Wall clock time and date at job start Tue Mar 31 2020 20:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00022 * 2 1 4 4 C 1.53008 * 109.46745 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47214 * 305.00047 * 4 3 2 6 6 C 1.52995 * 109.46973 * 65.00384 * 4 3 2 7 7 C 1.50701 * 109.46657 * 184.99745 * 4 3 2 8 8 O 1.21279 * 120.00567 * 327.53436 * 7 4 3 9 9 N 1.34787 * 119.99571 * 147.53484 * 7 4 3 10 10 C 1.47018 * 125.64725 * 175.13854 * 9 7 4 11 11 C 1.54323 * 107.27132 * 178.89423 * 10 9 7 12 12 C 1.55155 * 102.94097 * 337.80876 * 11 10 9 13 13 H 1.08999 * 111.00757 * 277.38828 * 12 11 10 14 14 N 1.46506 * 111.00148 * 153.57277 * 12 11 10 15 15 C 1.35312 * 125.86957 * 326.43579 * 14 12 11 16 16 C 1.35347 * 106.17237 * 180.02562 * 15 14 12 17 17 C 1.50704 * 126.74991 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.46701 * 95.00627 * 17 16 15 19 19 C 1.36943 * 120.00010 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99599 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99935 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99533 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00079 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00168 * 23 21 19 25 25 H 1.48497 * 109.47296 * 209.99896 * 23 21 19 26 26 H 1.48496 * 109.47522 * 329.99973 * 23 21 19 27 27 N 1.33772 * 106.50135 * 0.02562 * 16 15 14 28 28 N 1.28636 * 108.88018 * 359.97438 * 27 16 15 29 29 C 1.47419 * 125.64803 * 355.08625 * 9 7 4 30 30 H 1.08996 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46895 * 300.00311 * 1 2 3 32 32 H 1.08997 * 109.46833 * 59.99799 * 1 2 3 33 33 H 1.09002 * 109.47199 * 60.00103 * 3 2 1 34 34 H 1.08994 * 109.47204 * 299.99859 * 3 2 1 35 35 H 1.09002 * 109.46964 * 185.28438 * 6 4 3 36 36 H 1.09007 * 109.46960 * 305.27979 * 6 4 3 37 37 H 1.09003 * 109.47421 * 65.28171 * 6 4 3 38 38 H 1.09009 * 109.88193 * 59.48183 * 10 9 7 39 39 H 1.08998 * 110.01506 * 298.38622 * 10 9 7 40 40 H 1.08997 * 110.72084 * 219.44233 * 11 10 9 41 41 H 1.09002 * 110.71641 * 96.17456 * 11 10 9 42 42 H 1.07999 * 126.90920 * 0.02562 * 15 14 12 43 43 H 1.08994 * 109.47536 * 215.00574 * 17 16 15 44 44 H 1.09004 * 109.47359 * 335.01332 * 17 16 15 45 45 H 0.97002 * 119.99964 * 0.02562 * 18 17 16 46 46 H 0.96998 * 119.99463 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.36679 * 85.33455 * 29 9 7 48 48 H 1.09001 * 110.36676 * 323.01403 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5684 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1480 2.5559 0.1244 8 8 3.5890 3.5159 -0.3621 9 7 5.3171 2.7154 0.7758 10 6 6.0732 3.9717 0.8841 11 6 7.3240 3.6814 1.7401 12 6 6.9126 2.4162 2.5385 13 1 6.3241 2.6823 3.4165 14 7 8.0887 1.6287 2.9170 15 6 9.2234 1.4995 2.1913 16 6 10.0388 0.6906 2.9074 17 6 11.4256 0.2414 2.5251 18 7 12.4139 1.1313 3.1396 19 6 13.7504 0.9179 2.9315 20 1 14.0760 0.0933 2.3147 21 6 14.6868 1.7608 3.5142 22 7 15.9715 1.5553 3.3146 23 14 14.1238 3.1865 4.5817 24 1 14.0175 2.7365 5.9929 25 1 15.1085 4.2940 4.4881 26 1 12.7976 3.6624 4.1128 27 7 9.3717 0.3684 4.0212 28 7 8.2197 0.9403 3.9966 29 6 6.0490 1.6594 1.4987 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 5.0719 0.3644 -1.2673 36 1 3.4810 -0.4147 -1.4417 37 1 3.7641 1.1974 -2.1414 38 1 5.4608 4.7323 1.3686 39 1 6.3731 4.3131 -0.1066 40 1 7.5313 4.5123 2.4143 41 1 8.1857 3.4739 1.1057 42 1 9.4356 1.9509 1.2334 43 1 11.5869 -0.7780 2.8757 44 1 11.5321 0.2738 1.4408 45 1 12.1214 1.8717 3.6940 46 1 16.6258 2.1441 3.7221 47 1 6.6848 1.1005 0.8121 48 1 5.3508 0.9897 2.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098645611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:24 Heat of formation + Delta-G solvation = 18.261146 kcal Electronic energy + Delta-G solvation = -28927.010440 eV Core-core repulsion = 24826.329842 eV Total energy + Delta-G solvation = -4100.680599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.34376 -41.51351 -39.36590 -38.59177 -36.98149 -35.26651 -34.75805 -33.80811 -32.09924 -31.74087 -30.02596 -28.37469 -27.90870 -26.85558 -25.77831 -24.56021 -24.28560 -22.90970 -22.21494 -21.63886 -20.22755 -19.90709 -18.88967 -18.32056 -17.60743 -17.24936 -16.93082 -16.73664 -16.57378 -16.44135 -16.07687 -15.80414 -15.60776 -15.21142 -14.97466 -14.77000 -14.57507 -14.35998 -14.24964 -14.09685 -13.74300 -13.51076 -13.42977 -13.21874 -13.10591 -12.93823 -12.88198 -12.60835 -12.46962 -12.33799 -12.10929 -12.07533 -11.90405 -11.83548 -11.79405 -11.18726 -11.00804 -10.95798 -10.69582 -10.27446 -9.93139 -9.30053 -8.00814 -5.34123 0.53595 1.07827 1.35655 1.36574 1.41561 1.42722 1.48486 1.73248 2.49037 2.75378 2.99632 3.11638 3.28291 3.32235 3.47623 3.65384 3.74681 3.81051 3.84310 3.91587 3.95733 4.02327 4.12300 4.23115 4.32718 4.40021 4.46317 4.48058 4.57295 4.57573 4.61223 4.69137 4.69983 4.79759 4.83621 4.85218 4.88028 4.88746 5.05821 5.11360 5.17052 5.20222 5.61808 5.77552 6.09166 6.15644 6.22606 6.87739 7.07661 7.47748 7.82631 8.01965 9.20264 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.002086 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.395484 B =13417.038335 C =13825.821486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.080 3.920 4 C -0.105 4.105 5 H 0.113 0.887 6 C -0.133 4.133 7 C 0.543 3.457 8 O -0.569 6.569 9 N -0.612 5.612 10 C 0.110 3.890 11 C -0.133 4.133 12 C 0.128 3.872 13 H 0.142 0.858 14 N -0.275 5.275 15 C -0.013 4.013 16 C -0.038 4.038 17 C 0.238 3.762 18 N -0.752 5.752 19 C -0.230 4.230 20 H 0.067 0.933 21 C -0.059 4.059 22 N -0.980 5.980 23 Si 0.951 3.049 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.255 1.255 27 N -0.293 5.293 28 N -0.104 5.104 29 C 0.096 3.904 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.228 0.772 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.363 0.637 46 H 0.258 0.742 47 H 0.094 0.906 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.819 2.980 -9.391 35.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.003 3.997 4 C -0.126 4.126 5 H 0.131 0.869 6 C -0.191 4.191 7 C 0.333 3.667 8 O -0.448 6.448 9 N -0.346 5.346 10 C -0.012 4.012 11 C -0.172 4.172 12 C 0.026 3.974 13 H 0.160 0.840 14 N -0.069 5.069 15 C -0.164 4.164 16 C -0.176 4.176 17 C 0.110 3.890 18 N -0.398 5.398 19 C -0.361 4.361 20 H 0.085 0.915 21 C -0.251 4.251 22 N -0.631 5.631 23 Si 0.779 3.221 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.180 1.180 27 N -0.161 5.161 28 N -0.082 5.082 29 C -0.028 4.028 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.244 0.756 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.195 0.805 46 H 0.067 0.933 47 H 0.112 0.888 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -34.616 2.767 -8.459 35.742 hybrid contribution 0.543 1.347 -0.064 1.454 sum -34.073 4.114 -8.524 35.363 Atomic orbital electron populations 1.22941 0.79219 1.04054 1.00827 1.87790 1.21529 1.27502 1.95598 1.22194 0.91672 0.84696 1.01178 1.21215 0.95046 0.93156 1.03158 0.86889 1.21646 1.02204 1.01372 0.93878 1.20334 0.79040 0.90845 0.76470 1.90724 1.61651 1.43180 1.49202 1.48323 1.21725 1.11857 1.52687 1.22021 0.91445 0.86546 1.01235 1.23181 0.98633 0.96500 0.98855 1.22990 0.83188 0.90710 1.00531 0.83992 1.47320 1.13580 1.32578 1.13421 1.23725 0.86741 1.03486 1.02471 1.22207 0.99147 1.02752 0.93527 1.18935 0.80167 0.92885 0.96982 1.42671 1.02056 1.34243 1.60855 1.19054 0.82164 1.10322 1.24526 0.91471 1.25393 0.95072 1.02227 1.02378 1.69862 1.00790 1.41857 1.50541 0.85476 0.77921 0.79767 0.78970 1.21461 1.21814 1.18014 1.75083 0.99900 1.19968 1.21101 1.78237 1.14758 1.08492 1.06697 1.22696 0.95964 0.90450 0.93689 0.88063 0.93311 0.93313 0.92964 0.92670 0.91045 0.90042 0.92700 0.90130 0.89829 0.86853 0.87725 0.75578 0.94784 0.91343 0.80477 0.93318 0.88800 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.85 10.15 -148.98 -1.51 -7.36 16 3 C 0.08 1.11 4.86 71.98 0.35 1.46 16 4 C -0.10 -1.29 2.63 -11.54 -0.03 -1.32 16 5 H 0.11 1.09 6.43 -2.39 -0.02 1.07 16 6 C -0.13 -1.51 9.13 71.98 0.66 -0.85 16 7 C 0.54 8.48 6.87 87.66 0.60 9.09 16 8 O -0.57 -13.09 16.66 -3.03 -0.05 -13.14 16 9 N -0.61 -6.87 3.33 -811.80 -2.70 -9.57 16 10 C 0.11 1.01 6.87 86.73 0.60 1.60 16 11 C -0.13 -0.99 6.38 31.78 0.20 -0.78 16 12 C 0.13 1.37 4.08 46.38 0.19 1.56 16 13 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 14 N -0.28 -5.43 3.37 -320.58 -1.08 -6.51 16 15 C -0.01 -0.28 10.59 83.49 0.88 0.61 16 16 C -0.04 -1.21 6.61 41.60 0.28 -0.93 16 17 C 0.24 8.87 6.82 85.63 0.58 9.45 16 18 N -0.75 -35.17 5.40 -347.16 -1.87 -37.04 16 19 C -0.23 -12.95 10.47 84.03 0.88 -12.07 16 20 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 21 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 22 N -0.98 -62.34 13.97 21.65 0.30 -62.03 16 23 Si 0.95 46.03 27.73 68.60 1.90 47.93 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.26 -11.17 6.52 99.48 0.65 -10.52 16 27 N -0.29 -10.33 12.41 -48.60 -0.60 -10.93 16 28 N -0.10 -2.96 13.16 37.02 0.49 -2.48 16 29 C 0.10 0.84 6.26 86.86 0.54 1.39 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.85 8.01 -2.39 -0.02 0.83 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.92 7.69 -2.38 -0.02 0.90 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 0.68 6.39 -2.39 -0.02 0.66 16 42 H 0.23 3.01 7.02 -2.91 -0.02 2.99 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.36 16.79 5.52 -92.71 -0.51 16.28 16 46 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.11 0.77 6.86 -2.39 -0.02 0.75 16 Total: -1.00 -79.81 395.15 2.72 -77.09 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.40 Total: 16.36 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 7.45 Total: 7.68 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -5.47 Total: -128.57 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.56 Total: -20.50 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Total: -79.81 2.72 -77.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.351 kcal (2) G-P(sol) polarization free energy of solvation -79.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds