Wall clock time and date at job start Tue Mar 31 2020 20:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99889 * 2 1 4 4 C 1.53001 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47311 * 55.00018 * 4 3 2 6 6 C 1.53001 * 109.47154 * 294.99945 * 4 3 2 7 7 C 1.50703 * 109.47169 * 175.00045 * 4 3 2 8 8 O 1.21276 * 119.99840 * 26.45080 * 7 4 3 9 9 N 1.34782 * 120.00009 * 206.45819 * 7 4 3 10 10 C 1.47016 * 125.64687 * 354.57101 * 9 7 4 11 11 C 1.54315 * 107.27089 * 179.21141 * 10 9 7 12 12 C 1.55154 * 102.94377 * 337.80920 * 11 10 9 13 13 H 1.09000 * 111.00573 * 277.42517 * 12 11 10 14 14 N 1.46503 * 111.03951 * 153.58786 * 12 11 10 15 15 C 1.35312 * 125.86903 * 332.50344 * 14 12 11 16 16 C 1.35346 * 106.17657 * 179.90172 * 15 14 12 17 17 C 1.50707 * 126.75228 * 180.12438 * 16 15 14 18 18 N 1.46501 * 109.46775 * 95.29960 * 17 16 15 19 19 C 1.36932 * 119.99737 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00201 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99606 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47094 * 60.00178 * 23 21 19 25 25 H 1.48498 * 109.46716 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47079 * 299.99567 * 23 21 19 27 27 N 1.33775 * 106.49650 * 0.35388 * 16 15 14 28 28 N 1.28629 * 108.88488 * 359.77047 * 27 16 15 29 29 C 1.47424 * 125.64733 * 174.89095 * 9 7 4 30 30 H 1.09006 * 109.46914 * 60.00258 * 1 2 3 31 31 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47295 * 300.00202 * 1 2 3 33 33 H 1.08996 * 109.47424 * 60.00012 * 3 2 1 34 34 H 1.08998 * 109.46905 * 299.99733 * 3 2 1 35 35 H 1.09004 * 109.47019 * 305.69441 * 6 4 3 36 36 H 1.08992 * 109.46999 * 65.69856 * 6 4 3 37 37 H 1.09000 * 109.46858 * 185.69828 * 6 4 3 38 38 H 1.08998 * 109.88860 * 298.63025 * 10 9 7 39 39 H 1.09006 * 109.88185 * 59.79853 * 10 9 7 40 40 H 1.09011 * 110.72362 * 219.44605 * 11 10 9 41 41 H 1.09000 * 110.72364 * 96.17123 * 11 10 9 42 42 H 1.08002 * 126.91327 * 0.02562 * 15 14 12 43 43 H 1.08998 * 109.46912 * 215.29315 * 17 16 15 44 44 H 1.08995 * 109.46734 * 335.30179 * 17 16 15 45 45 H 0.96999 * 120.00089 * 359.97438 * 18 17 16 46 46 H 0.97001 * 119.99659 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36371 * 322.69481 * 29 9 7 48 48 H 1.08998 * 110.36528 * 84.90929 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5681 -0.8409 6 6 3.9952 0.5368 1.3083 7 6 4.1481 2.5559 -0.1232 8 8 3.5385 3.5297 0.2653 9 7 5.3734 2.7001 -0.6658 10 6 6.2649 1.6040 -1.0721 11 6 7.5421 2.2445 -1.6552 12 6 7.0637 3.6623 -2.0654 13 1 6.5784 3.6438 -3.0412 14 7 8.1754 4.6165 -2.0530 15 6 9.2845 4.5316 -1.2826 16 6 10.0413 5.6105 -1.5910 17 6 11.3814 5.9699 -1.0028 18 7 12.4473 5.4680 -1.8735 19 6 13.7589 5.6766 -1.5400 20 1 14.0076 6.2115 -0.6353 21 6 14.7690 5.2006 -2.3647 22 7 14.4659 4.5483 -3.4670 23 14 16.5583 5.4858 -1.9101 24 1 16.8415 4.8555 -0.5956 25 1 17.4344 4.8830 -2.9465 26 1 16.8212 6.9448 -1.8265 27 7 9.3634 6.2978 -2.5171 28 7 8.2622 5.6825 -2.7691 29 6 6.0442 3.9831 -0.9441 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.5936 1.0976 2.1524 36 1 3.6352 -0.4910 1.3507 37 1 5.0842 0.5426 1.3534 38 1 6.5190 0.9925 -0.2063 39 1 5.7777 0.9917 -1.8309 40 1 7.8899 1.6879 -2.5256 41 1 8.3235 2.3053 -0.8976 42 1 9.5196 3.7576 -0.5670 43 1 11.4620 7.0536 -0.9176 44 1 11.4770 5.5196 -0.0148 45 1 12.2240 4.9873 -2.6859 46 1 15.1717 4.2160 -4.0435 47 1 5.3212 4.7222 -1.2889 48 1 6.5585 4.3433 -0.0531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098645608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:16 Heat of formation + Delta-G solvation = 14.009803 kcal Electronic energy + Delta-G solvation = -28648.611554 eV Core-core repulsion = 24547.746604 eV Total energy + Delta-G solvation = -4100.864951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.32622 -41.49776 -39.34118 -38.55723 -36.81565 -35.39351 -34.60278 -33.67869 -31.83287 -31.55778 -30.07840 -28.33060 -27.65054 -26.83682 -25.87392 -24.81117 -23.97947 -23.15291 -22.21101 -21.62393 -20.20062 -19.36362 -18.80577 -18.36846 -17.42241 -17.22919 -17.04709 -16.88802 -16.55862 -16.16393 -15.92976 -15.75292 -15.52471 -15.40252 -15.06590 -14.78122 -14.50622 -14.30094 -14.13402 -13.95295 -13.56479 -13.49693 -13.22827 -13.08732 -13.06973 -12.81030 -12.71048 -12.57774 -12.45289 -12.33397 -12.11570 -12.07438 -11.88260 -11.87247 -11.76909 -11.16280 -10.96051 -10.92118 -10.68290 -10.24722 -9.89796 -8.99946 -7.91238 -5.21476 0.54499 1.07907 1.39632 1.44795 1.52751 1.55613 1.61617 1.78805 2.61411 2.75828 3.01061 3.16807 3.36291 3.43696 3.48565 3.65422 3.80297 3.84240 3.91553 3.95365 4.06424 4.21619 4.23688 4.25989 4.33433 4.43274 4.47714 4.49759 4.57115 4.59681 4.64001 4.66454 4.76072 4.85113 4.86838 4.87340 4.93648 4.95284 5.04803 5.12331 5.18911 5.27087 5.52979 5.63873 6.10132 6.23428 6.28245 6.89889 7.35518 7.48538 8.06528 8.32776 9.32269 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027300 B = 0.001818 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.383045 B =15395.888630 C =15818.075320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.079 3.921 4 C -0.096 4.096 5 H 0.126 0.874 6 C -0.134 4.134 7 C 0.539 3.461 8 O -0.580 6.580 9 N -0.612 5.612 10 C 0.100 3.900 11 C -0.135 4.135 12 C 0.128 3.872 13 H 0.139 0.861 14 N -0.276 5.276 15 C -0.014 4.014 16 C -0.036 4.036 17 C 0.235 3.765 18 N -0.738 5.738 19 C -0.246 4.246 20 H 0.083 0.917 21 C -0.075 4.075 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.272 1.272 25 H -0.297 1.297 26 H -0.281 1.281 27 N -0.296 5.296 28 N -0.112 5.112 29 C 0.106 3.894 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.103 0.897 42 H 0.229 0.771 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.076 0.924 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.693 -16.069 8.979 33.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.002 3.998 4 C -0.117 4.117 5 H 0.144 0.856 6 C -0.192 4.192 7 C 0.329 3.671 8 O -0.459 6.459 9 N -0.346 5.346 10 C -0.022 4.022 11 C -0.173 4.173 12 C 0.026 3.974 13 H 0.157 0.843 14 N -0.070 5.070 15 C -0.165 4.165 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.381 5.381 19 C -0.377 4.377 20 H 0.101 0.899 21 C -0.267 4.267 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.197 1.197 25 H -0.224 1.224 26 H -0.207 1.207 27 N -0.163 5.163 28 N -0.090 5.090 29 C -0.019 4.019 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.245 0.755 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.572 -14.793 8.248 33.215 hybrid contribution 1.112 0.155 0.273 1.155 sum -27.461 -14.637 8.521 32.264 Atomic orbital electron populations 1.22939 0.79347 1.04097 1.00677 1.87775 1.21374 1.27272 1.95580 1.22190 0.92075 0.84652 1.00889 1.21145 0.94470 0.92423 1.03706 0.85583 1.21685 1.02233 1.01741 0.93517 1.20609 0.79396 0.91451 0.75638 1.90730 1.62416 1.42923 1.49862 1.48351 1.16231 1.07951 1.62111 1.22438 0.88357 0.89169 1.02186 1.23232 0.98723 0.91036 1.04347 1.22997 0.84185 0.87792 1.02408 0.84320 1.47328 1.15928 1.17748 1.25987 1.23708 0.88104 1.02725 1.02005 1.22307 0.99672 0.95815 0.99636 1.18976 0.80363 0.96912 0.93030 1.42476 1.01467 1.67547 1.26571 1.19659 0.83644 1.28934 1.05510 0.89865 1.25610 1.02316 1.01471 0.97310 1.69844 1.32669 1.44252 1.15388 0.85147 0.79456 0.77647 0.77085 1.19727 1.22384 1.20689 1.75047 1.00702 1.25482 1.15064 1.78203 1.16156 0.97014 1.17605 1.22295 0.94783 0.87629 0.97167 0.93476 0.87806 0.93573 0.93192 0.93322 0.93252 0.89542 0.90538 0.87516 0.87427 0.86123 0.87905 0.75492 0.95514 0.91798 0.79732 0.94084 0.90584 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.36 10.34 -148.98 -1.54 -6.90 16 3 C 0.08 1.11 4.78 71.98 0.34 1.45 16 4 C -0.10 -1.07 2.44 -11.54 -0.03 -1.09 16 5 H 0.13 0.80 7.23 -2.38 -0.02 0.79 16 6 C -0.13 -1.20 9.01 71.98 0.65 -0.55 16 7 C 0.54 9.07 6.94 87.66 0.61 9.68 16 8 O -0.58 -15.19 16.52 -3.02 -0.05 -15.24 16 9 N -0.61 -7.77 3.33 -811.83 -2.70 -10.47 16 10 C 0.10 0.47 6.31 86.73 0.55 1.02 16 11 C -0.13 -1.02 6.32 31.78 0.20 -0.81 16 12 C 0.13 1.93 4.12 46.38 0.19 2.13 16 13 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 14 N -0.28 -6.98 3.40 -320.59 -1.09 -8.07 16 15 C -0.01 -0.37 10.61 83.49 0.89 0.51 16 16 C -0.04 -1.33 6.62 41.60 0.28 -1.05 16 17 C 0.23 9.70 6.82 85.63 0.58 10.29 16 18 N -0.74 -38.34 5.59 -347.17 -1.94 -40.28 16 19 C -0.25 -13.72 9.99 84.04 0.84 -12.88 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -59.97 13.06 21.65 0.28 -59.68 16 23 Si 0.98 45.88 29.55 68.60 2.03 47.90 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 27 N -0.30 -12.18 12.41 -48.60 -0.60 -12.78 16 28 N -0.11 -3.88 13.17 37.02 0.49 -3.39 16 29 C 0.11 1.75 6.58 86.85 0.57 2.32 16 30 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.81 8.03 -2.39 -0.02 0.80 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.09 0.67 7.97 -2.39 -0.02 0.65 16 37 H 0.08 0.45 7.26 -2.39 -0.02 0.44 16 38 H 0.11 0.14 7.26 -2.39 -0.02 0.12 16 39 H 0.11 0.06 7.68 -2.38 -0.02 0.04 16 40 H 0.12 0.64 8.14 -2.38 -0.02 0.63 16 41 H 0.10 0.73 6.25 -2.39 -0.01 0.71 16 42 H 0.23 4.00 6.82 -2.91 -0.02 3.98 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 45 H 0.37 21.06 7.66 -92.71 -0.71 20.35 16 46 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 47 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 48 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -81.93 397.53 2.52 -79.42 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.26 Total: 20.88 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 7.38 Total: 8.61 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -5.56 Total: -134.68 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.59 Total: -22.14 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -81.93 2.52 -79.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.430 kcal (2) G-P(sol) polarization free energy of solvation -81.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds