Wall clock time and date at job start Tue Mar 31 2020 20:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99542 * 2 1 4 4 C 1.53000 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47230 * 305.00116 * 4 3 2 6 6 C 1.53002 * 109.46818 * 64.99900 * 4 3 2 7 7 C 1.50698 * 109.47288 * 184.99818 * 4 3 2 8 8 O 1.21273 * 119.99957 * 325.80133 * 7 4 3 9 9 N 1.34777 * 119.99950 * 145.79445 * 7 4 3 10 10 C 1.47024 * 125.64849 * 5.03533 * 9 7 4 11 11 C 1.54326 * 107.27171 * 181.01752 * 10 9 7 12 12 C 1.55161 * 102.94017 * 22.19769 * 11 10 9 13 13 H 1.08995 * 111.00643 * 82.60425 * 12 11 10 14 14 N 1.46500 * 111.00421 * 206.42305 * 12 11 10 15 15 C 1.35320 * 125.86719 * 33.54487 * 14 12 11 16 16 C 1.35348 * 106.17366 * 180.02562 * 15 14 12 17 17 C 1.50700 * 126.75162 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.46719 * 95.00234 * 17 16 15 19 19 C 1.36945 * 119.99581 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00358 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00149 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46930 * 90.00266 * 23 21 19 25 25 H 1.48498 * 109.47186 * 210.00083 * 23 21 19 26 26 H 1.48501 * 109.46994 * 329.99963 * 23 21 19 27 27 N 1.33775 * 106.49683 * 0.02562 * 16 15 14 28 28 N 1.28637 * 108.88723 * 359.73094 * 27 16 15 29 29 C 1.47419 * 125.64746 * 184.72576 * 9 7 4 30 30 H 1.09004 * 109.47175 * 59.99565 * 1 2 3 31 31 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46982 * 300.00172 * 1 2 3 33 33 H 1.08997 * 109.47191 * 60.00313 * 3 2 1 34 34 H 1.08992 * 109.47065 * 299.99796 * 3 2 1 35 35 H 1.08998 * 109.47182 * 59.77706 * 6 4 3 36 36 H 1.09004 * 109.46881 * 179.76753 * 6 4 3 37 37 H 1.09001 * 109.47572 * 299.76796 * 6 4 3 38 38 H 1.08994 * 109.88492 * 300.43974 * 10 9 7 39 39 H 1.09004 * 109.87809 * 61.45358 * 10 9 7 40 40 H 1.08996 * 110.71666 * 140.55846 * 11 10 9 41 41 H 1.09002 * 110.72301 * 263.65709 * 11 10 9 42 42 H 1.08001 * 126.91022 * 359.97438 * 15 14 12 43 43 H 1.09001 * 109.47211 * 215.00082 * 17 16 15 44 44 H 1.08999 * 109.47029 * 334.99953 * 17 16 15 45 45 H 0.96995 * 120.00774 * 359.97438 * 18 17 16 46 46 H 0.97001 * 120.00304 * 180.02562 * 22 21 19 47 47 H 1.09008 * 110.36980 * 274.74871 * 29 9 7 48 48 H 1.08998 * 110.36875 * 37.07257 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8508 0.5686 0.8427 6 6 3.9961 0.5365 -1.3064 7 6 4.1479 2.5561 0.1244 8 8 3.6050 3.5113 -0.3890 9 7 5.2990 2.7211 0.8059 10 6 6.1135 1.6431 1.3855 11 6 7.3170 2.3056 2.0886 12 6 6.8139 3.7497 2.3516 13 1 6.2090 3.7939 3.2572 14 7 7.9342 4.6908 2.4253 15 6 9.0861 4.6091 1.7198 16 6 9.8339 5.6732 2.0944 17 6 11.2090 6.0306 1.5919 18 7 11.0926 6.9933 0.4938 19 6 12.2193 7.4656 -0.1249 20 1 13.1937 7.1288 0.1970 21 6 12.1091 8.3774 -1.1657 22 7 10.9216 8.7876 -1.5584 23 14 13.6460 9.0223 -2.0092 24 1 13.9922 8.1378 -3.1508 25 1 13.3966 10.3988 -2.5075 26 1 14.7709 9.0429 -1.0400 27 7 9.1128 6.3446 2.9992 28 7 7.9903 5.7397 3.1692 29 6 5.9530 4.0117 1.0879 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8465 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.6774 1.1506 -2.1487 36 1 5.0831 0.4543 -1.3077 37 1 3.5565 -0.4570 -1.3941 38 1 5.5240 1.0815 2.1101 39 1 6.4630 0.9773 0.5964 40 1 7.5422 1.7989 3.0270 41 1 8.1899 2.3113 1.4358 42 1 9.3549 3.8475 1.0027 43 1 11.7886 6.4724 2.4025 44 1 11.7105 5.1311 1.2350 45 1 10.2176 7.2956 0.2044 46 1 10.8445 9.4244 -2.2860 47 1 6.5848 4.3079 0.2504 48 1 5.2062 4.7792 1.2907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098645609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:19 Heat of formation + Delta-G solvation = 41.232921 kcal Electronic energy + Delta-G solvation = -28792.782221 eV Core-core repulsion = 24693.097753 eV Total energy + Delta-G solvation = -4099.684468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.08407 -40.76674 -38.69787 -37.87374 -35.09806 -34.34969 -33.77407 -31.95465 -30.95781 -29.97347 -29.29697 -27.85955 -26.32751 -25.89994 -25.08834 -23.21486 -22.76735 -22.54709 -20.91855 -20.63436 -19.52443 -18.16948 -17.69619 -17.03820 -16.64181 -16.50427 -16.26139 -16.00750 -15.39662 -15.16747 -14.94770 -14.74771 -14.52605 -14.15439 -13.94186 -13.72267 -13.45444 -13.30039 -13.11956 -12.94087 -12.76168 -12.58580 -12.49232 -12.22860 -12.00857 -11.94438 -11.80066 -11.54536 -11.36495 -11.26497 -10.89380 -10.79896 -10.48123 -10.30106 -10.12399 -10.08453 -9.90821 -9.72358 -9.23379 -8.89848 -8.85640 -6.91064 -5.72672 -3.02728 1.69872 1.97533 2.13508 2.54771 2.87478 3.30565 3.46472 3.51568 3.53911 3.66745 3.80812 4.09054 4.18068 4.31539 4.37569 4.47954 4.54829 4.63632 4.73245 4.76240 4.87788 4.89380 4.93967 5.04912 5.11390 5.17730 5.20052 5.21182 5.23631 5.29093 5.33610 5.37980 5.42050 5.48469 5.61948 5.65031 5.74632 5.80967 6.17550 6.37419 6.61285 6.63243 6.70510 6.76948 6.89838 7.63711 7.71998 8.44265 8.79072 9.56047 10.11576 10.47269 11.49934 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002076 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.190311 B =13482.093393 C =14437.778203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.077 3.923 4 C -0.103 4.103 5 H 0.100 0.900 6 C -0.138 4.138 7 C 0.540 3.460 8 O -0.528 6.528 9 N -0.618 5.618 10 C 0.102 3.898 11 C -0.141 4.141 12 C 0.136 3.864 13 H 0.130 0.870 14 N -0.293 5.293 15 C -0.043 4.043 16 C -0.001 4.001 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.092 5.092 29 C 0.099 3.901 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.188 0.812 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.386 0.614 46 H 0.255 0.745 47 H 0.085 0.915 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.353 -24.903 6.524 31.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.000 4.000 4 C -0.124 4.124 5 H 0.118 0.882 6 C -0.196 4.196 7 C 0.328 3.672 8 O -0.403 6.403 9 N -0.353 5.353 10 C -0.021 4.021 11 C -0.180 4.180 12 C 0.032 3.968 13 H 0.148 0.852 14 N -0.087 5.087 15 C -0.193 4.193 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.070 5.070 29 C -0.025 4.025 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.205 0.795 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.188 -23.661 7.219 31.307 hybrid contribution 0.772 0.029 -1.391 1.591 sum -18.416 -23.632 5.828 30.522 Atomic orbital electron populations 1.22757 0.80442 1.02880 1.00312 1.87802 1.20098 1.27512 1.95555 1.22260 0.91295 0.84687 1.01746 1.21147 0.95261 0.93775 1.02225 0.88185 1.21689 1.01412 1.01689 0.94780 1.20138 0.79037 0.90839 0.77148 1.90767 1.61369 1.42458 1.45696 1.48323 1.23340 1.07894 1.55786 1.22117 0.91469 0.90439 0.98110 1.23122 0.98798 0.92995 1.03083 1.22635 0.85969 0.87269 1.00926 0.85231 1.47025 1.13454 1.19277 1.28965 1.23284 0.88016 1.04734 1.03296 1.22484 1.00296 0.93372 0.97746 1.18957 0.85914 0.93640 0.91175 1.42303 1.07084 1.50407 1.37273 1.19225 0.86822 1.19778 1.11365 0.90865 1.24771 0.96660 1.00013 0.99470 1.69683 1.21305 1.36058 1.30893 0.86155 0.82275 0.78077 0.79450 1.21755 1.21795 1.20654 1.75120 0.98369 1.22464 1.15813 1.78307 1.16955 0.96305 1.15478 1.22580 0.96871 0.86923 0.96123 0.93804 0.89394 0.93943 0.92873 0.91694 0.91720 0.92039 0.90307 0.90121 0.89888 0.87998 0.88482 0.79526 0.94273 0.94472 0.78091 0.93487 0.89669 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.02 10.24 -35.23 -0.36 -3.38 16 3 C 0.08 0.61 4.88 37.16 0.18 0.79 16 4 C -0.10 -0.74 2.58 -91.77 -0.24 -0.98 16 5 H 0.10 0.53 6.93 -51.93 -0.36 0.17 16 6 C -0.14 -0.91 9.07 37.16 0.34 -0.57 16 7 C 0.54 5.41 6.85 -10.99 -0.08 5.34 16 8 O -0.53 -7.55 16.65 5.56 0.09 -7.46 16 9 N -0.62 -5.13 3.32 -170.38 -0.57 -5.69 16 10 C 0.10 0.46 6.21 -3.06 -0.02 0.44 16 11 C -0.14 -0.72 6.37 -24.89 -0.16 -0.88 16 12 C 0.14 1.18 4.09 -65.66 -0.27 0.91 16 13 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 14 N -0.29 -3.91 3.37 -52.56 -0.18 -4.09 16 15 C -0.04 -0.62 10.59 -17.04 -0.18 -0.80 16 16 C 0.00 -0.03 6.61 -82.78 -0.55 -0.57 16 17 C 0.23 4.83 6.82 -5.20 -0.04 4.80 16 18 N -0.73 -19.01 5.59 -61.09 -0.34 -19.35 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 23 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 N -0.25 -5.05 12.41 33.29 0.41 -4.63 16 28 N -0.09 -1.60 13.17 60.35 0.79 -0.80 16 29 C 0.10 1.00 6.58 -2.41 -0.02 0.99 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.57 8.01 -51.93 -0.42 0.15 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.47 7.83 -51.93 -0.41 0.07 16 38 H 0.08 0.22 7.63 -51.93 -0.40 -0.18 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.51 6.40 -51.93 -0.33 0.18 16 42 H 0.19 2.04 7.03 -52.49 -0.37 1.67 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.39 10.94 7.66 -40.82 -0.31 10.63 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 48 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -37.23 399.28 -6.21 -43.44 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.63 Total: 3.27 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.15 Total: 3.30 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.85 Total: -62.79 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.27 Total: -10.84 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.23 -6.21 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.673 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds