Wall clock time and date at job start Tue Mar 31 2020 19:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99531 * 2 1 4 4 H 1.08995 * 109.47293 * 29.99433 * 3 2 1 5 5 C 1.53008 * 109.46666 * 269.99829 * 3 2 1 6 6 C 1.52999 * 109.47009 * 150.00134 * 3 2 1 7 7 C 1.50701 * 109.46820 * 294.99392 * 6 3 2 8 8 O 1.21282 * 120.00364 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99856 * 180.02562 * 7 6 3 10 10 C 1.47019 * 125.65068 * 0.02562 * 9 7 6 11 11 C 1.54321 * 107.27531 * 178.90607 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09001 * 111.00741 * 277.51995 * 12 11 10 14 14 N 1.46506 * 111.00374 * 153.66359 * 12 11 10 15 15 C 1.35305 * 125.86870 * 326.45437 * 14 12 11 16 16 C 1.35348 * 106.17780 * 180.02562 * 15 14 12 17 17 C 1.50694 * 126.75332 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47213 * 94.99905 * 17 16 15 19 19 C 1.36933 * 120.00097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00470 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00184 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99567 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00406 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46917 * 90.00177 * 23 21 19 25 25 H 1.48502 * 109.47377 * 210.00120 * 23 21 19 26 26 H 1.48502 * 109.47148 * 330.00451 * 23 21 19 27 27 N 1.33769 * 106.49327 * 359.97438 * 16 15 14 28 28 N 1.28635 * 108.88572 * 359.74092 * 27 16 15 29 29 C 1.47431 * 125.64789 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47459 * 300.00213 * 1 2 3 31 31 H 1.08994 * 109.47340 * 60.00644 * 1 2 3 32 32 H 1.09005 * 109.46416 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46632 * 299.99940 * 5 3 2 34 34 H 1.08997 * 109.47310 * 59.99998 * 5 3 2 35 35 H 1.08998 * 109.46798 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47144 * 174.99582 * 6 3 2 37 37 H 1.08999 * 109.47227 * 54.99406 * 6 3 2 38 38 H 1.09001 * 109.88251 * 59.48348 * 10 9 7 39 39 H 1.09004 * 109.88394 * 298.32261 * 10 9 7 40 40 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 41 41 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 42 42 H 1.08006 * 126.91311 * 0.02562 * 15 14 12 43 43 H 1.09005 * 109.47245 * 214.99577 * 17 16 15 44 44 H 1.08996 * 109.47439 * 335.00109 * 17 16 15 45 45 H 0.96998 * 119.99650 * 0.02562 * 18 17 16 46 46 H 0.97002 * 119.99779 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36190 * 322.99854 * 29 9 7 48 48 H 1.08998 * 110.36491 * 85.21533 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2176 1.7714 -1.4426 6 6 3.3589 1.2634 0.7212 7 6 3.1415 0.9239 2.1733 8 8 2.0186 0.7338 2.5902 9 7 4.1951 0.8314 3.0087 10 6 5.6030 1.0367 2.6383 11 6 6.4448 0.8561 3.9190 12 6 5.4197 1.1190 5.0537 13 1 5.3007 2.1876 5.2329 14 7 5.8068 0.4223 6.2830 15 6 6.4378 -0.7726 6.3519 16 6 6.5987 -1.0387 7.6691 17 6 7.2500 -2.2576 8.2698 18 7 8.6575 -1.9684 8.5557 19 6 9.4560 -2.9333 9.1093 20 1 9.0483 -3.9076 9.3350 21 6 10.7895 -2.6591 9.3806 22 7 11.2862 -1.4715 9.1061 23 14 11.8786 -3.9751 10.1366 24 1 12.5190 -4.7680 9.0566 25 1 12.9281 -3.3320 10.9674 26 1 11.0545 -4.8715 10.9866 27 7 6.0658 -0.0068 8.3329 28 7 5.6103 0.8445 7.4828 29 6 4.1265 0.5087 4.4456 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 2.8829 1.0774 -1.9563 34 1 1.2568 1.8013 -1.9565 35 1 2.6613 2.7670 -1.4426 36 1 3.8426 2.2372 0.6443 37 1 3.9931 0.5053 0.2618 38 1 5.7395 2.0436 2.2438 39 1 5.9011 0.3003 1.8919 40 1 6.8382 -0.1585 3.9821 41 1 7.2545 1.5851 3.9544 42 1 6.7502 -1.3900 5.5225 43 1 6.7388 -2.5241 9.1950 44 1 7.1853 -3.0880 7.5667 45 1 9.0235 -1.0933 8.3534 46 1 12.2179 -1.2798 9.2961 47 1 3.2446 0.9650 4.8951 48 1 4.1103 -0.5713 4.5915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098640628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:19 Heat of formation + Delta-G solvation = 13.593251 kcal Electronic energy + Delta-G solvation = -28678.948164 eV Core-core repulsion = 24578.065151 eV Total energy + Delta-G solvation = -4100.883014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.32875 -41.27615 -39.42305 -38.36961 -36.81819 -35.26164 -33.88751 -33.64195 -31.85305 -31.59967 -30.30744 -28.72883 -27.66080 -27.45623 -25.29741 -24.81502 -23.86958 -22.44567 -22.24628 -21.62510 -20.36768 -19.37859 -18.62667 -18.12510 -17.83615 -17.35349 -16.97211 -16.59237 -16.47170 -16.07551 -15.95040 -15.66492 -15.45846 -15.19844 -15.05519 -14.72363 -14.30077 -14.24443 -14.07663 -13.65135 -13.55812 -13.43988 -13.16834 -13.05590 -12.96631 -12.88141 -12.80668 -12.75721 -12.57117 -12.32292 -12.08267 -12.03344 -11.89022 -11.79082 -11.65551 -11.13144 -10.95350 -10.92756 -10.53593 -10.25505 -9.80928 -9.00665 -7.92020 -5.22234 0.53799 1.12923 1.43992 1.52144 1.53585 1.58415 1.62344 1.95102 2.60679 2.88166 3.00146 3.16504 3.36363 3.43586 3.60899 3.66639 3.82812 3.86424 3.92795 4.08914 4.20063 4.21191 4.24756 4.29255 4.35517 4.46208 4.50938 4.54491 4.57663 4.62809 4.67517 4.76480 4.80667 4.83161 4.86417 4.90370 4.97176 5.04357 5.08331 5.11621 5.18197 5.33952 5.52609 5.63698 6.27693 6.28696 6.37306 7.07628 7.34819 7.47737 8.05556 8.32017 9.31733 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.001844 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.857022 B =15181.804979 C =15377.967560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.403 6.403 3 C 0.090 3.910 4 H 0.054 0.946 5 C -0.168 4.168 6 C -0.127 4.127 7 C 0.527 3.473 8 O -0.578 6.578 9 N -0.619 5.619 10 C 0.104 3.896 11 C -0.137 4.137 12 C 0.128 3.872 13 H 0.140 0.860 14 N -0.275 5.275 15 C -0.015 4.015 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.738 5.738 19 C -0.244 4.244 20 H 0.083 0.917 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.282 1.282 25 H -0.299 1.299 26 H -0.270 1.270 27 N -0.296 5.296 28 N -0.111 5.111 29 C 0.107 3.893 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.226 0.774 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.072 0.928 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 8.930 -28.045 33.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.323 6.323 3 C 0.031 3.969 4 H 0.073 0.927 5 C -0.225 4.225 6 C -0.166 4.166 7 C 0.318 3.682 8 O -0.457 6.457 9 N -0.354 5.354 10 C -0.018 4.018 11 C -0.175 4.175 12 C 0.026 3.974 13 H 0.158 0.842 14 N -0.069 5.069 15 C -0.167 4.167 16 C -0.173 4.173 17 C 0.107 3.893 18 N -0.380 5.380 19 C -0.375 4.375 20 H 0.101 0.899 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.209 1.209 25 H -0.226 1.226 26 H -0.194 1.194 27 N -0.163 5.163 28 N -0.089 5.089 29 C -0.018 4.018 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.242 0.758 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.043 9.655 -26.950 33.839 hybrid contribution 0.798 -0.846 0.365 1.219 sum -17.245 8.809 -26.585 32.890 Atomic orbital electron populations 1.22738 0.80438 1.02908 0.99867 1.87841 1.20643 1.28637 1.95175 1.22023 0.93680 0.84778 0.96369 0.92739 1.22245 1.02922 1.02779 0.94553 1.21949 0.99182 1.06945 0.88564 1.21031 0.82665 0.75563 0.88937 1.90714 1.24785 1.51568 1.78604 1.48450 1.08337 1.70472 1.08134 1.22362 0.77337 1.05151 0.96902 1.23219 0.97458 1.06155 0.90682 1.23082 0.96426 0.98349 0.79555 0.84248 1.47328 1.37627 1.14615 1.07341 1.23674 1.02460 0.90595 0.99944 1.22293 1.04469 0.98712 0.91863 1.18971 0.83392 0.89916 0.97006 1.42484 1.05747 1.14241 1.75567 1.19689 0.91583 0.94210 1.32066 0.89869 1.25625 0.98746 0.99114 1.03382 1.69853 1.14070 1.22596 1.55653 0.85064 0.78228 0.78094 0.77879 1.20886 1.22551 1.19440 1.75042 1.13099 1.01856 1.26301 1.78195 1.21484 1.22031 0.87189 1.22311 0.96846 1.00357 0.82327 0.95111 0.92712 0.89612 0.91212 0.92353 0.89328 0.83851 0.86095 0.87122 0.87763 0.88413 0.86341 0.75754 0.95460 0.91879 0.79717 0.94070 0.90937 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.82 113.37 1.23 1.79 16 2 O -0.40 -7.52 9.58 -135.19 -1.30 -8.82 16 3 C 0.09 1.11 2.27 30.60 0.07 1.18 16 4 H 0.05 0.80 7.60 -2.39 -0.02 0.78 16 5 C -0.17 -1.11 9.53 71.98 0.69 -0.42 16 6 C -0.13 -1.07 4.60 29.85 0.14 -0.94 16 7 C 0.53 8.97 7.73 87.66 0.68 9.64 16 8 O -0.58 -15.65 15.67 10.75 0.17 -15.48 16 9 N -0.62 -8.10 3.33 -810.83 -2.70 -10.80 16 10 C 0.10 0.48 6.49 86.73 0.56 1.04 16 11 C -0.14 -1.15 6.37 31.78 0.20 -0.95 16 12 C 0.13 2.03 4.10 46.55 0.19 2.22 16 13 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 14 N -0.28 -7.19 3.38 -319.79 -1.08 -8.27 16 15 C -0.02 -0.42 10.59 83.49 0.88 0.46 16 16 C -0.03 -1.32 6.61 41.59 0.28 -1.04 16 17 C 0.23 9.85 6.82 85.63 0.58 10.43 16 18 N -0.74 -38.64 5.59 -347.17 -1.94 -40.58 16 19 C -0.24 -13.70 9.99 84.04 0.84 -12.86 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 23 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 N -0.30 -12.34 12.41 -48.61 -0.60 -12.95 16 28 N -0.11 -3.92 13.16 37.02 0.49 -3.43 16 29 C 0.11 1.86 6.62 87.02 0.58 2.44 16 30 H 0.03 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 32 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.43 7.87 -2.39 -0.02 0.41 16 35 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.10 0.86 6.39 -2.39 -0.02 0.84 16 41 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.23 4.29 7.02 -2.91 -0.02 4.27 16 43 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.37 21.20 7.66 -92.71 -0.71 20.49 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -84.91 399.49 2.98 -81.93 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.25 Total: 21.08 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 7.38 Total: 9.04 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -5.56 Total: -135.96 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.13 Total: -24.30 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -84.91 2.98 -81.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098640628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.528 kcal (2) G-P(sol) polarization free energy of solvation -84.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds