Wall clock time and date at job start Tue Mar 31 2020 20:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99542 * 2 1 4 4 C 1.53000 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47230 * 305.00116 * 4 3 2 6 6 C 1.53002 * 109.46818 * 64.99900 * 4 3 2 7 7 C 1.50698 * 109.47288 * 184.99818 * 4 3 2 8 8 O 1.21273 * 119.99957 * 325.80133 * 7 4 3 9 9 N 1.34777 * 119.99950 * 145.79445 * 7 4 3 10 10 C 1.47024 * 125.64849 * 5.03533 * 9 7 4 11 11 C 1.54326 * 107.27171 * 181.01752 * 10 9 7 12 12 C 1.55161 * 102.94017 * 22.19769 * 11 10 9 13 13 H 1.08995 * 111.00643 * 82.60425 * 12 11 10 14 14 N 1.46500 * 111.00421 * 206.42305 * 12 11 10 15 15 C 1.35320 * 125.86719 * 33.54487 * 14 12 11 16 16 C 1.35348 * 106.17366 * 180.02562 * 15 14 12 17 17 C 1.50700 * 126.75162 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.46719 * 95.00234 * 17 16 15 19 19 C 1.36945 * 119.99581 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00358 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00149 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46930 * 90.00266 * 23 21 19 25 25 H 1.48498 * 109.47186 * 210.00083 * 23 21 19 26 26 H 1.48501 * 109.46994 * 329.99963 * 23 21 19 27 27 N 1.33775 * 106.49683 * 0.02562 * 16 15 14 28 28 N 1.28637 * 108.88723 * 359.73094 * 27 16 15 29 29 C 1.47419 * 125.64746 * 184.72576 * 9 7 4 30 30 H 1.09004 * 109.47175 * 59.99565 * 1 2 3 31 31 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46982 * 300.00172 * 1 2 3 33 33 H 1.08997 * 109.47191 * 60.00313 * 3 2 1 34 34 H 1.08992 * 109.47065 * 299.99796 * 3 2 1 35 35 H 1.08998 * 109.47182 * 59.77706 * 6 4 3 36 36 H 1.09004 * 109.46881 * 179.76753 * 6 4 3 37 37 H 1.09001 * 109.47572 * 299.76796 * 6 4 3 38 38 H 1.08994 * 109.88492 * 300.43974 * 10 9 7 39 39 H 1.09004 * 109.87809 * 61.45358 * 10 9 7 40 40 H 1.08996 * 110.71666 * 140.55846 * 11 10 9 41 41 H 1.09002 * 110.72301 * 263.65709 * 11 10 9 42 42 H 1.08001 * 126.91022 * 359.97438 * 15 14 12 43 43 H 1.09001 * 109.47211 * 215.00082 * 17 16 15 44 44 H 1.08999 * 109.47029 * 334.99953 * 17 16 15 45 45 H 0.96995 * 120.00774 * 359.97438 * 18 17 16 46 46 H 0.97001 * 120.00304 * 180.02562 * 22 21 19 47 47 H 1.09008 * 110.36980 * 274.74871 * 29 9 7 48 48 H 1.08998 * 110.36875 * 37.07257 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8508 0.5686 0.8427 6 6 3.9961 0.5365 -1.3064 7 6 4.1479 2.5561 0.1244 8 8 3.6050 3.5113 -0.3890 9 7 5.2990 2.7211 0.8059 10 6 6.1135 1.6431 1.3855 11 6 7.3170 2.3056 2.0886 12 6 6.8139 3.7497 2.3516 13 1 6.2090 3.7939 3.2572 14 7 7.9342 4.6908 2.4253 15 6 9.0861 4.6091 1.7198 16 6 9.8339 5.6732 2.0944 17 6 11.2090 6.0306 1.5919 18 7 11.0926 6.9933 0.4938 19 6 12.2193 7.4656 -0.1249 20 1 13.1937 7.1288 0.1970 21 6 12.1091 8.3774 -1.1657 22 7 10.9216 8.7876 -1.5584 23 14 13.6460 9.0223 -2.0092 24 1 13.9922 8.1378 -3.1508 25 1 13.3966 10.3988 -2.5075 26 1 14.7709 9.0429 -1.0400 27 7 9.1128 6.3446 2.9992 28 7 7.9903 5.7397 3.1692 29 6 5.9530 4.0117 1.0879 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8465 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.6774 1.1506 -2.1487 36 1 5.0831 0.4543 -1.3077 37 1 3.5565 -0.4570 -1.3941 38 1 5.5240 1.0815 2.1101 39 1 6.4630 0.9773 0.5964 40 1 7.5422 1.7989 3.0270 41 1 8.1899 2.3113 1.4358 42 1 9.3549 3.8475 1.0027 43 1 11.7886 6.4724 2.4025 44 1 11.7105 5.1311 1.2350 45 1 10.2176 7.2956 0.2044 46 1 10.8445 9.4244 -2.2860 47 1 6.5848 4.3079 0.2504 48 1 5.2062 4.7792 1.2907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098645609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:18 Heat of formation + Delta-G solvation = 12.823943 kcal Electronic energy + Delta-G solvation = -28794.014126 eV Core-core repulsion = 24693.097753 eV Total energy + Delta-G solvation = -4100.916374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.32329 -41.49869 -39.34149 -38.56998 -36.82722 -35.38362 -34.60955 -33.68644 -31.82585 -31.57431 -30.07026 -28.35211 -27.67482 -26.85430 -25.87413 -24.82239 -23.96335 -23.17360 -22.23366 -21.63076 -20.18448 -19.38605 -18.83621 -18.32273 -17.44642 -17.24746 -16.99444 -16.88459 -16.60304 -16.15775 -15.90853 -15.81185 -15.51895 -15.41118 -15.09265 -14.77916 -14.46020 -14.30521 -14.13988 -13.96990 -13.65206 -13.51852 -13.22347 -13.09287 -13.03372 -12.85626 -12.77216 -12.56908 -12.45717 -12.33841 -12.09041 -12.05455 -11.91501 -11.87081 -11.78234 -11.16839 -10.96844 -10.94979 -10.68707 -10.25062 -9.90719 -9.02018 -7.93310 -5.23914 0.52861 1.09624 1.37608 1.43810 1.50985 1.52366 1.61181 1.78447 2.59608 2.76386 3.03452 3.15031 3.35864 3.42481 3.48447 3.64507 3.78400 3.85997 3.91121 3.94813 4.07780 4.20912 4.22307 4.24552 4.32237 4.42503 4.47089 4.49614 4.57012 4.58815 4.62960 4.67011 4.76626 4.84537 4.85816 4.87309 4.92095 4.96057 5.04739 5.12283 5.19408 5.24882 5.51415 5.63887 6.08775 6.23558 6.26029 6.89851 7.32780 7.48450 8.04672 8.29833 9.30611 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002076 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.190311 B =13482.093393 C =14437.778203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.078 3.922 4 C -0.093 4.093 5 H 0.130 0.870 6 C -0.135 4.135 7 C 0.535 3.465 8 O -0.583 6.583 9 N -0.612 5.612 10 C 0.097 3.903 11 C -0.130 4.130 12 C 0.131 3.869 13 H 0.146 0.854 14 N -0.276 5.276 15 C -0.015 4.015 16 C -0.036 4.036 17 C 0.235 3.765 18 N -0.740 5.740 19 C -0.242 4.242 20 H 0.087 0.913 21 C -0.080 4.080 22 N -0.974 5.974 23 Si 0.980 3.020 24 H -0.283 1.283 25 H -0.301 1.301 26 H -0.266 1.266 27 N -0.296 5.296 28 N -0.111 5.111 29 C 0.099 3.901 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.227 0.773 43 H 0.030 0.970 44 H 0.066 0.934 45 H 0.369 0.631 46 H 0.250 0.750 47 H 0.065 0.935 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 -28.625 7.202 34.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.001 3.999 4 C -0.114 4.114 5 H 0.148 0.852 6 C -0.192 4.192 7 C 0.325 3.675 8 O -0.462 6.462 9 N -0.346 5.346 10 C -0.024 4.024 11 C -0.168 4.168 12 C 0.029 3.971 13 H 0.163 0.837 14 N -0.070 5.070 15 C -0.166 4.166 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.383 5.383 19 C -0.373 4.373 20 H 0.105 0.895 21 C -0.272 4.272 22 N -0.625 5.625 23 Si 0.808 3.192 24 H -0.210 1.210 25 H -0.228 1.228 26 H -0.190 1.190 27 N -0.163 5.163 28 N -0.089 5.089 29 C -0.026 4.026 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.120 0.880 42 H 0.244 0.756 43 H 0.048 0.952 44 H 0.084 0.916 45 H 0.200 0.800 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.381 -27.455 7.968 33.988 hybrid contribution 0.422 1.082 -1.544 1.932 sum -17.959 -26.373 6.425 32.548 Atomic orbital electron populations 1.22948 0.79323 1.04156 1.00666 1.87773 1.21380 1.27083 1.95576 1.22185 0.92044 0.84808 1.00863 1.21141 0.94455 0.92134 1.03703 0.85189 1.21680 1.02392 1.01556 0.93611 1.20720 0.79051 0.91341 0.76340 1.90743 1.63010 1.44359 1.48118 1.48380 1.23040 1.08193 1.55033 1.22491 0.91085 0.89466 0.99377 1.23226 0.99030 0.89838 1.04721 1.23062 0.84910 0.88473 1.00702 0.83677 1.47343 1.14025 1.18467 1.27160 1.23691 0.87060 1.03708 1.02126 1.22309 1.00333 0.95415 0.99337 1.19001 0.87752 0.93234 0.89316 1.42532 1.05786 1.51470 1.38500 1.19721 0.87972 1.18896 1.10749 0.89525 1.25672 0.99675 1.01009 1.00840 1.69868 1.23715 1.37208 1.31739 0.85043 0.78886 0.76703 0.78522 1.20951 1.22757 1.19039 1.75046 0.99623 1.24169 1.17443 1.78199 1.16216 0.97620 1.16871 1.22376 0.96300 0.87720 0.96170 0.93764 0.87666 0.93352 0.93069 0.93478 0.93732 0.90555 0.89325 0.87026 0.87671 0.85090 0.87991 0.75641 0.95222 0.91582 0.79973 0.94175 0.91716 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.55 10.24 -148.98 -1.53 -7.08 16 3 C 0.08 1.18 4.88 71.98 0.35 1.53 16 4 C -0.09 -1.16 2.58 -11.54 -0.03 -1.19 16 5 H 0.13 0.83 6.93 -2.38 -0.02 0.82 16 6 C -0.13 -1.51 9.07 71.98 0.65 -0.86 16 7 C 0.54 10.33 6.85 87.66 0.60 10.93 16 8 O -0.58 -17.43 16.65 -3.01 -0.05 -17.48 16 9 N -0.61 -8.97 3.32 -811.35 -2.70 -11.67 16 10 C 0.10 0.43 6.21 86.73 0.54 0.97 16 11 C -0.13 -0.73 6.37 31.79 0.20 -0.52 16 12 C 0.13 1.96 4.09 46.46 0.19 2.15 16 13 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 14 N -0.28 -6.96 3.37 -320.21 -1.08 -8.04 16 15 C -0.01 -0.39 10.59 83.49 0.88 0.50 16 16 C -0.04 -1.32 6.61 41.60 0.28 -1.04 16 17 C 0.23 9.66 6.82 85.63 0.58 10.25 16 18 N -0.74 -39.14 5.59 -347.18 -1.94 -41.08 16 19 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 20 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 22 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 23 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 N -0.30 -12.14 12.41 -48.60 -0.60 -12.74 16 28 N -0.11 -3.84 13.17 37.02 0.49 -3.35 16 29 C 0.10 1.96 6.58 86.94 0.57 2.53 16 30 H 0.04 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.86 8.01 -2.39 -0.02 0.84 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.09 0.84 7.83 -2.39 -0.02 0.83 16 38 H 0.11 -0.08 7.63 -2.39 -0.02 -0.09 16 39 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.10 0.54 6.40 -2.39 -0.02 0.53 16 42 H 0.23 4.06 7.03 -2.91 -0.02 4.04 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.37 21.58 7.66 -92.71 -0.71 20.87 16 46 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 47 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 48 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 Total: -1.00 -85.60 399.28 2.53 -83.06 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.26 Total: 21.67 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.38 Total: 9.65 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -5.55 Total: -138.64 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.58 Total: -24.56 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -85.60 2.53 -83.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.888 kcal (2) G-P(sol) polarization free energy of solvation -85.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds