -1.05 -8.42 16 15 C -0.02 -0.51 10.59 83.49 0.88 0.38 16 16 C -0.03 -1.35 6.62 41.60 0.28 -1.07 16 17 C 0.23 10.05 6.82 85.63 0.58 10.63 16 18 N -0.74 -40.45 5.59 -347.17 -1.94 -42.39 16 19 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 20 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 21 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 22 N -0.98 -63.50 13.06 21.65 0.28 -63.22 16 23 Si 0.98 47.67 29.55 68.60 2.03 49.70 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 N -0.30 -12.47 12.41 -48.60 -0.60 -13.07 16 28 N -0.11 -3.80 13.16 37.02 0.49 -3.31 16 29 C 0.10 2.14 6.62 86.73 0.57 2.71 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 0.87 7.87 -2.39 -0.02 0.85 16 32 H 0.03 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 36 H 0.12 0.91 7.85 -2.39 -0.02 0.89 16 37 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.12 -0.08 7.48 -2.39 -0.02 -0.10 16 39 H 0.11 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.09 0.73 6.39 -2.39 -0.02 0.72 16 41 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.22 4.71 7.01 -2.91 -0.02 4.69 16 43 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 2.39 8.14 -2.38 -0.02 2.38 16 45 H 0.37 22.26 7.66 -92.71 -0.71 21.55 16 46 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 47 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.04 1.19 8.03 -2.39 -0.02 1.17 16 Total: -1.00 -91.85 398.49 3.01 -88.83 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.26 Total: 23.14 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 7.39 Total: 10.51 kcal Atomic # 7 Polarization: -137.21 SS G_CDS: -5.53 Total: -142.74 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.13 Total: -29.45 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -91.85 3.01 -88.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098640623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.812 kcal (2) G-P(sol) polarization free energy of solvation -91.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds