Wall clock time and date at job start Tue Mar 31 2020 20:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00022 * 2 1 4 4 C 1.53008 * 109.46745 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47214 * 305.00047 * 4 3 2 6 6 C 1.52995 * 109.46973 * 65.00384 * 4 3 2 7 7 C 1.50701 * 109.46657 * 184.99745 * 4 3 2 8 8 O 1.21279 * 120.00567 * 327.53436 * 7 4 3 9 9 N 1.34787 * 119.99571 * 147.53484 * 7 4 3 10 10 C 1.47018 * 125.64725 * 175.13854 * 9 7 4 11 11 C 1.54323 * 107.27132 * 178.89423 * 10 9 7 12 12 C 1.55155 * 102.94097 * 337.80876 * 11 10 9 13 13 H 1.08999 * 111.00757 * 277.38828 * 12 11 10 14 14 N 1.46506 * 111.00148 * 153.57277 * 12 11 10 15 15 C 1.35312 * 125.86957 * 326.43579 * 14 12 11 16 16 C 1.35347 * 106.17237 * 180.02562 * 15 14 12 17 17 C 1.50704 * 126.74991 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.46701 * 95.00627 * 17 16 15 19 19 C 1.36943 * 120.00010 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99599 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99935 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99533 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00079 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00168 * 23 21 19 25 25 H 1.48497 * 109.47296 * 209.99896 * 23 21 19 26 26 H 1.48496 * 109.47522 * 329.99973 * 23 21 19 27 27 N 1.33772 * 106.50135 * 0.02562 * 16 15 14 28 28 N 1.28636 * 108.88018 * 359.97438 * 27 16 15 29 29 C 1.47419 * 125.64803 * 355.08625 * 9 7 4 30 30 H 1.08996 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46895 * 300.00311 * 1 2 3 32 32 H 1.08997 * 109.46833 * 59.99799 * 1 2 3 33 33 H 1.09002 * 109.47199 * 60.00103 * 3 2 1 34 34 H 1.08994 * 109.47204 * 299.99859 * 3 2 1 35 35 H 1.09002 * 109.46964 * 185.28438 * 6 4 3 36 36 H 1.09007 * 109.46960 * 305.27979 * 6 4 3 37 37 H 1.09003 * 109.47421 * 65.28171 * 6 4 3 38 38 H 1.09009 * 109.88193 * 59.48183 * 10 9 7 39 39 H 1.08998 * 110.01506 * 298.38622 * 10 9 7 40 40 H 1.08997 * 110.72084 * 219.44233 * 11 10 9 41 41 H 1.09002 * 110.71641 * 96.17456 * 11 10 9 42 42 H 1.07999 * 126.90920 * 0.02562 * 15 14 12 43 43 H 1.08994 * 109.47536 * 215.00574 * 17 16 15 44 44 H 1.09004 * 109.47359 * 335.01332 * 17 16 15 45 45 H 0.97002 * 119.99964 * 0.02562 * 18 17 16 46 46 H 0.96998 * 119.99463 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.36679 * 85.33455 * 29 9 7 48 48 H 1.09001 * 110.36676 * 323.01403 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5684 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1480 2.5559 0.1244 8 8 3.5890 3.5159 -0.3621 9 7 5.3171 2.7154 0.7758 10 6 6.0732 3.9717 0.8841 11 6 7.3240 3.6814 1.7401 12 6 6.9126 2.4162 2.5385 13 1 6.3241 2.6823 3.4165 14 7 8.0887 1.6287 2.9170 15 6 9.2234 1.4995 2.1913 16 6 10.0388 0.6906 2.9074 17 6 11.4256 0.2414 2.5251 18 7 12.4139 1.1313 3.1396 19 6 13.7504 0.9179 2.9315 20 1 14.0760 0.0933 2.3147 21 6 14.6868 1.7608 3.5142 22 7 15.9715 1.5553 3.3146 23 14 14.1238 3.1865 4.5817 24 1 14.0175 2.7365 5.9929 25 1 15.1085 4.2940 4.4881 26 1 12.7976 3.6624 4.1128 27 7 9.3717 0.3684 4.0212 28 7 8.2197 0.9403 3.9966 29 6 6.0490 1.6594 1.4987 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 5.0719 0.3644 -1.2673 36 1 3.4810 -0.4147 -1.4417 37 1 3.7641 1.1974 -2.1414 38 1 5.4608 4.7323 1.3686 39 1 6.3731 4.3131 -0.1066 40 1 7.5313 4.5123 2.4143 41 1 8.1857 3.4739 1.1057 42 1 9.4356 1.9509 1.2334 43 1 11.5869 -0.7780 2.8757 44 1 11.5321 0.2738 1.4408 45 1 12.1214 1.8717 3.6940 46 1 16.6258 2.1441 3.7221 47 1 6.6848 1.1005 0.8121 48 1 5.3508 0.9897 2.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098645611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:24 Heat of formation + Delta-G solvation = 45.280084 kcal Electronic energy + Delta-G solvation = -28925.838811 eV Core-core repulsion = 24826.329842 eV Total energy + Delta-G solvation = -4099.508970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.26699 -40.88722 -38.78162 -37.97096 -35.30190 -34.36435 -34.01026 -32.05138 -31.16541 -30.39284 -29.37218 -27.90823 -26.36124 -26.29072 -25.13852 -23.71893 -22.55763 -22.17818 -21.00504 -20.80773 -19.65111 -18.32721 -18.01440 -17.33582 -16.95007 -16.45963 -16.26549 -16.07650 -15.82392 -15.23137 -14.91049 -14.69514 -14.50728 -14.22294 -14.06522 -14.05428 -13.68903 -13.44512 -13.07542 -12.98918 -12.79282 -12.64508 -12.52801 -12.44269 -12.19652 -12.03092 -11.82756 -11.67814 -11.52947 -11.38062 -11.16440 -10.89713 -10.64005 -10.41403 -10.19659 -10.16673 -10.03385 -9.60945 -9.36999 -9.09095 -8.91943 -7.25643 -5.77455 -3.13417 1.54502 1.83199 2.01495 2.36999 2.68074 3.26281 3.37470 3.42781 3.46208 3.56674 3.66548 3.96731 4.13733 4.23144 4.31937 4.42721 4.48059 4.56289 4.59592 4.63999 4.81387 4.85328 4.85998 4.95095 5.05751 5.07928 5.10452 5.12990 5.16555 5.19114 5.26477 5.28889 5.35632 5.38198 5.51736 5.56823 5.65107 5.69851 5.69945 6.18831 6.50869 6.53422 6.58402 6.63013 6.74880 7.50535 7.96748 8.41115 8.61100 9.18961 9.91468 10.11178 11.40590 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.002086 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.395484 B =13417.038335 C =13825.821486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.078 3.922 4 C -0.107 4.107 5 H 0.100 0.900 6 C -0.138 4.138 7 C 0.543 3.457 8 O -0.531 6.531 9 N -0.616 5.616 10 C 0.110 3.890 11 C -0.143 4.143 12 C 0.135 3.865 13 H 0.131 0.869 14 N -0.294 5.294 15 C -0.042 4.042 16 C -0.007 4.007 17 C 0.237 3.763 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.094 0.906 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.250 5.250 28 N -0.091 5.091 29 C 0.092 3.908 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.190 0.810 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.086 0.914 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.734 1.867 -9.047 33.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C 0.001 3.999 4 C -0.129 4.129 5 H 0.118 0.882 6 C -0.195 4.195 7 C 0.332 3.668 8 O -0.407 6.407 9 N -0.352 5.352 10 C -0.012 4.012 11 C -0.182 4.182 12 C 0.031 3.969 13 H 0.149 0.851 14 N -0.088 5.088 15 C -0.192 4.192 16 C -0.145 4.145 17 C 0.108 3.892 18 N -0.396 5.396 19 C -0.374 4.374 20 H 0.111 0.889 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.069 5.069 29 C -0.032 4.032 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.207 0.793 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -32.464 1.672 -8.122 33.506 hybrid contribution 0.015 1.763 -0.093 1.765 sum -32.449 3.435 -8.215 33.649 Atomic orbital electron populations 1.22759 0.80404 1.02979 1.00231 1.87819 1.20127 1.27420 1.95527 1.22238 0.91260 0.84769 1.01625 1.21206 0.95387 0.93858 1.02401 0.88179 1.21680 1.01649 1.01684 0.94502 1.20111 0.78943 0.90795 0.76949 1.90739 1.60544 1.41958 1.47437 1.48337 1.22194 1.11204 1.53440 1.21959 0.91410 0.86874 1.00989 1.23176 0.98776 0.97153 0.99059 1.22614 0.84339 0.90426 0.99493 0.85075 1.47063 1.12948 1.33945 1.14797 1.23350 0.87769 1.05939 1.02180 1.22543 0.99546 1.00105 0.92299 1.18934 0.79470 0.94474 0.96299 1.42648 1.02839 1.33498 1.60576 1.19038 0.80102 1.11891 1.26361 0.88861 1.24632 0.95025 0.98987 1.00217 1.69698 0.99431 1.40280 1.48564 0.86550 0.77359 0.83214 0.81374 1.20957 1.21721 1.20651 1.75139 0.98638 1.18284 1.19735 1.78322 1.15584 1.07736 1.05243 1.22671 0.95865 0.90780 0.93919 0.89324 0.93936 0.93847 0.92900 0.91774 0.91966 0.90127 0.91846 0.90209 0.90014 0.87889 0.88471 0.79317 0.93362 0.93569 0.80504 0.93015 0.89566 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.04 10.15 -35.23 -0.36 -3.40 16 3 C 0.08 0.58 4.86 37.16 0.18 0.76 16 4 C -0.11 -0.75 2.63 -91.77 -0.24 -0.99 16 5 H 0.10 0.60 6.43 -51.93 -0.33 0.27 16 6 C -0.14 -0.89 9.13 37.16 0.34 -0.55 16 7 C 0.54 4.71 6.87 -10.98 -0.08 4.63 16 8 O -0.53 -6.34 16.66 5.56 0.09 -6.24 16 9 N -0.62 -4.31 3.33 -170.52 -0.57 -4.87 16 10 C 0.11 0.67 6.87 -3.07 -0.02 0.65 16 11 C -0.14 -0.82 6.38 -24.90 -0.16 -0.98 16 12 C 0.14 0.98 4.08 -65.78 -0.27 0.71 16 13 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 14 N -0.29 -3.40 3.37 -52.68 -0.18 -3.57 16 15 C -0.04 -0.54 10.59 -17.05 -0.18 -0.72 16 16 C -0.01 -0.12 6.61 -82.78 -0.55 -0.67 16 17 C 0.24 4.56 6.82 -5.19 -0.04 4.53 16 18 N -0.75 -17.96 5.40 -61.08 -0.33 -18.29 16 19 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 20 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 23 Si 0.88 22.43 27.73 -169.99 -4.71 17.72 16 24 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 27 N -0.25 -4.57 12.41 33.29 0.41 -4.16 16 28 N -0.09 -1.40 13.16 60.35 0.79 -0.60 16 29 C 0.09 0.57 6.26 -2.53 -0.02 0.55 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.50 8.01 -51.93 -0.42 0.09 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.51 7.69 -51.92 -0.40 0.11 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.55 6.39 -51.93 -0.33 0.22 16 42 H 0.19 1.77 7.02 -52.49 -0.37 1.40 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.36 8.76 5.52 -40.82 -0.23 8.54 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.51 6.86 -51.93 -0.36 0.16 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -36.32 395.15 -5.80 -42.13 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.52 Total: 1.40 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.17 Total: 2.30 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.91 Total: -59.85 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.27 Total: -9.64 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.32 -5.80 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.405 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds