Wall clock time and date at job start Tue Mar 31 2020 19:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00383 * 2 1 4 4 C 1.52997 * 109.47748 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46547 * 305.00013 * 4 3 2 6 6 C 1.52994 * 109.46994 * 64.99595 * 4 3 2 7 7 C 1.52998 * 109.47214 * 185.00148 * 4 3 2 8 8 C 1.50701 * 109.46862 * 174.99733 * 7 4 3 9 9 O 1.21281 * 120.00107 * 0.02562 * 8 7 4 10 10 N 1.34781 * 119.99641 * 179.97438 * 8 7 4 11 11 C 1.47587 * 134.48985 * 180.02562 * 10 8 7 12 12 C 1.53943 * 86.11372 * 155.35700 * 11 10 8 13 13 N 1.46497 * 113.73765 * 137.95286 * 12 11 10 14 14 C 1.35317 * 125.87017 * 276.92228 * 13 12 11 15 15 C 1.35348 * 106.17735 * 180.21003 * 14 13 12 16 16 C 1.50695 * 126.75026 * 179.78015 * 15 14 13 17 17 N 1.46501 * 109.47705 * 94.99599 * 16 15 14 18 18 C 1.36933 * 120.00058 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00207 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99868 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00269 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47323 * 120.00290 * 22 20 18 25 25 H 1.48502 * 109.47141 * 240.00267 * 22 20 18 26 26 N 1.33774 * 106.49647 * 359.63857 * 15 14 13 27 27 N 1.28636 * 108.88665 * 0.37294 * 26 15 14 28 28 C 1.47811 * 134.45888 * 359.86601 * 10 8 7 29 29 H 1.09003 * 109.47132 * 59.99978 * 1 2 3 30 30 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47598 * 300.00173 * 1 2 3 32 32 H 1.09004 * 109.46578 * 59.99652 * 3 2 1 33 33 H 1.08994 * 109.47033 * 300.00473 * 3 2 1 34 34 H 1.09002 * 109.47622 * 300.00505 * 6 4 3 35 35 H 1.09003 * 109.47132 * 60.00776 * 6 4 3 36 36 H 1.09008 * 109.47012 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.47184 * 54.99905 * 7 4 3 38 38 H 1.08999 * 109.47076 * 294.99655 * 7 4 3 39 39 H 1.09000 * 113.76860 * 41.05689 * 11 10 8 40 40 H 1.09000 * 113.86642 * 269.67422 * 11 10 8 41 41 H 1.09004 * 113.74249 * 269.15104 * 12 11 10 42 42 H 1.08002 * 126.90702 * 359.93974 * 14 13 12 43 43 H 1.09004 * 109.46902 * 214.99581 * 16 15 14 44 44 H 1.09001 * 109.47591 * 334.99010 * 16 15 14 45 45 H 0.96996 * 119.99307 * 359.97438 * 17 16 15 46 46 H 0.96999 * 120.00192 * 180.02562 * 21 20 18 47 47 H 1.09001 * 113.76395 * 90.38071 * 28 10 8 48 48 H 1.08996 * 113.83516 * 318.92214 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9962 0.5364 -1.3063 7 6 4.1572 2.5770 0.1264 8 6 5.6537 2.4494 0.2506 9 8 6.1718 1.3529 0.2392 10 7 6.4162 3.5539 0.3734 11 6 7.8647 3.8006 0.5120 12 6 7.5790 5.1902 -0.0855 13 7 8.3019 6.2777 0.5786 14 6 7.9194 6.9067 1.7139 15 6 8.8676 7.8390 1.9663 16 6 8.8962 8.8063 3.1214 17 7 9.7101 8.2495 4.2048 18 6 9.8818 8.9563 5.3650 19 1 9.4168 9.9241 5.4815 20 6 10.6525 8.4284 6.3917 21 7 11.2188 7.2487 6.2499 22 14 10.8862 9.3922 7.9747 23 1 10.1510 10.6793 7.8836 24 1 10.3609 8.6024 9.1173 25 1 12.3319 9.6610 8.1818 26 7 9.7760 7.7307 0.9903 27 7 9.4103 6.7987 0.1825 28 6 6.1371 5.0047 0.4203 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.5532 -0.4555 -1.3959 35 1 3.6810 1.1526 -2.1484 36 1 5.0828 0.4500 -1.3057 37 1 3.7602 3.0736 1.0117 38 1 3.9149 3.1644 -0.7592 39 1 8.4812 3.1666 -0.1253 40 1 8.2103 3.8291 1.5453 41 1 7.6615 5.2263 -1.1718 42 1 7.0332 6.7081 2.2985 43 1 9.3269 9.7521 2.7927 44 1 7.8806 8.9747 3.4796 45 1 10.1273 7.3801 4.1002 46 1 11.7570 6.8796 6.9675 47 1 5.9720 5.3879 1.4273 48 1 5.3771 5.3302 -0.2899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105354629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:09 Heat of formation + Delta-G solvation = 43.820700 kcal Electronic energy + Delta-G solvation = -28240.502517 eV Core-core repulsion = 24140.930264 eV Total energy + Delta-G solvation = -4099.572253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.29916 -41.51820 -39.64843 -38.75985 -36.78490 -35.64233 -34.77319 -33.56892 -31.61540 -31.02737 -28.63603 -28.13120 -27.82528 -27.26907 -26.28260 -24.90329 -24.67599 -22.39125 -21.94860 -21.28146 -20.01783 -19.39633 -18.70831 -18.24290 -17.53155 -17.35684 -16.93284 -16.64401 -16.50508 -16.43446 -15.95840 -15.78621 -15.58774 -15.09706 -14.99917 -14.80547 -14.35916 -14.26124 -14.04608 -13.90442 -13.72499 -13.39555 -13.18311 -13.01472 -12.95291 -12.79922 -12.60398 -12.47387 -12.43718 -12.10649 -12.01981 -11.88233 -11.85256 -11.79021 -11.66461 -11.05679 -10.96033 -10.88569 -10.56852 -10.20305 -9.95974 -8.99628 -7.92076 -5.21976 0.58101 1.08755 1.45419 1.47661 1.51952 1.53840 1.62837 1.85919 2.60855 2.80040 2.81269 3.15468 3.40173 3.47010 3.61477 3.70179 3.88739 3.93755 3.98181 4.10443 4.18225 4.25232 4.25957 4.35474 4.43497 4.45912 4.47892 4.49538 4.55442 4.59583 4.62965 4.66297 4.70696 4.74192 4.88963 4.90573 4.93167 5.09311 5.16010 5.21924 5.31270 5.43509 5.53716 5.66312 6.27882 6.28885 6.44896 7.00919 7.34837 7.53276 8.07215 8.31872 9.32005 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.001901 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.635372 B =14723.034736 C =15775.504490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.066 3.934 4 C -0.077 4.077 5 H 0.057 0.943 6 C -0.145 4.145 7 C -0.119 4.119 8 C 0.539 3.461 9 O -0.575 6.575 10 N -0.643 5.643 11 C 0.094 3.906 12 C 0.108 3.892 13 N -0.277 5.277 14 C -0.015 4.015 15 C -0.036 4.036 16 C 0.234 3.766 17 N -0.740 5.740 18 C -0.239 4.239 19 H 0.087 0.913 20 C -0.080 4.080 21 N -0.974 5.974 22 Si 0.977 3.023 23 H -0.260 1.260 24 H -0.293 1.293 25 H -0.299 1.299 26 N -0.298 5.298 27 N -0.109 5.109 28 C 0.112 3.888 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.167 0.833 42 H 0.232 0.768 43 H 0.029 0.971 44 H 0.068 0.932 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.117 0.883 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.744 -9.130 -18.140 33.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.010 4.010 4 C -0.096 4.096 5 H 0.075 0.925 6 C -0.202 4.202 7 C -0.159 4.159 8 C 0.331 3.669 9 O -0.454 6.454 10 N -0.380 5.380 11 C -0.031 4.031 12 C 0.006 3.994 13 N -0.071 5.071 14 C -0.166 4.166 15 C -0.175 4.175 16 C 0.106 3.894 17 N -0.383 5.383 18 C -0.371 4.371 19 H 0.105 0.895 20 C -0.271 4.271 21 N -0.625 5.625 22 Si 0.806 3.194 23 H -0.183 1.183 24 H -0.220 1.220 25 H -0.227 1.227 26 N -0.164 5.164 27 N -0.088 5.088 28 C -0.010 4.010 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.184 0.816 42 H 0.248 0.752 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.135 0.865 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -25.441 -9.942 -19.183 33.378 hybrid contribution 0.227 -0.152 1.791 1.812 sum -25.214 -10.093 -17.392 32.251 Atomic orbital electron populations 1.22892 0.79555 1.03537 1.00988 1.87852 1.21335 1.29183 1.95637 1.22635 0.92100 0.84451 1.01813 1.20809 0.93658 0.95702 0.99411 0.92457 1.21821 1.01210 1.00699 0.96474 1.21641 0.88002 0.98795 1.07433 1.20964 0.90174 0.81532 0.74213 1.90727 1.75759 1.27100 1.51771 1.49773 1.07958 1.07085 1.73176 1.23547 0.84213 0.93325 1.01974 1.24151 0.92909 0.81731 1.00567 1.47425 1.16196 1.25625 1.17897 1.23759 1.04568 0.96519 0.91798 1.22306 0.93973 1.02412 0.98773 1.19009 0.95902 0.91808 0.82664 1.42536 1.60051 1.21565 1.14103 1.19750 1.24345 1.00700 0.92269 0.89543 1.25632 1.00956 0.98247 1.02312 1.69864 1.39094 1.19479 1.34054 0.85011 0.76866 0.78271 0.79226 1.18349 1.22043 1.22664 1.75060 1.24763 1.12702 1.03919 1.78204 1.00225 1.08110 1.22227 1.23961 0.94325 0.77460 1.05299 0.92846 0.89270 0.93123 0.91688 0.91173 0.93447 0.91527 0.93218 0.85819 0.85037 0.88788 0.89999 0.81597 0.75208 0.95357 0.91473 0.79909 0.94210 0.86483 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.43 10.24 -148.98 -1.53 -7.96 16 3 C 0.07 0.65 5.32 71.98 0.38 1.04 16 4 C -0.08 -1.03 2.27 -10.80 -0.02 -1.05 16 5 H 0.06 1.12 7.96 -2.39 -0.02 1.10 16 6 C -0.14 -2.33 8.83 71.98 0.64 -1.69 16 7 C -0.12 -0.93 4.92 29.85 0.15 -0.78 16 8 C 0.54 8.89 7.77 87.66 0.68 9.57 16 9 O -0.57 -15.48 14.69 -3.03 -0.04 -15.52 16 10 N -0.64 -8.18 3.61 -836.57 -3.02 -11.20 16 11 C 0.09 1.55 8.64 86.48 0.75 2.30 16 12 C 0.11 1.33 5.14 46.74 0.24 1.57 16 13 N -0.28 -6.21 3.54 -332.08 -1.18 -7.39 16 14 C -0.02 -0.36 10.72 83.49 0.89 0.53 16 15 C -0.04 -1.26 6.61 41.59 0.28 -0.99 16 16 C 0.23 9.21 6.82 85.63 0.58 9.80 16 17 N -0.74 -37.88 5.59 -347.18 -1.94 -39.82 16 18 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 19 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 21 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 22 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 N -0.30 -11.62 12.41 -48.60 -0.60 -12.22 16 27 N -0.11 -3.54 13.17 37.02 0.49 -3.05 16 28 C 0.11 0.57 8.00 86.43 0.69 1.26 16 29 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.05 0.87 7.82 -2.39 -0.02 0.85 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 1.06 5.95 -2.38 -0.01 1.04 16 37 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.17 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.23 3.29 6.73 -2.91 -0.02 3.27 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.37 20.91 7.66 -92.71 -0.71 20.20 16 46 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.12 0.39 6.31 -2.39 -0.02 0.37 16 48 H 0.15 -0.43 8.14 -2.39 -0.02 -0.44 16 Total: -1.00 -86.25 401.30 2.55 -83.70 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.26 Total: 19.40 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 7.81 Total: 6.54 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -5.97 Total: -134.21 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.57 Total: -23.48 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -86.25 2.55 -83.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.522 kcal (2) G-P(sol) polarization free energy of solvation -86.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds