Wall clock time and date at job start Tue Mar 31 2020 20:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99889 * 2 1 4 4 C 1.53001 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47311 * 55.00018 * 4 3 2 6 6 C 1.53001 * 109.47154 * 294.99945 * 4 3 2 7 7 C 1.50703 * 109.47169 * 175.00045 * 4 3 2 8 8 O 1.21276 * 119.99840 * 26.45080 * 7 4 3 9 9 N 1.34782 * 120.00009 * 206.45819 * 7 4 3 10 10 C 1.47016 * 125.64687 * 354.57101 * 9 7 4 11 11 C 1.54315 * 107.27089 * 179.21141 * 10 9 7 12 12 C 1.55154 * 102.94377 * 337.80920 * 11 10 9 13 13 H 1.09000 * 111.00573 * 277.42517 * 12 11 10 14 14 N 1.46503 * 111.03951 * 153.58786 * 12 11 10 15 15 C 1.35312 * 125.86903 * 332.50344 * 14 12 11 16 16 C 1.35346 * 106.17657 * 179.90172 * 15 14 12 17 17 C 1.50707 * 126.75228 * 180.12438 * 16 15 14 18 18 N 1.46501 * 109.46775 * 95.29960 * 17 16 15 19 19 C 1.36932 * 119.99737 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00201 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99606 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47094 * 60.00178 * 23 21 19 25 25 H 1.48498 * 109.46716 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47079 * 299.99567 * 23 21 19 27 27 N 1.33775 * 106.49650 * 0.35388 * 16 15 14 28 28 N 1.28629 * 108.88488 * 359.77047 * 27 16 15 29 29 C 1.47424 * 125.64733 * 174.89095 * 9 7 4 30 30 H 1.09006 * 109.46914 * 60.00258 * 1 2 3 31 31 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47295 * 300.00202 * 1 2 3 33 33 H 1.08996 * 109.47424 * 60.00012 * 3 2 1 34 34 H 1.08998 * 109.46905 * 299.99733 * 3 2 1 35 35 H 1.09004 * 109.47019 * 305.69441 * 6 4 3 36 36 H 1.08992 * 109.46999 * 65.69856 * 6 4 3 37 37 H 1.09000 * 109.46858 * 185.69828 * 6 4 3 38 38 H 1.08998 * 109.88860 * 298.63025 * 10 9 7 39 39 H 1.09006 * 109.88185 * 59.79853 * 10 9 7 40 40 H 1.09011 * 110.72362 * 219.44605 * 11 10 9 41 41 H 1.09000 * 110.72364 * 96.17123 * 11 10 9 42 42 H 1.08002 * 126.91327 * 0.02562 * 15 14 12 43 43 H 1.08998 * 109.46912 * 215.29315 * 17 16 15 44 44 H 1.08995 * 109.46734 * 335.30179 * 17 16 15 45 45 H 0.96999 * 120.00089 * 359.97438 * 18 17 16 46 46 H 0.97001 * 119.99659 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36371 * 322.69481 * 29 9 7 48 48 H 1.08998 * 110.36528 * 84.90929 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5681 -0.8409 6 6 3.9952 0.5368 1.3083 7 6 4.1481 2.5559 -0.1232 8 8 3.5385 3.5297 0.2653 9 7 5.3734 2.7001 -0.6658 10 6 6.2649 1.6040 -1.0721 11 6 7.5421 2.2445 -1.6552 12 6 7.0637 3.6623 -2.0654 13 1 6.5784 3.6438 -3.0412 14 7 8.1754 4.6165 -2.0530 15 6 9.2845 4.5316 -1.2826 16 6 10.0413 5.6105 -1.5910 17 6 11.3814 5.9699 -1.0028 18 7 12.4473 5.4680 -1.8735 19 6 13.7589 5.6766 -1.5400 20 1 14.0076 6.2115 -0.6353 21 6 14.7690 5.2006 -2.3647 22 7 14.4659 4.5483 -3.4670 23 14 16.5583 5.4858 -1.9101 24 1 16.8415 4.8555 -0.5956 25 1 17.4344 4.8830 -2.9465 26 1 16.8212 6.9448 -1.8265 27 7 9.3634 6.2978 -2.5171 28 7 8.2622 5.6825 -2.7691 29 6 6.0442 3.9831 -0.9441 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.5936 1.0976 2.1524 36 1 3.6352 -0.4910 1.3507 37 1 5.0842 0.5426 1.3534 38 1 6.5190 0.9925 -0.2063 39 1 5.7777 0.9917 -1.8309 40 1 7.8899 1.6879 -2.5256 41 1 8.3235 2.3053 -0.8976 42 1 9.5196 3.7576 -0.5670 43 1 11.4620 7.0536 -0.9176 44 1 11.4770 5.5196 -0.0148 45 1 12.2240 4.9873 -2.6859 46 1 15.1717 4.2160 -4.0435 47 1 5.3212 4.7222 -1.2889 48 1 6.5585 4.3433 -0.0531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098645608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:17 Heat of formation + Delta-G solvation = 41.392031 kcal Electronic energy + Delta-G solvation = -28647.424172 eV Core-core repulsion = 24547.746604 eV Total energy + Delta-G solvation = -4099.677568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.08941 -40.82788 -38.73088 -37.90898 -35.11445 -34.41539 -33.79572 -31.97184 -30.95744 -29.99769 -29.33164 -27.88299 -26.35667 -25.90015 -25.13335 -23.23620 -22.78596 -22.54964 -20.91336 -20.63730 -19.59662 -18.19050 -17.71488 -17.10553 -16.66863 -16.50094 -16.32430 -16.05867 -15.44106 -15.18072 -14.95286 -14.81432 -14.50971 -14.17083 -14.00391 -13.74242 -13.47003 -13.30505 -13.14548 -12.98591 -12.77043 -12.63509 -12.50926 -12.17088 -12.05655 -12.00074 -11.85102 -11.54155 -11.38538 -11.25570 -10.91056 -10.79517 -10.48433 -10.34897 -10.16248 -10.12755 -9.92133 -9.73225 -9.28838 -8.90468 -8.86100 -6.92295 -5.74182 -3.03859 1.71007 1.92518 2.07796 2.52748 2.87183 3.26569 3.46275 3.50693 3.51880 3.64246 3.79859 4.03604 4.19955 4.30254 4.35536 4.43805 4.53008 4.62547 4.71672 4.73740 4.85118 4.86046 4.92426 5.02776 5.09526 5.14141 5.18496 5.19116 5.21107 5.25963 5.29251 5.34781 5.37271 5.48192 5.58581 5.62597 5.68130 5.80326 6.16622 6.37149 6.58927 6.63419 6.70212 6.76777 6.83837 7.56321 7.70597 8.43023 8.79004 9.54874 10.10246 10.46360 11.48447 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027300 B = 0.001818 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.383045 B =15395.888630 C =15818.075320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.078 3.922 4 C -0.104 4.104 5 H 0.103 0.897 6 C -0.138 4.138 7 C 0.541 3.459 8 O -0.532 6.532 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.143 4.143 12 C 0.136 3.864 13 H 0.129 0.871 14 N -0.293 5.293 15 C -0.043 4.043 16 C -0.002 4.002 17 C 0.232 3.768 18 N -0.725 5.725 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.250 5.250 28 N -0.092 5.092 29 C 0.102 3.898 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.188 0.812 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.094 0.906 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.567 -13.563 7.871 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.001 3.999 4 C -0.125 4.125 5 H 0.121 0.879 6 C -0.196 4.196 7 C 0.330 3.670 8 O -0.407 6.407 9 N -0.353 5.353 10 C -0.022 4.022 11 C -0.181 4.181 12 C 0.032 3.968 13 H 0.147 0.853 14 N -0.087 5.087 15 C -0.193 4.193 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.117 5.117 28 N -0.070 5.070 29 C -0.022 4.022 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.205 0.795 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.113 0.887 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.414 -12.282 7.121 31.763 hybrid contribution 1.239 -0.605 0.579 1.495 sum -27.175 -12.887 7.700 31.045 Atomic orbital electron populations 1.22754 0.80437 1.02900 1.00280 1.87803 1.20103 1.27526 1.95552 1.22250 0.91257 0.84626 1.01745 1.21147 0.95315 0.93818 1.02248 0.87934 1.21696 1.01352 1.01806 0.94708 1.20132 0.79382 0.91051 0.76429 1.90750 1.61090 1.41255 1.47648 1.48321 1.16357 1.07646 1.62961 1.22155 0.89490 0.90027 1.00518 1.23146 0.97990 0.93443 1.03537 1.22583 0.85283 0.87110 1.01836 0.85309 1.47012 1.15414 1.18506 1.27785 1.23290 0.89289 1.03826 1.02928 1.22482 0.99599 0.93686 0.98143 1.18963 0.80320 0.97726 0.92704 1.42287 1.00834 1.67543 1.26359 1.19190 0.82459 1.30054 1.05507 0.90930 1.24754 0.98006 1.00957 0.97119 1.69672 1.31769 1.42526 1.14079 0.86232 0.84791 0.77760 0.77164 1.21250 1.21739 1.21172 1.75120 0.99391 1.23637 1.13598 1.78309 1.16736 0.95608 1.16382 1.22485 0.95172 0.87019 0.97549 0.93925 0.89382 0.93852 0.91850 0.92778 0.91839 0.90310 0.92022 0.89806 0.89997 0.87681 0.88407 0.79487 0.94258 0.94450 0.78102 0.93478 0.88749 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.90 10.34 -35.23 -0.36 -3.26 16 3 C 0.08 0.58 4.78 37.16 0.18 0.75 16 4 C -0.10 -0.68 2.44 -91.77 -0.22 -0.91 16 5 H 0.10 0.52 7.23 -51.93 -0.38 0.14 16 6 C -0.14 -0.78 9.01 37.16 0.33 -0.45 16 7 C 0.54 4.90 6.94 -10.98 -0.08 4.82 16 8 O -0.53 -6.87 16.52 5.56 0.09 -6.78 16 9 N -0.62 -4.63 3.33 -170.53 -0.57 -5.19 16 10 C 0.10 0.46 6.31 -3.07 -0.02 0.44 16 11 C -0.14 -0.82 6.32 -24.90 -0.16 -0.98 16 12 C 0.14 1.17 4.12 -65.78 -0.27 0.90 16 13 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 14 N -0.29 -3.91 3.40 -52.68 -0.18 -4.09 16 15 C -0.04 -0.62 10.61 -17.05 -0.18 -0.80 16 16 C 0.00 -0.03 6.62 -82.77 -0.55 -0.58 16 17 C 0.23 4.82 6.82 -5.19 -0.04 4.79 16 18 N -0.73 -18.79 5.59 -61.08 -0.34 -19.13 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 N -0.25 -5.05 12.41 33.29 0.41 -4.63 16 28 N -0.09 -1.60 13.17 60.35 0.79 -0.80 16 29 C 0.10 0.90 6.58 -2.53 -0.02 0.88 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.51 8.03 -51.93 -0.42 0.09 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.41 7.97 -51.93 -0.41 0.00 16 37 H 0.06 0.29 7.26 -51.93 -0.38 -0.09 16 38 H 0.08 0.28 7.26 -51.93 -0.38 -0.10 16 39 H 0.08 0.24 7.68 -51.93 -0.40 -0.16 16 40 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.10 0.57 6.25 -51.93 -0.32 0.25 16 42 H 0.19 2.02 6.82 -52.49 -0.36 1.67 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.39 10.75 7.66 -40.82 -0.31 10.44 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -36.51 397.53 -6.16 -42.66 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.55 Total: 2.83 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.15 Total: 2.79 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.84 Total: -61.58 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.27 Total: -10.04 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.51 -6.16 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.057 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds