Wall clock time and date at job start Tue Mar 31 2020 19:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00383 * 2 1 4 4 C 1.52997 * 109.47748 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46547 * 305.00013 * 4 3 2 6 6 C 1.52994 * 109.46994 * 64.99595 * 4 3 2 7 7 C 1.52998 * 109.47214 * 185.00148 * 4 3 2 8 8 C 1.50701 * 109.46862 * 174.99733 * 7 4 3 9 9 O 1.21281 * 120.00107 * 0.02562 * 8 7 4 10 10 N 1.34781 * 119.99641 * 179.97438 * 8 7 4 11 11 C 1.47587 * 134.48985 * 180.02562 * 10 8 7 12 12 C 1.53943 * 86.11372 * 155.35700 * 11 10 8 13 13 N 1.46497 * 113.73765 * 137.95286 * 12 11 10 14 14 C 1.35317 * 125.87017 * 276.92228 * 13 12 11 15 15 C 1.35348 * 106.17735 * 180.21003 * 14 13 12 16 16 C 1.50695 * 126.75026 * 179.78015 * 15 14 13 17 17 N 1.46501 * 109.47705 * 94.99599 * 16 15 14 18 18 C 1.36933 * 120.00058 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00207 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99868 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00269 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47323 * 120.00290 * 22 20 18 25 25 H 1.48502 * 109.47141 * 240.00267 * 22 20 18 26 26 N 1.33774 * 106.49647 * 359.63857 * 15 14 13 27 27 N 1.28636 * 108.88665 * 0.37294 * 26 15 14 28 28 C 1.47811 * 134.45888 * 359.86601 * 10 8 7 29 29 H 1.09003 * 109.47132 * 59.99978 * 1 2 3 30 30 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47598 * 300.00173 * 1 2 3 32 32 H 1.09004 * 109.46578 * 59.99652 * 3 2 1 33 33 H 1.08994 * 109.47033 * 300.00473 * 3 2 1 34 34 H 1.09002 * 109.47622 * 300.00505 * 6 4 3 35 35 H 1.09003 * 109.47132 * 60.00776 * 6 4 3 36 36 H 1.09008 * 109.47012 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.47184 * 54.99905 * 7 4 3 38 38 H 1.08999 * 109.47076 * 294.99655 * 7 4 3 39 39 H 1.09000 * 113.76860 * 41.05689 * 11 10 8 40 40 H 1.09000 * 113.86642 * 269.67422 * 11 10 8 41 41 H 1.09004 * 113.74249 * 269.15104 * 12 11 10 42 42 H 1.08002 * 126.90702 * 359.93974 * 14 13 12 43 43 H 1.09004 * 109.46902 * 214.99581 * 16 15 14 44 44 H 1.09001 * 109.47591 * 334.99010 * 16 15 14 45 45 H 0.96996 * 119.99307 * 359.97438 * 17 16 15 46 46 H 0.96999 * 120.00192 * 180.02562 * 21 20 18 47 47 H 1.09001 * 113.76395 * 90.38071 * 28 10 8 48 48 H 1.08996 * 113.83516 * 318.92214 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9962 0.5364 -1.3063 7 6 4.1572 2.5770 0.1264 8 6 5.6537 2.4494 0.2506 9 8 6.1718 1.3529 0.2392 10 7 6.4162 3.5539 0.3734 11 6 7.8647 3.8006 0.5120 12 6 7.5790 5.1902 -0.0855 13 7 8.3019 6.2777 0.5786 14 6 7.9194 6.9067 1.7139 15 6 8.8676 7.8390 1.9663 16 6 8.8962 8.8063 3.1214 17 7 9.7101 8.2495 4.2048 18 6 9.8818 8.9563 5.3650 19 1 9.4168 9.9241 5.4815 20 6 10.6525 8.4284 6.3917 21 7 11.2188 7.2487 6.2499 22 14 10.8862 9.3922 7.9747 23 1 10.1510 10.6793 7.8836 24 1 10.3609 8.6024 9.1173 25 1 12.3319 9.6610 8.1818 26 7 9.7760 7.7307 0.9903 27 7 9.4103 6.7987 0.1825 28 6 6.1371 5.0047 0.4203 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.5532 -0.4555 -1.3959 35 1 3.6810 1.1526 -2.1484 36 1 5.0828 0.4500 -1.3057 37 1 3.7602 3.0736 1.0117 38 1 3.9149 3.1644 -0.7592 39 1 8.4812 3.1666 -0.1253 40 1 8.2103 3.8291 1.5453 41 1 7.6615 5.2263 -1.1718 42 1 7.0332 6.7081 2.2985 43 1 9.3269 9.7521 2.7927 44 1 7.8806 8.9747 3.4796 45 1 10.1273 7.3801 4.1002 46 1 11.7570 6.8796 6.9675 47 1 5.9720 5.3879 1.4273 48 1 5.3771 5.3302 -0.2899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105354629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:10 Heat of formation + Delta-G solvation = 72.145639 kcal Electronic energy + Delta-G solvation = -28239.274256 eV Core-core repulsion = 24140.930264 eV Total energy + Delta-G solvation = -4098.343992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.15931 -40.84145 -39.03209 -38.16776 -35.08957 -35.01149 -33.55659 -31.88391 -30.29989 -29.96624 -28.12090 -27.59801 -26.93628 -25.97486 -25.70256 -23.93432 -22.85394 -21.35650 -20.90483 -20.57146 -19.41751 -18.07059 -17.68481 -17.10485 -16.92846 -16.48602 -16.33883 -15.89577 -15.76539 -15.26894 -14.95500 -14.65723 -14.38963 -14.12801 -13.80672 -13.71885 -13.40681 -13.31852 -13.17575 -12.95539 -12.66537 -12.64760 -12.52263 -12.10426 -12.00275 -11.79747 -11.54023 -11.35933 -11.31557 -11.11890 -10.91680 -10.84120 -10.56143 -10.19544 -10.13281 -10.07755 -9.94580 -9.75989 -9.31718 -8.94364 -8.89142 -6.93781 -5.75600 -3.05552 1.66755 1.85684 2.10169 2.57300 2.83476 3.23620 3.43643 3.44556 3.50042 3.52561 3.74139 4.12750 4.22383 4.37451 4.44355 4.57298 4.59524 4.62528 4.69758 4.79129 4.80904 4.85576 4.91591 4.92653 5.02451 5.07532 5.12247 5.19366 5.21190 5.29193 5.33542 5.41792 5.42921 5.59422 5.73461 5.74950 5.88382 6.09921 6.14416 6.33485 6.59897 6.64314 6.68690 6.73555 7.05031 7.65672 7.70112 8.41414 8.75169 9.53417 10.08628 10.44282 11.47084 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.001901 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.635372 B =14723.034736 C =15775.504490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.066 3.934 4 C -0.076 4.076 5 H 0.089 0.911 6 C -0.150 4.150 7 C -0.130 4.130 8 C 0.546 3.454 9 O -0.522 6.522 10 N -0.646 5.646 11 C 0.104 3.896 12 C 0.113 3.887 13 N -0.295 5.295 14 C -0.047 4.047 15 C 0.000 4.000 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.090 5.090 28 C 0.099 3.901 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.189 0.811 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.104 0.896 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.197 -10.670 -17.560 30.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.095 4.095 5 H 0.107 0.893 6 C -0.207 4.207 7 C -0.170 4.170 8 C 0.336 3.664 9 O -0.397 6.397 10 N -0.384 5.384 11 C -0.020 4.020 12 C 0.009 3.991 13 N -0.090 5.090 14 C -0.196 4.196 15 C -0.138 4.138 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.117 5.117 27 N -0.069 5.069 28 C -0.025 4.025 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.122 0.878 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.848 -11.537 -18.552 30.897 hybrid contribution -0.819 0.408 1.725 1.953 sum -22.668 -11.129 -16.827 30.345 Atomic orbital electron populations 1.22749 0.80943 1.02881 0.99965 1.87889 1.19658 1.27717 1.95385 1.22573 0.93474 0.84884 1.00184 1.20848 0.92294 0.94982 1.01404 0.89289 1.21897 1.03023 1.00833 0.94927 1.21613 0.91188 0.99491 1.04698 1.20240 0.88734 0.82154 0.75305 1.90737 1.74633 1.24954 1.49399 1.49757 1.08735 1.05882 1.74023 1.23609 0.82978 0.92374 1.02992 1.23672 0.91511 0.84211 0.99709 1.47118 1.17431 1.25976 1.18460 1.23310 1.04921 0.99038 0.92362 1.22497 0.92090 1.00436 0.98730 1.18967 0.95765 0.91869 0.83140 1.42307 1.59380 1.22200 1.13189 1.19269 1.25669 1.00475 0.91724 0.90800 1.24768 1.00319 0.97104 0.98725 1.69692 1.37560 1.17501 1.33192 0.86088 0.77515 0.78934 0.83449 1.20457 1.21932 1.21834 1.75133 1.23062 1.10925 1.02623 1.78312 0.98538 1.07936 1.22068 1.23695 0.95545 0.79822 1.03452 0.94093 0.89553 0.94022 0.93187 0.93157 0.91945 0.93479 0.90732 0.88413 0.88456 0.88059 0.88195 0.83708 0.79453 0.94242 0.94434 0.78104 0.93533 0.87766 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.19 10.24 -35.23 -0.36 -3.55 16 3 C 0.07 0.41 5.32 37.16 0.20 0.61 16 4 C -0.08 -0.57 2.27 -90.62 -0.21 -0.77 16 5 H 0.09 0.85 7.96 -51.93 -0.41 0.43 16 6 C -0.15 -1.23 8.83 37.15 0.33 -0.91 16 7 C -0.13 -0.74 4.92 -27.88 -0.14 -0.87 16 8 C 0.55 4.97 7.77 -10.98 -0.09 4.89 16 9 O -0.52 -6.87 14.69 5.56 0.08 -6.79 16 10 N -0.65 -4.98 3.61 -178.35 -0.64 -5.62 16 11 C 0.10 0.91 8.64 -2.96 -0.03 0.89 16 12 C 0.11 0.86 5.14 -70.16 -0.36 0.50 16 13 N -0.30 -3.64 3.54 -56.31 -0.20 -3.83 16 14 C -0.05 -0.62 10.72 -17.05 -0.18 -0.80 16 15 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 16 C 0.23 4.66 6.82 -5.20 -0.04 4.63 16 17 N -0.73 -18.55 5.59 -61.09 -0.34 -18.89 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 27 N -0.09 -1.48 13.17 60.35 0.79 -0.69 16 28 C 0.10 0.50 8.00 -2.85 -0.02 0.48 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.76 5.95 -51.92 -0.31 0.45 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.19 1.81 6.73 -52.49 -0.35 1.46 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.39 10.67 7.66 -40.82 -0.31 10.35 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.10 0.48 6.31 -51.93 -0.33 0.15 16 48 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -37.08 401.30 -6.31 -43.39 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.59 Total: 2.78 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.21 Total: 2.06 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.75 Total: -61.23 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.28 Total: -10.34 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.08 -6.31 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.531 kcal (2) G-P(sol) polarization free energy of solvation -37.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds