Wall clock time and date at job start Tue Mar 31 2020 19:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99531 * 2 1 4 4 H 1.08995 * 109.47293 * 29.99433 * 3 2 1 5 5 C 1.53008 * 109.46666 * 269.99829 * 3 2 1 6 6 C 1.52999 * 109.47009 * 150.00134 * 3 2 1 7 7 C 1.50701 * 109.46820 * 294.99392 * 6 3 2 8 8 O 1.21282 * 120.00364 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99856 * 180.02562 * 7 6 3 10 10 C 1.47019 * 125.65068 * 0.02562 * 9 7 6 11 11 C 1.54321 * 107.27531 * 178.90607 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09001 * 111.00741 * 277.51995 * 12 11 10 14 14 N 1.46506 * 111.00374 * 153.66359 * 12 11 10 15 15 C 1.35305 * 125.86870 * 326.45437 * 14 12 11 16 16 C 1.35348 * 106.17780 * 180.02562 * 15 14 12 17 17 C 1.50694 * 126.75332 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47213 * 94.99905 * 17 16 15 19 19 C 1.36933 * 120.00097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00470 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00184 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99567 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00406 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46917 * 90.00177 * 23 21 19 25 25 H 1.48502 * 109.47377 * 210.00120 * 23 21 19 26 26 H 1.48502 * 109.47148 * 330.00451 * 23 21 19 27 27 N 1.33769 * 106.49327 * 359.97438 * 16 15 14 28 28 N 1.28635 * 108.88572 * 359.74092 * 27 16 15 29 29 C 1.47431 * 125.64789 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47459 * 300.00213 * 1 2 3 31 31 H 1.08994 * 109.47340 * 60.00644 * 1 2 3 32 32 H 1.09005 * 109.46416 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46632 * 299.99940 * 5 3 2 34 34 H 1.08997 * 109.47310 * 59.99998 * 5 3 2 35 35 H 1.08998 * 109.46798 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47144 * 174.99582 * 6 3 2 37 37 H 1.08999 * 109.47227 * 54.99406 * 6 3 2 38 38 H 1.09001 * 109.88251 * 59.48348 * 10 9 7 39 39 H 1.09004 * 109.88394 * 298.32261 * 10 9 7 40 40 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 41 41 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 42 42 H 1.08006 * 126.91311 * 0.02562 * 15 14 12 43 43 H 1.09005 * 109.47245 * 214.99577 * 17 16 15 44 44 H 1.08996 * 109.47439 * 335.00109 * 17 16 15 45 45 H 0.96998 * 119.99650 * 0.02562 * 18 17 16 46 46 H 0.97002 * 119.99779 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36190 * 322.99854 * 29 9 7 48 48 H 1.08998 * 110.36491 * 85.21533 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2176 1.7714 -1.4426 6 6 3.3589 1.2634 0.7212 7 6 3.1415 0.9239 2.1733 8 8 2.0186 0.7338 2.5902 9 7 4.1951 0.8314 3.0087 10 6 5.6030 1.0367 2.6383 11 6 6.4448 0.8561 3.9190 12 6 5.4197 1.1190 5.0537 13 1 5.3007 2.1876 5.2329 14 7 5.8068 0.4223 6.2830 15 6 6.4378 -0.7726 6.3519 16 6 6.5987 -1.0387 7.6691 17 6 7.2500 -2.2576 8.2698 18 7 8.6575 -1.9684 8.5557 19 6 9.4560 -2.9333 9.1093 20 1 9.0483 -3.9076 9.3350 21 6 10.7895 -2.6591 9.3806 22 7 11.2862 -1.4715 9.1061 23 14 11.8786 -3.9751 10.1366 24 1 12.5190 -4.7680 9.0566 25 1 12.9281 -3.3320 10.9674 26 1 11.0545 -4.8715 10.9866 27 7 6.0658 -0.0068 8.3329 28 7 5.6103 0.8445 7.4828 29 6 4.1265 0.5087 4.4456 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 2.8829 1.0774 -1.9563 34 1 1.2568 1.8013 -1.9565 35 1 2.6613 2.7670 -1.4426 36 1 3.8426 2.2372 0.6443 37 1 3.9931 0.5053 0.2618 38 1 5.7395 2.0436 2.2438 39 1 5.9011 0.3003 1.8919 40 1 6.8382 -0.1585 3.9821 41 1 7.2545 1.5851 3.9544 42 1 6.7502 -1.3900 5.5225 43 1 6.7388 -2.5241 9.1950 44 1 7.1853 -3.0880 7.5667 45 1 9.0235 -1.0933 8.3534 46 1 12.2179 -1.2798 9.2961 47 1 3.2446 0.9650 4.8951 48 1 4.1103 -0.5713 4.5915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098640628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:20 Heat of formation + Delta-G solvation = 40.974029 kcal Electronic energy + Delta-G solvation = -28677.760845 eV Core-core repulsion = 24578.065151 eV Total energy + Delta-G solvation = -4099.695694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.06336 -40.61497 -38.80754 -37.65282 -35.07819 -34.09160 -33.27853 -31.95557 -30.97875 -30.00157 -29.63687 -28.17852 -26.87707 -25.88209 -24.51260 -23.17951 -22.73705 -21.93780 -20.89760 -20.63144 -19.77380 -17.92684 -17.54006 -17.31546 -17.01970 -16.38561 -16.00528 -15.76332 -15.48416 -15.03315 -14.78921 -14.60773 -14.46693 -14.13673 -13.74165 -13.65891 -13.36538 -13.16599 -13.13608 -13.00836 -12.75044 -12.51146 -12.47452 -12.42856 -12.12877 -12.00298 -11.82178 -11.48297 -11.25116 -11.17558 -10.90256 -10.80252 -10.47746 -10.27886 -10.08992 -9.98382 -9.89170 -9.72132 -9.19950 -8.89028 -8.85195 -6.91465 -5.73759 -3.03267 1.74032 2.02717 2.23318 2.65751 2.88903 3.38114 3.45877 3.51274 3.53379 3.65751 3.82778 4.14360 4.22303 4.27949 4.37610 4.55908 4.63202 4.65515 4.74419 4.76093 4.91056 4.97219 4.98096 5.04515 5.09387 5.16675 5.18278 5.23431 5.27694 5.30895 5.37294 5.43274 5.44929 5.49910 5.61457 5.63853 5.68998 5.82767 6.17484 6.38783 6.65078 6.72605 6.78297 6.83265 6.95878 7.71760 7.72421 8.43501 8.80911 9.55404 10.10889 10.47022 11.48973 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.001844 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.857022 B =15181.804979 C =15377.967560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.099 3.901 4 H 0.069 0.931 5 C -0.175 4.175 6 C -0.135 4.135 7 C 0.535 3.465 8 O -0.526 6.526 9 N -0.622 5.622 10 C 0.104 3.896 11 C -0.143 4.143 12 C 0.135 3.865 13 H 0.129 0.871 14 N -0.292 5.292 15 C -0.043 4.043 16 C -0.002 4.002 17 C 0.232 3.768 18 N -0.725 5.725 19 C -0.239 4.239 20 H 0.073 0.927 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.251 5.251 28 N -0.092 5.092 29 C 0.103 3.897 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.188 0.812 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.093 0.907 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 9.008 -25.197 32.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.040 3.960 4 H 0.087 0.913 5 C -0.233 4.233 6 C -0.175 4.175 7 C 0.324 3.676 8 O -0.401 6.401 9 N -0.359 5.359 10 C -0.020 4.020 11 C -0.182 4.182 12 C 0.031 3.969 13 H 0.147 0.853 14 N -0.086 5.086 15 C -0.193 4.193 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.370 4.370 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.741 3.259 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.071 5.071 29 C -0.022 4.022 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.205 0.795 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.914 9.728 -24.079 32.128 hybrid contribution 1.200 -0.911 -0.448 1.572 sum -17.714 8.817 -24.527 31.514 Atomic orbital electron populations 1.22711 0.80819 1.02615 0.99758 1.87892 1.19973 1.26818 1.94963 1.21801 0.93376 0.86026 0.94791 0.91336 1.22301 1.02786 1.01698 0.96486 1.21847 0.99424 1.04578 0.91628 1.20287 0.83245 0.76496 0.87544 1.90732 1.22635 1.49169 1.77536 1.48381 1.06961 1.71309 1.09220 1.22085 0.79998 1.02498 0.97404 1.23136 0.97733 1.05586 0.91726 1.22666 0.95289 0.98307 0.80622 0.85296 1.47004 1.39565 1.15019 1.07040 1.23282 1.04823 0.90662 1.00538 1.22470 1.02433 0.98867 0.90155 1.18961 0.85944 0.88002 0.96818 1.42299 1.03878 1.15250 1.75605 1.19236 0.91116 0.93523 1.33156 0.90872 1.24761 0.97166 0.96930 1.02101 1.69685 1.14069 1.20482 1.53826 0.86151 0.80409 0.80670 0.78714 1.21761 1.21802 1.20666 1.75115 1.11515 1.00751 1.24425 1.78303 1.20786 1.22039 0.85937 1.22521 0.97548 1.01205 0.80901 0.93552 0.94546 0.89899 0.91534 0.92037 0.91401 0.87459 0.87736 0.90245 0.89994 0.88503 0.87882 0.79534 0.94252 0.94432 0.78109 0.93541 0.88894 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.82 101.05 1.09 1.38 16 2 O -0.38 -3.61 9.58 -49.65 -0.48 -4.09 16 3 C 0.10 0.68 2.27 -26.73 -0.06 0.62 16 4 H 0.07 0.51 7.60 -51.93 -0.39 0.12 16 5 C -0.18 -0.80 9.53 37.16 0.35 -0.45 16 6 C -0.14 -0.77 4.60 -27.88 -0.13 -0.90 16 7 C 0.54 4.95 7.73 -10.98 -0.08 4.86 16 8 O -0.53 -6.98 15.67 -8.87 -0.14 -7.12 16 9 N -0.62 -4.80 3.33 -170.22 -0.57 -5.36 16 10 C 0.10 0.47 6.49 -3.07 -0.02 0.45 16 11 C -0.14 -0.87 6.37 -24.90 -0.16 -1.03 16 12 C 0.14 1.20 4.10 -65.52 -0.27 0.94 16 13 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 14 N -0.29 -3.98 3.38 -52.43 -0.18 -4.16 16 15 C -0.04 -0.63 10.59 -17.05 -0.18 -0.81 16 16 C 0.00 -0.03 6.61 -82.78 -0.55 -0.58 16 17 C 0.23 4.87 6.82 -5.19 -0.04 4.83 16 18 N -0.73 -18.89 5.59 -61.09 -0.34 -19.23 16 19 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 N -0.25 -5.11 12.41 33.28 0.41 -4.69 16 28 N -0.09 -1.62 13.16 60.35 0.79 -0.83 16 29 C 0.10 0.94 6.62 -2.27 -0.02 0.93 16 30 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.28 7.87 -51.93 -0.41 -0.13 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.63 6.39 -51.93 -0.33 0.29 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.19 2.10 7.02 -52.48 -0.37 1.73 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.39 10.79 7.66 -40.82 -0.31 10.48 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -37.35 399.49 -6.75 -44.10 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.68 Total: 2.89 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.30 Total: 2.86 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.85 Total: -62.10 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.61 Total: -11.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.35 -6.75 -44.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098640628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.073 kcal (2) G-P(sol) polarization free energy of solvation -37.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds