Wall clock time and date at job start Tue Mar 31 2020 19:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00081 * 2 1 4 4 C 1.52999 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46979 * 54.99672 * 4 3 2 6 6 C 1.53009 * 109.46795 * 295.00039 * 4 3 2 7 7 C 1.52996 * 109.47444 * 175.00307 * 4 3 2 8 8 C 1.50695 * 109.47121 * 184.99745 * 7 4 3 9 9 O 1.21279 * 120.00334 * 359.97438 * 8 7 4 10 10 N 1.34784 * 120.00127 * 179.97438 * 8 7 4 11 11 C 1.47576 * 134.49542 * 180.02562 * 10 8 7 12 12 C 1.53942 * 86.11852 * 155.35966 * 11 10 8 13 13 N 1.46491 * 113.74194 * 137.95195 * 12 11 10 14 14 C 1.35317 * 125.87029 * 277.21898 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.18381 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47807 * 134.45239 * 359.87039 * 10 8 7 29 29 H 1.08989 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46733 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47503 * 59.99448 * 1 2 3 32 32 H 1.08999 * 109.47208 * 60.00096 * 3 2 1 33 33 H 1.09002 * 109.47434 * 300.00483 * 3 2 1 34 34 H 1.08999 * 109.46595 * 59.99822 * 6 4 3 35 35 H 1.08995 * 109.47027 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.47212 * 300.00062 * 6 4 3 37 37 H 1.08996 * 109.47120 * 64.99647 * 7 4 3 38 38 H 1.08998 * 109.46940 * 304.99776 * 7 4 3 39 39 H 1.09000 * 113.76645 * 41.05224 * 11 10 8 40 40 H 1.09007 * 113.76941 * 269.66440 * 11 10 8 41 41 H 1.09000 * 113.74068 * 269.15192 * 12 11 10 42 42 H 1.08002 * 126.91295 * 0.03783 * 14 13 12 43 43 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 44 44 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 45 45 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 46 46 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.77031 * 90.37650 * 28 10 8 48 48 H 1.08999 * 113.84046 * 318.91260 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8426 6 6 3.9963 0.5364 1.3065 7 6 4.1573 2.5769 -0.1263 8 6 5.6537 2.4493 -0.2504 9 8 6.1720 1.3529 -0.2389 10 7 6.4163 3.5538 -0.3741 11 6 7.8646 3.8003 -0.5138 12 6 7.4677 5.1247 -1.1907 13 7 8.2848 6.2674 -0.7755 14 6 8.1023 7.0084 0.3420 15 6 9.0705 7.9541 0.3297 16 6 9.2934 9.0298 1.3613 17 7 10.2873 8.5732 2.3359 18 6 10.6577 9.3905 3.3704 19 1 10.2137 10.3700 3.4702 20 6 11.6037 8.9601 4.2906 21 7 12.1451 7.7666 4.1685 22 14 12.1083 10.0747 5.7020 23 1 11.3583 11.3534 5.6155 24 1 11.8019 9.4081 6.9932 25 1 13.5656 10.3486 5.6199 26 7 9.7941 7.7427 -0.7754 27 7 9.3029 6.7363 -1.4085 28 6 6.1367 5.0042 -0.4270 29 1 -0.3633 -1.0275 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.5532 -0.4554 1.3960 35 1 5.0828 0.4499 1.3059 36 1 3.6809 1.1525 2.1485 37 1 3.9150 3.1643 0.7593 38 1 3.7604 3.0735 -1.0116 39 1 8.3673 3.0995 -1.1803 40 1 8.3819 3.9306 0.4369 41 1 7.3608 5.0496 -2.2729 42 1 7.3364 6.8739 1.0915 43 1 8.3547 9.2431 1.8726 44 1 9.6539 9.9341 0.8712 45 1 10.6863 7.6936 2.2460 46 1 12.8058 7.4657 4.8117 47 1 6.1448 5.4891 0.5491 48 1 5.2625 5.2628 -1.0246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105354628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:06 Heat of formation + Delta-G solvation = 43.834484 kcal Electronic energy + Delta-G solvation = -28256.426869 eV Core-core repulsion = 24156.855214 eV Total energy + Delta-G solvation = -4099.571656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.29929 -41.51805 -39.64880 -38.75696 -36.78397 -35.64289 -34.77324 -33.56903 -31.61414 -31.02570 -28.63728 -28.14489 -27.82375 -27.26943 -26.27991 -24.90404 -24.67428 -22.39097 -21.93028 -21.31431 -19.99231 -19.40067 -18.72360 -18.20692 -17.60123 -17.33929 -16.95244 -16.61446 -16.47972 -16.37189 -15.98595 -15.81847 -15.55547 -15.10347 -15.07975 -14.79595 -14.36296 -14.18927 -13.98048 -13.91484 -13.79557 -13.46550 -13.14704 -13.01279 -12.93837 -12.79904 -12.61497 -12.47772 -12.44291 -12.11108 -12.01915 -11.88611 -11.85437 -11.79504 -11.67030 -11.06256 -10.95830 -10.85800 -10.56508 -10.20245 -9.96973 -8.99577 -7.92081 -5.21962 0.58036 1.08933 1.45179 1.47677 1.51995 1.53854 1.62865 1.86417 2.60887 2.80125 2.81454 3.15486 3.40290 3.47097 3.61253 3.70459 3.88262 3.93507 3.98214 4.10354 4.18248 4.24935 4.25812 4.35760 4.43302 4.46586 4.47780 4.50249 4.55534 4.60119 4.62789 4.65698 4.70873 4.73256 4.89271 4.90582 4.92770 5.07510 5.16060 5.21991 5.30863 5.41296 5.53779 5.66331 6.27934 6.29094 6.45054 7.01025 7.34897 7.53278 8.07245 8.31867 9.32017 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.001908 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.000520 B =14674.200574 C =15676.234330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.066 3.934 4 C -0.075 4.075 5 H 0.063 0.937 6 C -0.147 4.147 7 C -0.120 4.120 8 C 0.539 3.461 9 O -0.575 6.575 10 N -0.643 5.643 11 C 0.094 3.906 12 C 0.108 3.892 13 N -0.277 5.277 14 C -0.015 4.015 15 C -0.036 4.036 16 C 0.234 3.766 17 N -0.740 5.740 18 C -0.239 4.239 19 H 0.087 0.913 20 C -0.079 4.079 21 N -0.974 5.974 22 Si 0.977 3.023 23 H -0.260 1.260 24 H -0.293 1.293 25 H -0.299 1.299 26 N -0.298 5.298 27 N -0.110 5.110 28 C 0.112 3.888 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.167 0.833 42 H 0.232 0.768 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.117 0.883 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.407 -10.635 -11.831 33.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.010 4.010 4 C -0.094 4.094 5 H 0.081 0.919 6 C -0.205 4.205 7 C -0.159 4.159 8 C 0.331 3.669 9 O -0.453 6.453 10 N -0.380 5.380 11 C -0.031 4.031 12 C 0.006 3.994 13 N -0.071 5.071 14 C -0.166 4.166 15 C -0.175 4.175 16 C 0.106 3.894 17 N -0.383 5.383 18 C -0.371 4.371 19 H 0.104 0.896 20 C -0.271 4.271 21 N -0.625 5.625 22 Si 0.806 3.194 23 H -0.183 1.183 24 H -0.220 1.220 25 H -0.227 1.227 26 N -0.164 5.164 27 N -0.088 5.088 28 C -0.010 4.010 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.184 0.816 42 H 0.248 0.752 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.135 0.865 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -28.301 -11.556 -12.992 33.216 hybrid contribution 0.545 0.026 1.665 1.752 sum -27.756 -11.530 -11.327 32.120 Atomic orbital electron populations 1.22894 0.79552 1.03536 1.00991 1.87854 1.21333 1.29168 1.95639 1.22632 0.92052 0.84460 1.01838 1.20800 0.93670 0.95708 0.99217 0.91851 1.21840 1.01113 1.00774 0.96750 1.21641 0.88047 0.98772 1.07430 1.20967 0.90301 0.81618 0.74011 1.90727 1.75918 1.27208 1.51495 1.49774 1.07745 1.06959 1.73524 1.23552 0.84435 0.94246 1.00826 1.24150 0.90888 0.80543 1.03794 1.47422 1.20856 1.23068 1.15788 1.23757 1.04802 0.94326 0.93746 1.22309 0.96223 1.02032 0.96903 1.19009 0.93381 0.91135 0.85856 1.42543 1.48497 1.18239 1.28972 1.19753 1.17320 0.98064 1.01958 0.89551 1.25627 1.00322 0.98505 1.02645 1.69864 1.32998 1.20454 1.39161 0.85014 0.77189 0.78515 0.78671 1.18349 1.22048 1.22660 1.75060 1.23877 1.10133 1.07377 1.78204 1.00732 1.08440 1.21403 1.23961 0.96661 0.78118 1.02301 0.89272 0.93088 0.92874 0.91618 0.91195 0.93294 0.93434 0.92041 0.85819 0.85016 0.88796 0.89987 0.81609 0.75214 0.91461 0.95377 0.79909 0.94210 0.86477 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.32 10.24 -148.98 -1.53 -7.85 16 3 C 0.07 0.64 5.32 71.98 0.38 1.02 16 4 C -0.07 -1.00 2.27 -10.79 -0.02 -1.02 16 5 H 0.06 1.16 7.95 -2.39 -0.02 1.14 16 6 C -0.15 -2.61 8.83 71.99 0.64 -1.98 16 7 C -0.12 -0.93 4.92 29.85 0.15 -0.78 16 8 C 0.54 8.87 7.77 87.65 0.68 9.56 16 9 O -0.57 -15.47 14.69 -3.03 -0.04 -15.51 16 10 N -0.64 -8.18 3.61 -836.59 -3.02 -11.20 16 11 C 0.09 1.55 8.64 86.49 0.75 2.30 16 12 C 0.11 1.33 5.13 46.74 0.24 1.57 16 13 N -0.28 -6.21 3.54 -332.09 -1.18 -7.39 16 14 C -0.02 -0.36 10.72 83.49 0.89 0.53 16 15 C -0.04 -1.26 6.61 41.60 0.28 -0.99 16 16 C 0.23 9.21 6.82 85.63 0.58 9.80 16 17 N -0.74 -37.86 5.59 -347.18 -1.94 -39.80 16 18 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 19 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 21 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 22 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 26 N -0.30 -11.62 12.41 -48.60 -0.60 -12.23 16 27 N -0.11 -3.54 13.17 37.02 0.49 -3.06 16 28 C 0.11 0.57 8.00 86.44 0.69 1.26 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.96 7.82 -2.39 -0.02 0.94 16 35 H 0.05 1.10 5.95 -2.39 -0.01 1.09 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.17 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.23 3.29 6.74 -2.91 -0.02 3.27 16 43 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.37 20.90 7.66 -92.71 -0.71 20.19 16 46 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.12 0.39 6.31 -2.39 -0.02 0.37 16 48 H 0.15 -0.43 8.14 -2.39 -0.02 -0.44 16 Total: -1.00 -86.17 401.30 2.55 -83.62 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.26 Total: 19.59 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 7.81 Total: 6.28 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -5.97 Total: -134.16 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.57 Total: -23.36 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -86.17 2.55 -83.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.453 kcal (2) G-P(sol) polarization free energy of solvation -86.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds