Wall clock time and date at job start Tue Mar 31 2020 20:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99567 * 2 1 4 4 C 1.53000 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.47039 * 55.00025 * 4 3 2 6 6 C 1.53007 * 109.46753 * 295.00139 * 4 3 2 7 7 C 1.50701 * 109.47008 * 175.00415 * 4 3 2 8 8 O 1.21278 * 120.00429 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99396 * 180.02562 * 7 4 3 10 10 C 1.47419 * 125.65221 * 359.97078 * 9 7 4 11 11 C 1.54905 * 104.92834 * 155.83963 * 10 9 7 12 12 C 1.55448 * 101.45165 * 37.00468 * 11 10 9 13 13 H 1.08998 * 110.85957 * 82.96191 * 12 11 10 14 14 N 1.46505 * 110.70786 * 206.14333 * 12 11 10 15 15 C 1.35310 * 125.86534 * 28.55485 * 14 12 11 16 16 C 1.35358 * 106.17459 * 179.97438 * 15 14 12 17 17 C 1.50694 * 126.75208 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47112 * 94.99932 * 17 16 15 19 19 C 1.36943 * 120.00347 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99145 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00269 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47442 * 89.99940 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00180 * 23 21 19 26 26 H 1.48499 * 109.47101 * 329.99608 * 23 21 19 27 27 N 1.33778 * 106.49193 * 359.97438 * 16 15 14 28 28 N 1.28633 * 108.88927 * 359.74045 * 27 16 15 29 29 C 1.47026 * 125.64203 * 180.02562 * 9 7 4 30 30 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47667 * 299.99447 * 1 2 3 32 32 H 1.09005 * 109.47360 * 59.99899 * 1 2 3 33 33 H 1.09007 * 109.46839 * 60.00099 * 3 2 1 34 34 H 1.08997 * 109.47402 * 300.00647 * 3 2 1 35 35 H 1.08999 * 109.47233 * 60.00577 * 6 4 3 36 36 H 1.09006 * 109.46266 * 179.97438 * 6 4 3 37 37 H 1.08991 * 109.47255 * 299.99753 * 6 4 3 38 38 H 1.09002 * 110.36926 * 274.73432 * 10 9 7 39 39 H 1.08995 * 110.36556 * 36.94716 * 10 9 7 40 40 H 1.09002 * 111.00852 * 155.13877 * 11 10 9 41 41 H 1.09004 * 111.00578 * 278.99532 * 11 10 9 42 42 H 1.07999 * 126.91880 * 0.02562 * 15 14 12 43 43 H 1.09003 * 109.47063 * 214.99352 * 17 16 15 44 44 H 1.08998 * 109.47409 * 334.99386 * 17 16 15 45 45 H 0.97003 * 120.00009 * 359.97438 * 18 17 16 46 46 H 0.97007 * 119.99609 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.88266 * 300.45023 * 29 9 7 48 48 H 1.09000 * 109.88221 * 61.61840 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5685 -0.8409 6 6 3.9951 0.5371 1.3084 7 6 4.1478 2.5562 -0.1231 8 8 3.4347 3.5339 -0.2034 9 7 5.4882 2.6961 -0.1445 10 6 6.4682 1.5985 -0.0550 11 6 7.7495 2.1517 -0.7273 12 6 7.7220 3.6368 -0.2687 13 1 8.1457 3.7424 0.7301 14 7 8.4351 4.4875 -1.2248 15 6 8.5711 4.2495 -2.5498 16 6 9.2949 5.2803 -3.0457 17 6 9.7165 5.4789 -4.4787 18 7 8.7477 6.3430 -5.1575 19 6 8.9243 6.6658 -6.4766 20 1 9.7778 6.2829 -7.0165 21 6 8.0061 7.4842 -7.1199 22 7 6.9653 7.9495 -6.4622 23 14 8.2468 7.9239 -8.9194 24 1 7.5688 6.9136 -9.7708 25 1 7.6651 9.2644 -9.1834 26 1 9.6978 7.9432 -9.2344 27 7 9.5622 6.0879 -2.0133 28 7 9.0341 5.5931 -0.9498 29 6 6.2150 3.9690 -0.2599 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6885 1.8464 0.8901 34 1 1.6884 1.8465 -0.8899 35 1 3.5522 -0.4549 1.3979 36 1 5.0818 0.4507 1.3086 37 1 3.6791 1.1534 2.1499 38 1 6.6644 1.3491 0.9878 39 1 6.1062 0.7220 -0.5923 40 1 8.6378 1.6419 -0.3542 41 1 7.6847 2.0767 -1.8128 42 1 8.1800 3.4072 -3.1011 43 1 10.7013 5.9454 -4.5064 44 1 9.7577 4.5132 -4.9826 45 1 7.9810 6.6866 -4.6726 46 1 6.3234 8.5211 -6.9120 47 1 5.9406 4.4697 -1.1884 48 1 5.9810 4.6080 0.5915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098645610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:21 Heat of formation + Delta-G solvation = 15.202652 kcal Electronic energy + Delta-G solvation = -28996.387600 eV Core-core repulsion = 24895.574375 eV Total energy + Delta-G solvation = -4100.813225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.33182 -41.52897 -39.32194 -38.56217 -36.84194 -35.49315 -34.58844 -33.68656 -31.81599 -31.57094 -30.09504 -28.27292 -27.66191 -26.83970 -25.88166 -24.84171 -24.00820 -23.15043 -22.18621 -21.59121 -20.34220 -19.41958 -18.80873 -18.17984 -17.55959 -17.23751 -17.16634 -16.74463 -16.54870 -16.41573 -15.97260 -15.82423 -15.48269 -15.24279 -15.06694 -14.80732 -14.55610 -14.28521 -13.99768 -13.86940 -13.62629 -13.52647 -13.28311 -13.03931 -13.01487 -12.90778 -12.77925 -12.58290 -12.39254 -12.33210 -12.09977 -12.06720 -11.89304 -11.84024 -11.76229 -11.17463 -10.97145 -10.94220 -10.71601 -10.25051 -9.91049 -9.03678 -7.94491 -5.25369 0.52200 1.14680 1.41334 1.42913 1.49904 1.51376 1.60233 1.76634 2.58544 2.75849 3.01482 3.13653 3.35364 3.42047 3.46886 3.68580 3.81395 3.83152 3.91819 3.94428 4.08228 4.19459 4.22507 4.27477 4.35938 4.43046 4.45599 4.48977 4.54209 4.60671 4.62599 4.65079 4.78915 4.83509 4.85513 4.89423 4.94839 4.99713 5.06142 5.11005 5.18228 5.31559 5.49921 5.64086 6.07978 6.24613 6.24709 6.91457 7.31235 7.47664 8.02912 8.28258 9.29553 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.002416 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.103624 B =11587.507655 C =13405.918448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.079 3.921 4 C -0.095 4.095 5 H 0.126 0.874 6 C -0.141 4.141 7 C 0.533 3.467 8 O -0.588 6.588 9 N -0.611 5.611 10 C 0.095 3.905 11 C -0.133 4.133 12 C 0.132 3.868 13 H 0.156 0.844 14 N -0.277 5.277 15 C -0.016 4.016 16 C -0.036 4.036 17 C 0.235 3.765 18 N -0.741 5.741 19 C -0.242 4.242 20 H 0.087 0.913 21 C -0.081 4.081 22 N -0.975 5.975 23 Si 0.981 3.019 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.265 1.265 27 N -0.296 5.296 28 N -0.108 5.108 29 C 0.100 3.900 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.223 0.777 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.369 0.631 46 H 0.250 0.750 47 H 0.044 0.956 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -26.680 19.945 33.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.002 3.998 4 C -0.116 4.116 5 H 0.144 0.856 6 C -0.198 4.198 7 C 0.323 3.677 8 O -0.468 6.468 9 N -0.345 5.345 10 C -0.026 4.026 11 C -0.172 4.172 12 C 0.031 3.969 13 H 0.173 0.827 14 N -0.071 5.071 15 C -0.168 4.168 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.383 5.383 19 C -0.373 4.373 20 H 0.105 0.895 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.809 3.191 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.190 1.190 27 N -0.163 5.163 28 N -0.087 5.087 29 C -0.025 4.025 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.112 0.888 42 H 0.240 0.760 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.199 0.801 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.991 -25.353 20.899 33.233 hybrid contribution -1.177 0.955 -1.664 2.251 sum -6.168 -24.398 19.235 31.675 Atomic orbital electron populations 1.22939 0.79409 1.04147 1.00570 1.87757 1.21329 1.27178 1.95567 1.22148 0.92498 0.84484 1.00651 1.21106 0.94160 0.92213 1.04153 0.85574 1.21884 1.03495 1.01472 0.92921 1.20759 0.80505 0.91630 0.74808 1.90749 1.61320 1.42905 1.51804 1.48347 1.05064 1.08496 1.72583 1.22939 0.85763 0.90048 1.03873 1.23482 1.00890 0.89405 1.03375 1.23069 0.89508 0.90642 0.93722 0.82680 1.47454 1.35341 1.16397 1.07941 1.23647 1.04207 1.04190 0.84724 1.22302 1.03811 0.94212 0.97087 1.18997 0.92141 0.94994 0.83169 1.42544 1.27781 1.58652 1.09352 1.19719 1.06648 1.23423 0.87504 0.89490 1.25690 0.97495 1.01130 1.02974 1.69875 1.15322 1.39763 1.37665 0.85034 0.78015 0.76591 0.79473 1.20936 1.22701 1.18956 1.75038 1.19500 1.25105 0.96658 1.78175 1.11427 0.97684 1.21378 1.22062 0.90381 0.87785 1.02231 0.87542 0.93390 0.93988 0.93181 0.94128 0.89778 0.88877 0.93006 0.86605 0.86459 0.84328 0.88786 0.76034 0.95118 0.91697 0.80052 0.94166 0.93784 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.40 10.24 -148.98 -1.53 -7.92 16 3 C 0.08 1.40 4.67 71.98 0.34 1.74 16 4 C -0.10 -1.28 2.31 -11.54 -0.03 -1.31 16 5 H 0.13 1.25 7.84 -2.39 -0.02 1.23 16 6 C -0.14 -1.07 8.90 71.98 0.64 -0.42 16 7 C 0.53 10.91 7.21 87.66 0.63 11.54 16 8 O -0.59 -18.61 16.25 -3.02 -0.05 -18.66 16 9 N -0.61 -9.17 3.32 -811.81 -2.70 -11.87 16 10 C 0.09 0.37 5.13 86.85 0.45 0.81 16 11 C -0.13 -0.72 6.45 32.09 0.21 -0.51 16 12 C 0.13 1.89 4.02 46.28 0.19 2.08 16 13 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 14 N -0.28 -7.06 3.30 -321.05 -1.06 -8.12 16 15 C -0.02 -0.45 10.60 83.49 0.88 0.43 16 16 C -0.04 -1.35 6.62 41.60 0.28 -1.08 16 17 C 0.23 9.83 6.82 85.63 0.58 10.41 16 18 N -0.74 -39.75 5.59 -347.19 -1.94 -41.69 16 19 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 20 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 22 N -0.98 -62.81 13.06 21.65 0.28 -62.52 16 23 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 27 N -0.30 -12.24 12.41 -48.60 -0.60 -12.85 16 28 N -0.11 -3.76 13.17 37.02 0.49 -3.27 16 29 C 0.10 2.00 6.62 86.73 0.57 2.57 16 30 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.04 0.86 7.96 -2.39 -0.02 0.84 16 35 H 0.08 0.60 7.82 -2.39 -0.02 0.58 16 36 H 0.09 0.19 4.99 -2.38 -0.01 0.18 16 37 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.12 -0.17 7.07 -2.39 -0.02 -0.19 16 39 H 0.12 -0.01 7.35 -2.39 -0.02 -0.03 16 40 H 0.14 -0.05 8.14 -2.39 -0.02 -0.06 16 41 H 0.09 0.63 6.28 -2.38 -0.01 0.62 16 42 H 0.22 4.35 6.84 -2.91 -0.02 4.33 16 43 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.37 21.90 7.66 -92.71 -0.71 21.19 16 46 H 0.25 15.58 8.31 -92.70 -0.77 14.81 16 47 H 0.04 1.25 8.03 -2.39 -0.02 1.23 16 48 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -88.04 393.46 2.48 -85.56 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.27 Total: 21.61 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 7.29 Total: 10.51 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -5.53 Total: -140.32 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.57 Total: -26.58 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -88.04 2.48 -85.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.762 kcal (2) G-P(sol) polarization free energy of solvation -88.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds