Wall clock time and date at job start Tue Mar 31 2020 19:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00081 * 2 1 4 4 C 1.52999 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46979 * 54.99672 * 4 3 2 6 6 C 1.53009 * 109.46795 * 295.00039 * 4 3 2 7 7 C 1.52996 * 109.47444 * 175.00307 * 4 3 2 8 8 C 1.50695 * 109.47121 * 184.99745 * 7 4 3 9 9 O 1.21279 * 120.00334 * 359.97438 * 8 7 4 10 10 N 1.34784 * 120.00127 * 179.97438 * 8 7 4 11 11 C 1.47576 * 134.49542 * 180.02562 * 10 8 7 12 12 C 1.53942 * 86.11852 * 155.35966 * 11 10 8 13 13 N 1.46491 * 113.74194 * 137.95195 * 12 11 10 14 14 C 1.35317 * 125.87029 * 277.21898 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.18381 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47807 * 134.45239 * 359.87039 * 10 8 7 29 29 H 1.08989 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46733 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47503 * 59.99448 * 1 2 3 32 32 H 1.08999 * 109.47208 * 60.00096 * 3 2 1 33 33 H 1.09002 * 109.47434 * 300.00483 * 3 2 1 34 34 H 1.08999 * 109.46595 * 59.99822 * 6 4 3 35 35 H 1.08995 * 109.47027 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.47212 * 300.00062 * 6 4 3 37 37 H 1.08996 * 109.47120 * 64.99647 * 7 4 3 38 38 H 1.08998 * 109.46940 * 304.99776 * 7 4 3 39 39 H 1.09000 * 113.76645 * 41.05224 * 11 10 8 40 40 H 1.09007 * 113.76941 * 269.66440 * 11 10 8 41 41 H 1.09000 * 113.74068 * 269.15192 * 12 11 10 42 42 H 1.08002 * 126.91295 * 0.03783 * 14 13 12 43 43 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 44 44 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 45 45 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 46 46 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.77031 * 90.37650 * 28 10 8 48 48 H 1.08999 * 113.84046 * 318.91260 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8426 6 6 3.9963 0.5364 1.3065 7 6 4.1573 2.5769 -0.1263 8 6 5.6537 2.4493 -0.2504 9 8 6.1720 1.3529 -0.2389 10 7 6.4163 3.5538 -0.3741 11 6 7.8646 3.8003 -0.5138 12 6 7.4677 5.1247 -1.1907 13 7 8.2848 6.2674 -0.7755 14 6 8.1023 7.0084 0.3420 15 6 9.0705 7.9541 0.3297 16 6 9.2934 9.0298 1.3613 17 7 10.2873 8.5732 2.3359 18 6 10.6577 9.3905 3.3704 19 1 10.2137 10.3700 3.4702 20 6 11.6037 8.9601 4.2906 21 7 12.1451 7.7666 4.1685 22 14 12.1083 10.0747 5.7020 23 1 11.3583 11.3534 5.6155 24 1 11.8019 9.4081 6.9932 25 1 13.5656 10.3486 5.6199 26 7 9.7941 7.7427 -0.7754 27 7 9.3029 6.7363 -1.4085 28 6 6.1367 5.0042 -0.4270 29 1 -0.3633 -1.0275 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.5532 -0.4554 1.3960 35 1 5.0828 0.4499 1.3059 36 1 3.6809 1.1525 2.1485 37 1 3.9150 3.1643 0.7593 38 1 3.7604 3.0735 -1.0116 39 1 8.3673 3.0995 -1.1803 40 1 8.3819 3.9306 0.4369 41 1 7.3608 5.0496 -2.2729 42 1 7.3364 6.8739 1.0915 43 1 8.3547 9.2431 1.8726 44 1 9.6539 9.9341 0.8712 45 1 10.6863 7.6936 2.2460 46 1 12.8058 7.4657 4.8117 47 1 6.1448 5.4891 0.5491 48 1 5.2625 5.2628 -1.0246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105354628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:07 Heat of formation + Delta-G solvation = 72.134883 kcal Electronic energy + Delta-G solvation = -28255.199672 eV Core-core repulsion = 24156.855214 eV Total energy + Delta-G solvation = -4098.344458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.15900 -40.84091 -39.03210 -38.16933 -35.08540 -35.00992 -33.55627 -31.88366 -30.29479 -29.96554 -28.12249 -27.59060 -26.93235 -25.97242 -25.70362 -23.93307 -22.85365 -21.34584 -20.88648 -20.60762 -19.39366 -18.09234 -17.65042 -17.06763 -17.01598 -16.49936 -16.34163 -15.86575 -15.67609 -15.31416 -14.95855 -14.68157 -14.39871 -14.17176 -13.81073 -13.60414 -13.38123 -13.32182 -13.22007 -12.96896 -12.66464 -12.65672 -12.48841 -12.09806 -12.01437 -11.79471 -11.52326 -11.35835 -11.31917 -11.12073 -10.91540 -10.84118 -10.55593 -10.17999 -10.13570 -10.07409 -9.93972 -9.75927 -9.32850 -8.94176 -8.89281 -6.93800 -5.75657 -3.05597 1.66708 1.85910 2.09975 2.57687 2.83511 3.23255 3.43845 3.44547 3.50060 3.52550 3.74108 4.12744 4.22752 4.37577 4.44538 4.56912 4.59740 4.62722 4.69547 4.78897 4.80448 4.85761 4.90938 4.93632 5.02704 5.07718 5.11850 5.19477 5.20825 5.30849 5.34513 5.42191 5.43561 5.59491 5.74183 5.77050 5.89415 6.13728 6.14360 6.33527 6.59990 6.64390 6.68238 6.73624 7.05187 7.65787 7.70123 8.41414 8.75216 9.53404 10.08589 10.44203 11.47047 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.001908 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.000520 B =14674.200574 C =15676.234330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.066 3.934 4 C -0.076 4.076 5 H 0.088 0.912 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.545 3.455 9 O -0.522 6.522 10 N -0.646 5.646 11 C 0.104 3.896 12 C 0.113 3.887 13 N -0.295 5.295 14 C -0.046 4.046 15 C 0.000 4.000 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.241 4.241 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.090 5.090 28 C 0.099 3.901 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.189 0.811 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.104 0.896 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.798 -12.134 -11.772 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.094 4.094 5 H 0.106 0.894 6 C -0.208 4.208 7 C -0.170 4.170 8 C 0.336 3.664 9 O -0.397 6.397 10 N -0.384 5.384 11 C -0.020 4.020 12 C 0.009 3.991 13 N -0.090 5.090 14 C -0.196 4.196 15 C -0.138 4.138 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.372 4.372 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.117 5.117 27 N -0.069 5.069 28 C -0.025 4.025 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.205 0.795 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.122 0.878 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.638 -13.105 -12.882 30.737 hybrid contribution -0.503 0.584 1.731 1.895 sum -25.141 -12.521 -11.151 30.219 Atomic orbital electron populations 1.22751 0.80951 1.02876 0.99962 1.87892 1.19649 1.27720 1.95385 1.22575 0.93487 0.84874 1.00179 1.20844 0.92265 0.94944 1.01395 0.89351 1.21906 1.03062 1.00871 0.94972 1.21613 0.91186 0.99519 1.04683 1.20240 0.88839 0.82240 0.75123 1.90737 1.74795 1.25068 1.49115 1.49758 1.08560 1.05740 1.74349 1.23614 0.83298 0.93441 1.01604 1.23671 0.90146 0.83073 1.02218 1.47116 1.22025 1.23101 1.16737 1.23311 1.05924 0.96654 0.93738 1.22500 0.94001 1.00402 0.96858 1.18966 0.93858 0.90752 0.86164 1.42314 1.47430 1.19081 1.28254 1.19272 1.18257 0.97629 1.01992 0.90801 1.24766 0.99533 0.97000 0.99596 1.69692 1.31883 1.18359 1.38006 0.86089 0.78149 0.79637 0.82116 1.20454 1.21935 1.21833 1.75133 1.22129 1.08429 1.06058 1.78311 0.99262 1.08517 1.20766 1.23695 0.97003 0.80402 1.01411 0.89556 0.94034 0.94085 0.93078 0.93275 0.91921 0.90723 0.93355 0.88342 0.88533 0.88049 0.88200 0.83705 0.79451 0.94424 0.94247 0.78106 0.93535 0.87767 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.17 10.24 -35.23 -0.36 -3.53 16 3 C 0.07 0.40 5.32 37.16 0.20 0.60 16 4 C -0.08 -0.56 2.27 -90.62 -0.21 -0.77 16 5 H 0.09 0.80 7.95 -51.93 -0.41 0.39 16 6 C -0.15 -1.34 8.83 37.16 0.33 -1.01 16 7 C -0.13 -0.74 4.92 -27.89 -0.14 -0.88 16 8 C 0.55 4.97 7.77 -10.98 -0.09 4.89 16 9 O -0.52 -6.87 14.69 5.56 0.08 -6.79 16 10 N -0.65 -4.98 3.61 -178.36 -0.64 -5.62 16 11 C 0.10 0.92 8.64 -2.97 -0.03 0.89 16 12 C 0.11 0.87 5.13 -70.16 -0.36 0.51 16 13 N -0.30 -3.64 3.54 -56.32 -0.20 -3.84 16 14 C -0.05 -0.62 10.72 -17.04 -0.18 -0.80 16 15 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 16 C 0.23 4.66 6.82 -5.19 -0.04 4.63 16 17 N -0.73 -18.54 5.59 -61.09 -0.34 -18.89 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 27 N -0.09 -1.48 13.17 60.35 0.79 -0.69 16 28 C 0.10 0.50 8.00 -2.85 -0.02 0.48 16 29 H 0.09 0.35 8.14 -51.94 -0.42 -0.07 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 35 H 0.07 0.83 5.95 -51.93 -0.31 0.52 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.19 1.81 6.74 -52.49 -0.35 1.46 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.39 10.66 7.66 -40.82 -0.31 10.35 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.10 0.48 6.31 -51.93 -0.33 0.15 16 48 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -37.06 401.30 -6.31 -43.36 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.59 Total: 2.87 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.21 Total: 1.96 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.75 Total: -61.22 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.28 Total: -10.32 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.06 -6.31 -43.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.499 kcal (2) G-P(sol) polarization free energy of solvation -37.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds