Wall clock time and date at job start Tue Mar 31 2020 20:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99567 * 2 1 4 4 C 1.53000 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.47039 * 55.00025 * 4 3 2 6 6 C 1.53007 * 109.46753 * 295.00139 * 4 3 2 7 7 C 1.50701 * 109.47008 * 175.00415 * 4 3 2 8 8 O 1.21278 * 120.00429 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99396 * 180.02562 * 7 4 3 10 10 C 1.47419 * 125.65221 * 359.97078 * 9 7 4 11 11 C 1.54905 * 104.92834 * 155.83963 * 10 9 7 12 12 C 1.55448 * 101.45165 * 37.00468 * 11 10 9 13 13 H 1.08998 * 110.85957 * 82.96191 * 12 11 10 14 14 N 1.46505 * 110.70786 * 206.14333 * 12 11 10 15 15 C 1.35310 * 125.86534 * 28.55485 * 14 12 11 16 16 C 1.35358 * 106.17459 * 179.97438 * 15 14 12 17 17 C 1.50694 * 126.75208 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47112 * 94.99932 * 17 16 15 19 19 C 1.36943 * 120.00347 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99145 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00269 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47442 * 89.99940 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00180 * 23 21 19 26 26 H 1.48499 * 109.47101 * 329.99608 * 23 21 19 27 27 N 1.33778 * 106.49193 * 359.97438 * 16 15 14 28 28 N 1.28633 * 108.88927 * 359.74045 * 27 16 15 29 29 C 1.47026 * 125.64203 * 180.02562 * 9 7 4 30 30 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47667 * 299.99447 * 1 2 3 32 32 H 1.09005 * 109.47360 * 59.99899 * 1 2 3 33 33 H 1.09007 * 109.46839 * 60.00099 * 3 2 1 34 34 H 1.08997 * 109.47402 * 300.00647 * 3 2 1 35 35 H 1.08999 * 109.47233 * 60.00577 * 6 4 3 36 36 H 1.09006 * 109.46266 * 179.97438 * 6 4 3 37 37 H 1.08991 * 109.47255 * 299.99753 * 6 4 3 38 38 H 1.09002 * 110.36926 * 274.73432 * 10 9 7 39 39 H 1.08995 * 110.36556 * 36.94716 * 10 9 7 40 40 H 1.09002 * 111.00852 * 155.13877 * 11 10 9 41 41 H 1.09004 * 111.00578 * 278.99532 * 11 10 9 42 42 H 1.07999 * 126.91880 * 0.02562 * 15 14 12 43 43 H 1.09003 * 109.47063 * 214.99352 * 17 16 15 44 44 H 1.08998 * 109.47409 * 334.99386 * 17 16 15 45 45 H 0.97003 * 120.00009 * 359.97438 * 18 17 16 46 46 H 0.97007 * 119.99609 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.88266 * 300.45023 * 29 9 7 48 48 H 1.09000 * 109.88221 * 61.61840 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5685 -0.8409 6 6 3.9951 0.5371 1.3084 7 6 4.1478 2.5562 -0.1231 8 8 3.4347 3.5339 -0.2034 9 7 5.4882 2.6961 -0.1445 10 6 6.4682 1.5985 -0.0550 11 6 7.7495 2.1517 -0.7273 12 6 7.7220 3.6368 -0.2687 13 1 8.1457 3.7424 0.7301 14 7 8.4351 4.4875 -1.2248 15 6 8.5711 4.2495 -2.5498 16 6 9.2949 5.2803 -3.0457 17 6 9.7165 5.4789 -4.4787 18 7 8.7477 6.3430 -5.1575 19 6 8.9243 6.6658 -6.4766 20 1 9.7778 6.2829 -7.0165 21 6 8.0061 7.4842 -7.1199 22 7 6.9653 7.9495 -6.4622 23 14 8.2468 7.9239 -8.9194 24 1 7.5688 6.9136 -9.7708 25 1 7.6651 9.2644 -9.1834 26 1 9.6978 7.9432 -9.2344 27 7 9.5622 6.0879 -2.0133 28 7 9.0341 5.5931 -0.9498 29 6 6.2150 3.9690 -0.2599 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6885 1.8464 0.8901 34 1 1.6884 1.8465 -0.8899 35 1 3.5522 -0.4549 1.3979 36 1 5.0818 0.4507 1.3086 37 1 3.6791 1.1534 2.1499 38 1 6.6644 1.3491 0.9878 39 1 6.1062 0.7220 -0.5923 40 1 8.6378 1.6419 -0.3542 41 1 7.6847 2.0767 -1.8128 42 1 8.1800 3.4072 -3.1011 43 1 10.7013 5.9454 -4.5064 44 1 9.7577 4.5132 -4.9826 45 1 7.9810 6.6866 -4.6726 46 1 6.3234 8.5211 -6.9120 47 1 5.9406 4.4697 -1.1884 48 1 5.9810 4.6080 0.5915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098645610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:22 Heat of formation + Delta-G solvation = 44.612448 kcal Electronic energy + Delta-G solvation = -28995.112295 eV Core-core repulsion = 24895.574375 eV Total energy + Delta-G solvation = -4099.537921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.08242 -40.77969 -38.63518 -37.81199 -35.11645 -34.47078 -33.68606 -31.94320 -30.92233 -29.98654 -29.30090 -27.73133 -26.28684 -25.88431 -25.08375 -23.23905 -22.77521 -22.48452 -20.89072 -20.57867 -19.67102 -18.11593 -17.58058 -17.02608 -16.61659 -16.47102 -16.40212 -15.75579 -15.71858 -15.17245 -14.85569 -14.55504 -14.52593 -14.08239 -14.01934 -13.67823 -13.44661 -13.21658 -13.06929 -12.82194 -12.78197 -12.63157 -12.44453 -12.31161 -11.96759 -11.89519 -11.76328 -11.56244 -11.30217 -11.24493 -10.88688 -10.79329 -10.46510 -10.22515 -10.08170 -10.07951 -9.90239 -9.71952 -9.19276 -8.89489 -8.85116 -6.90378 -5.71879 -3.01972 1.71371 2.04174 2.19731 2.54391 2.88244 3.34070 3.46963 3.51917 3.54322 3.62217 3.79223 4.10180 4.22895 4.35071 4.40311 4.49576 4.55504 4.64245 4.73011 4.78224 4.90557 4.94023 4.97207 5.07849 5.14595 5.17141 5.22451 5.25636 5.27668 5.30468 5.34701 5.39037 5.45798 5.49406 5.62701 5.65779 5.71086 5.82689 6.18257 6.38187 6.63937 6.69146 6.71519 6.77597 6.92887 7.68386 7.72541 8.45018 8.79812 9.56728 10.12309 10.47985 11.50755 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.002416 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.103624 B =11587.507655 C =13405.918448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.079 3.921 4 C -0.104 4.104 5 H 0.108 0.892 6 C -0.147 4.147 7 C 0.539 3.461 8 O -0.529 6.529 9 N -0.616 5.616 10 C 0.100 3.900 11 C -0.144 4.144 12 C 0.138 3.862 13 H 0.130 0.870 14 N -0.295 5.295 15 C -0.042 4.042 16 C -0.002 4.002 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.093 5.093 29 C 0.099 3.901 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.187 0.813 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.085 0.915 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 -22.883 19.414 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.002 3.998 4 C -0.125 4.125 5 H 0.126 0.874 6 C -0.205 4.205 7 C 0.328 3.672 8 O -0.404 6.404 9 N -0.352 5.352 10 C -0.023 4.023 11 C -0.183 4.183 12 C 0.034 3.966 13 H 0.148 0.852 14 N -0.089 5.089 15 C -0.192 4.192 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.071 5.071 29 C -0.025 4.025 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.236 -21.485 20.329 30.228 hybrid contribution -0.781 -0.136 -1.612 1.797 sum -7.017 -21.621 18.717 29.445 Atomic orbital electron populations 1.22746 0.80457 1.02796 1.00340 1.87782 1.20103 1.27686 1.95580 1.22224 0.91208 0.84417 1.01986 1.21110 0.95441 0.93911 1.02037 0.87378 1.21885 1.01827 1.01845 0.94903 1.20140 0.80146 0.91135 0.75821 1.90776 1.59755 1.40905 1.48995 1.48287 1.05054 1.07938 1.73929 1.22507 0.87476 0.90906 1.01441 1.23363 0.99088 0.92508 1.03298 1.22547 0.91497 0.89217 0.93292 0.85236 1.47108 1.36957 1.17364 1.07465 1.23279 1.06807 1.04803 0.84347 1.22483 1.01111 0.92326 0.98023 1.18952 0.93918 0.95108 0.81695 1.42309 1.27308 1.57812 1.09645 1.19220 1.06888 1.24542 0.86505 0.90874 1.24770 0.97427 1.00406 0.98331 1.69685 1.14059 1.38370 1.35819 0.86156 0.77423 0.77515 0.84879 1.21744 1.21788 1.20654 1.75113 1.17580 1.23448 0.95625 1.78295 1.10538 0.96258 1.22010 1.22247 0.88772 0.86841 1.04656 0.89461 0.93942 0.93809 0.92366 0.92047 0.90388 0.91505 0.92133 0.89850 0.89005 0.87735 0.88512 0.79593 0.94271 0.94498 0.78100 0.93485 0.89710 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.36 10.24 -35.23 -0.36 -3.72 16 3 C 0.08 0.69 4.67 37.16 0.17 0.87 16 4 C -0.10 -0.78 2.31 -91.77 -0.21 -1.00 16 5 H 0.11 0.70 7.84 -51.93 -0.41 0.29 16 6 C -0.15 -0.79 8.90 37.16 0.33 -0.46 16 7 C 0.54 5.65 7.21 -10.98 -0.08 5.57 16 8 O -0.53 -7.93 16.25 5.56 0.09 -7.84 16 9 N -0.62 -5.20 3.32 -170.53 -0.57 -5.77 16 10 C 0.10 0.43 5.13 -2.53 -0.01 0.42 16 11 C -0.14 -0.73 6.45 -24.43 -0.16 -0.89 16 12 C 0.14 1.17 4.02 -65.94 -0.26 0.90 16 13 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 14 N -0.29 -3.96 3.30 -52.83 -0.17 -4.14 16 15 C -0.04 -0.62 10.60 -17.04 -0.18 -0.80 16 16 C 0.00 -0.04 6.62 -82.77 -0.55 -0.58 16 17 C 0.23 4.89 6.82 -5.20 -0.04 4.85 16 18 N -0.73 -19.20 5.59 -61.09 -0.34 -19.54 16 19 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 23 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 N -0.25 -5.08 12.41 33.29 0.41 -4.66 16 28 N -0.09 -1.61 13.17 60.35 0.79 -0.82 16 29 C 0.10 1.01 6.62 -3.06 -0.02 0.99 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 35 H 0.08 0.41 7.82 -51.93 -0.41 0.00 16 36 H 0.07 0.23 4.99 -51.93 -0.26 -0.03 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.20 7.07 -51.93 -0.37 -0.17 16 39 H 0.09 0.27 7.35 -51.93 -0.38 -0.12 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.56 6.28 -51.93 -0.33 0.23 16 42 H 0.19 2.13 6.84 -52.49 -0.36 1.77 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.39 11.07 7.66 -40.82 -0.31 10.75 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 47 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -37.82 393.46 -6.08 -43.90 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.42 Total: 3.64 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.14 Total: 3.70 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: 0.85 Total: -63.37 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.27 Total: -11.56 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.82 -6.08 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.515 kcal (2) G-P(sol) polarization free energy of solvation -37.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds